BAC Information

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BAC

Clone NameB6Ng01-109G02
Chromosome3 (Build37)
Map Location 105,764,969 - 105,766,274
singlet/doubletsinglet
Overlap geneWdr77
Upstream geneCttnbp2nl, 4930564D02Rik, 1700095B22Rik, Kcnd3, Ddx20, 6530418L21Rik, Rap1a, EG433637, Adora3, I830077J02Rik, Atp5f1
Downstream geneOvgp1, 1700027A23Rik, LOC100043591, Bclp2, LOC100043594, LOC670819, LOC100043129, Chia, Chi3l3, Chi3l4, EG624696, BC051070, 2010016I18Rik, Dennd2d, Cept1, Tmem77, LOC100043608, 4933421E11Rik, Cd53, Olfr266
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109G02.bB6Ng01-109G02.g
ACCDH916304DH916305
length8821,178
definitionDH916304|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G02, 5' end.DH916305|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcataccgaggtaagtgttgagtcctgcctatagttatcttttctt
tcccctttgggatatttgaacagtgtttgggtaacagtagtagccagtct
gggttcttttgattggtctttccttaccccaaaactacagtcaggttcca
ttatctgcttcctgtccatttctttgtgctcccgtttcggttgatagtct
cacagccttttgactaagtgggtgtcttagttctgttctcttgctgtgaa
acaacaccatgatcaaggaaaaaacatttatttgagggcttgcttagagt
ttcagagggttttttgactgtcacagcaaggagcgtgggccagtaggcag
agcctggtgctggagcagtagctaagagcttacattctaattcacaagca
tgtggcagaaagatagcaagactggcttggtgtgggcttttgaaacctcg
tagtccatctccagtacacttggccacacctcaaaattcttcctaagtag
tccaccaatgggagccagacattttaaatagacgatcctgtgggagccat
ccccattaaactgaagtgggctgatagcctccatccatcctcttaccctc
aggttcgtcaggttctgttgggtctcatttgattagtccttcctgtccat
atcttaccttccatggcccgtcgggctttagcaatagagtcacactcaca
tcttcacctgcagtctgtgactcttggttcttcattgctttcttgtagcc
tgcagatcaagatcctactttcttgtcagcattcaagccttatgacagta
agctgtgcagcagcttaatctagacagtagagccttgctcttctcagacc
gagacttgtgtgtgtgttggggggggggagga
gaattcaaagacgatctcagaagatagaaaaaactcccaatctcacagat
tgggaggattaatatagtaaaagtggccatcttgccaaaagcaatgaaca
ggttcaatgttatccccatcaaaattcccactcaattgttcatagagttc
gaaaaagcaaattgcaaatttatttggaataaccaaaaaccctggataaa
gaaaactattatcaacaataaaagaactggggaaatcactatctctgacc
tcaagcccaatagtgatttaaaaaaaaaaaaactgcatggtattgctaca
gagacaggcaagtagataaatggaacagtattgaagacccagaaataaat
ccccacacatattgtcacttgatcttttacaaagtatttaaaaccattca
gggggaaaaaagacagcattttcaactaatggttctggttcaactggtgg
tatgcatgtagaagtatgcaaatcaattcatttttatatcattgtacaaa
gctcaagtccaagtggatcaagggcgtccaaataaaaccaggtacactga
aactaatagtagagaaagtaggggatgagccttgaacaaatgggaacagg
ggaaatttttctgaaaacaacactgacggcttatgctctaagatcagcaa
ttgacaaataggacctcataaaattgtaaaaatactgtaaggcaaaggaa
tttgtcagtaggacaaaatggcacccaacagattgggaaaagagttttac
caatcctacatctgattgttggctactaaccaatacatacaaaaactcaa
gaagttagaatacagagaaccaaataacctttttaaaaatgaggtataaa
actaaacaaagaattctcaactgcgtaatatcaaatggctgagagcacct
aaacaattggtcaacatcattagtcatcaggagatgttccatcagccaca
tatgtgaagaaccagcacttcacatctcttactacttagcagcaataatc
tcttaaacctctgatcatattctttgactgactattgagatgtagtagaa
tgtcatgtatatagatgagaatctgactactagatcccttattacaatat
gaataatgaattagacttattaactgcaattggtcatgctatcgactatg
gagccaagacgcgatatcgtgatcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_105764969_105766274
seq2: B6Ng01-109G02.b_49_930

seq1  GAATTCATACCGAGGTAAGTGTTGAGTCCTGCCTATAGTTATCTTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACCGAGGTAAGTGTTGAGTCCTGCCTATAGTTATCTTTTCTT  50

seq1  TCCCCTTTGGGATATTTGAACAGTGTTTGGGTAACAGTAGTAGCCAGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTTTGGGATATTTGAACAGTGTTTGGGTAACAGTAGTAGCCAGTCT  100

seq1  GGGTTCTTTTGATTGGTCTTTCCTTACCCCAAAACTACAGTCAGGTTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTTTTGATTGGTCTTTCCTTACCCCAAAACTACAGTCAGGTTCCA  150

seq1  TTATCTGCTTCCTGTCCATTTCTTTGTGCTCCCGTTTCGGTTGATAGTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTGCTTCCTGTCCATTTCTTTGTGCTCCCGTTTCGGTTGATAGTCT  200

seq1  CACAGCCTTTTGACTAAGTGGGTGTCTTAGTTCTGTTCTCTTGCTGTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCCTTTTGACTAAGTGGGTGTCTTAGTTCTGTTCTCTTGCTGTGAA  250

seq1  ACAACACCATGATCAAGGAAAAAACATTTATTTGAGGGCTTGCTTAGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACCATGATCAAGGAAAAAACATTTATTTGAGGGCTTGCTTAGAGT  300

seq1  TTCAGAGGGTTTTTTGACTGTCACAGCAAGGAGCGTGGGCCAGTAGGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGGGTTTTTTGACTGTCACAGCAAGGAGCGTGGGCCAGTAGGCAG  350

seq1  AGCCTGGTGCTGGAGCAGTAGCTAAGAGCTTACATTCTAATTCACAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTGCTGGAGCAGTAGCTAAGAGCTTACATTCTAATTCACAAGCA  400

seq1  TGTGGCAGAAAGATAGCAAGACTGGCTTGGTGTGGGCTTTTGAAACCTCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCAGAAAGATAGCAAGACTGGCTTGGTGTGGGCTTTTGAAACCTCG  450

seq1  TAGTCCATCTCCAGTACACTTGGCCACACCTCAAAATTCTTCCTAAGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCATCTCCAGTACACTTGGCCACACCTCAAAATTCTTCCTAAGTAG  500

seq1  TCCACCAATGGGAGCCAGACATTTTAAATAGACGATCCTGTGGGAGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCAATGGGAGCCAGACATTTTAAATAGACGATCCTGTGGGAGCCAT  550

seq1  CCCCATTAAACTGAAGTGGGCTGATAGCCTCCATCCATCCTCTTACCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTAAACTGAAGTGGGCTGATAGCCTCCATCCATCCTCTTACCCTC  600

seq1  AGGTTCGTCAGGTTCTGTTGGGTCTCATTTGATTAGTCCTTCCTGTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCGTCAGGTTCTGTTGGGTCTCATTTGATTAGTCCTTCCTGTCCAT  650

seq1  ATCTTACCTTCCATGGCCCGTCGGGCTTTAGCAATAGAGTCACACTCACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACCTTCCATGGCCCGTCGGGCTTTAGCAATAGAGTCACACTCACA  700

seq1  TCTTCACCTGCAGTCTGTGACTCTTGGTTCTTCATTGCTTTCTTGTAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACCTGCAGTCTGTGACTCTTGGTTCTTCATTGCTTTCTTGTAGCC  750

seq1  TGCAGATCAAGATCCTACTTTCTTGTCAGCATTCAAGCCTTATGACAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATCAAGATCCTACTTTCTTGTCAGCATTCAAGCCTTATGACAGTA  800

seq1  AGCTGTGCAGCAGCTTAATCTAGACAGTAGAGCCTTGCTCTTCTCAGACC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGCAGCAGCTTAATCTAGACAGTAGAGCCTTGCTCTTCTCAGACC  850

seq1  GAGACTTGTGTGTGTGTT--GGGGGGGGAGGATGTGCATGTGTGTGGAGG  898
      ||||||||||||||||||  ||||||||||||                  
seq2  GAGACTTGTGTGTGTGTTGGGGGGGGGGAGGA------------------  882

seq1  CCAGAGGTCAGCTTTGAAGATGTCTACTTTGTTTTTTGAGACTGATTCTC  948
                                                        
seq2  --------------------------------------------------  882

seq1  TGACTAGGACATGGAGCCAGGGAGCCACAAGGATTCACTTGTCTCTGTCT  998
                                                        
seq2  --------------------------------------------------  882

seq1  CTGCAGTGCTGGGATTACAAGCACGAGCTACCGTGCTTGGTTTTCTTTCT  1048
                                                        
seq2  --------------------------------------------------  882

seq1  TTCTTTTTTTTAAATAATAATAGTTCTGTGGTTGAATTCAGGTCTTCATG  1098
                                                        
seq2  --------------------------------------------------  882

seq1  CTGGTGTGGAAAGTACTTCACTGATTGAGCCATCTCCTGCCCAAGACTTT  1148
                                                        
seq2  --------------------------------------------------  882

seq1  TGAATCTCACTCTTGAATGTTCACTTCTATAAAATGTCTGTCTGGGGCTT  1198
                                                        
seq2  --------------------------------------------------  882

seq1  TCATCACTTTATTGTCCTTTCGGCTTTGCTTAGGAGTTGAATTTAGTTTG  1248
                                                        
seq2  --------------------------------------------------  882

seq1  GTAGCAATTCTTTATGAATTTTGAGTTCATGAAGATGGGTACTAGAGTGA  1298
                                                        
seq2  --------------------------------------------------  882

seq1  GAGGAGGA  1306
              
seq2  --------  882