BAC Information

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BAC

Clone NameB6Ng01-109G10
Chromosome3 (Build37)
Map Location 88,442,684 - 88,618,403
singlet/doubletdoublet
Overlap geneArhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11
Upstream geneArhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2
Downstream gene5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3, LOC668078, Adar, Chrnb2, Ube2q1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109G10.bB6Ng01-109G10.g
ACCDH916320DH916321
length1,0961,143
definitionDH916320|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G10, 5' end.DH916321|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,442,684 - 88,443,785)(88,617,250 - 88,618,403)
sequence
gaattcaaatctcagcaaccacatggtggctcacaaccatccgtaacgag
atctgacgccctcttctggtgtgtctgaagacaactacagtgtacttaca
taaaataaataaataaataaataaatcttaaaaaaaaaaaaaaaaaaagt
aagatagccagggctatacagagaaactctacctcgaaaaaccaaaccaa
accaacaacaacaacaacaacaacaacaacaacaacaacaaaagtaaagc
aggcacaggcttatatctccagtgctgagaaagcagattctgagggttag
aactctgaggctgtttggggctttgtagtgagttcaacaccagtttaggt
tacatagagagacccaggagagacagagacagaaaagagagagagactgt
gcatcgagggactcgtgcacatctaaatggtcctggctggttccgatgct
tgggctcttgcctgtattgcatcaccgtcaatccttctggttttctagga
cggaaaacccagatattaacggttaggattcctcagcctaattcttcctt
tcccctcacaggacaagccctcagtggtgtccttgcagaacctcatcgta
agagacatagccaaccaggcgaaagggatgtttctgattagttctggacc
gcctgagatgtatgaggtgcatgcagcgtcccgagacgaccggactacct
ggatccgtgtcatccagcagagtgtgcgcctgtgagtgtgtacctgtgtg
tacatatggctttcaggtcctagtcggcatatttcctgggaactgagctc
atcaggagaggttggggcagaagctggggatagactagttgagtcaagac
agaaagttccacatgaaaagttctaatttatattcagataacccggctac
ccctccaggatggtggtggcagacctgtcagccgtgacacatgccagcca
cacatatatcactggcaataggaccagcttgagctgaggtcctttctcca
aaactacaacaggcctggcagcgcatgcccttaattcagacggtgggagg
cggtgcaggtggatttcttgtttgaatctgtctaggctccgactag
gaattcagtgccctcttctgacctccacaggccatgcacaaacatggtgc
acaaatgctcaggcacacacagatgcacatagaaattgacaaagccttta
gctcaggcacacacagatgcacatagaaattgacaaagcctttaaaaatg
agcccggcagtggtggtccacgcctttaatcccagcactcaggaggcaga
ggcaggcaaatttctgagttcgaggccagcatggtctatagagtgactta
taggacagccagttctacacagagaaactctgtctcaaaaaaccaaaaca
acaacaaccccgatctatttgtgaaatagtgaatgaataaggaagggttc
tagggacagggttcagtgagacatcagtgtctaacactgaaggaaggagg
cagaaaagcagggagaggaagacagacaggagtccatgactgaaagttag
taatttaggcctaattccaaaaaccaagaagtcagttccaaccctgctga
gtaacaccacagtaagcctaccaccttcccaaacacctgggctaccagga
aaagggataaaacacttttataacaaaagcctcccatcactgacagctga
gagggaaaggaggcagagggagttttcacacacactcactcactcacttt
aatcacgttgttaggagctctgttcaggttgaggttctttgattctcacc
gtcagctggtgagcagtcttacaagttacaaggtacttgctgatcagagg
cttaggaaaatcggtcccttcgaaatgcttcagtcctaaagccaacagac
tgagagagaaccaaagtcacatatgggttctgcaaggagctcttcaacct
gcatgcttcacagcctcctcccacacccttagagagttacagatcactgc
gtattttaataaccaaacatgaaaagctcaatgaccttgattatcaccag
cactactgaaaataatatgcttaaagcactaacattctggtgaaggaaaa
aaaaaaattcaagcaactgctactctgacaccgagggggctgaggcagaa
atgccaaggcaagaccagcctggctcttggcacagctaacctcattggtt
caatgcttgcctacttatggagaaccctgggaatgaacttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88442684_88443785
seq2: B6Ng01-109G10.b_50_1145

seq1  GAATTCAAATCTCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCTCAGCAACCACATGGTGGCTCACAACCATCCGTAACGAG  50

seq1  ATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAACTACAGTGTACTTACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACGCCCTCTTCTGGTGTGTCTGAAGACAACTACAGTGTACTTACA  100

seq1  TAAAATAAATAAATAAATAAATAAATCTTAAAAAAAAAAAAAAAAAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAAATAAATAAATAAATAAATCTTAAAAAAAAAAAAAAAAAAAGT  150

seq1  AAGATAGCCAGGGCTATACAGAGAAACTCTACCTCGAAAAACCAAACCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGCCAGGGCTATACAGAGAAACTCTACCTCGAAAAACCAAACCAA  200

seq1  ACCAACAACAACAACAACAACAACAACAACAACAACAACAAAAGTAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAACAACAACAACAACAACAACAACAACAACAACAAAAGTAAAGC  250

seq1  AGGCACAGGCTTATATCTCCAGTGCTGAGAAAGCAGATTCTGAGGGTTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGGCTTATATCTCCAGTGCTGAGAAAGCAGATTCTGAGGGTTAG  300

seq1  AACTCTGAGGCTGTTTGGGGCTTTGTAGTGAGTTCAACACCAGTTTAGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGAGGCTGTTTGGGGCTTTGTAGTGAGTTCAACACCAGTTTAGGT  350

seq1  TACATAGAGAGACCCAGGAGAGACAGAGACAGAAAAGAGAGAGAGACTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGAGAGACCCAGGAGAGACAGAGACAGAAAAGAGAGAGAGACTGT  400

seq1  GCATCGAGGGACTCGTGCACATCTAAATGGTCCTGGCTGGTTCCGATGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGAGGGACTCGTGCACATCTAAATGGTCCTGGCTGGTTCCGATGCT  450

seq1  TGGGCTCTTGCCTGTATTGCATCACCGTCAATCCTTCTGGTTTTCTAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTTGCCTGTATTGCATCACCGTCAATCCTTCTGGTTTTCTAGGA  500

seq1  CGGAAAACCCAGATATTAACGGTTAGGATTCCTCAGCCTAATTCTTCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAAACCCAGATATTAACGGTTAGGATTCCTCAGCCTAATTCTTCCTT  550

seq1  TCCCCTCACAGGACAAGCCCTCAGTGGTGTCCTTGCAGAACCTCATCGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCACAGGACAAGCCCTCAGTGGTGTCCTTGCAGAACCTCATCGTA  600

seq1  AGAGACATAGCCAACCAGGCGAAAGGGATGTTTCTGATTAGTTCTGGACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATAGCCAACCAGGCGAAAGGGATGTTTCTGATTAGTTCTGGACC  650

seq1  GCCTGAGATGTATGAGGTGCATGCAGCGTCCCGAGACGACCGGACTACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGATGTATGAGGTGCATGCAGCGTCCCGAGACGACCGGACTACCT  700

seq1  GGATCCGTGTCATCCAGCAGAGTGTGCGCCTGTGAGTGTGTACCTGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCGTGTCATCCAGCAGAGTGTGCGCCTGTGAGTGTGTACCTGTGTG  750

seq1  TACATATGGC-TTCAGGTCCTAGTCGGCATATTTCCTGGGAACTGAGCTC  799
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TACATATGGCTTTCAGGTCCTAGTCGGCATATTTCCTGGGAACTGAGCTC  800

seq1  ATCAGGAGAGGTTGGGGCAGAAGCTGGGGATAGACTAGATGAGTCAAGAC  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATCAGGAGAGGTTGGGGCAGAAGCTGGGGATAGACTAGTTGAGTCAAGAC  850

seq1  AGAAAGTT-CACATGAAAAGTTCTAATTTATATCCAGATAACCCGGCTAC  898
      |||||||| |||||||||||||||||||||||| ||||||||||||||||
seq2  AGAAAGTTCCACATGAAAAGTTCTAATTTATATTCAGATAACCCGGCTAC  900

seq1  CCCTCCAGGATGGTGGTGGCAGACCTGTCAGCCGTGACACAGTGCCAGCC  948
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCCTCCAGGATGGTGGTGGCAGACCTGTCAGCCGTGACACA-TGCCAGCC  949

seq1  ACACATATATCACTGGCAAATAGGACCAGCTTGAGCTGAGGTCCTTTCTC  998
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACACATATATCACTGGC-AATAGGACCAGCTTGAGCTGAGGTCCTTTCTC  998

seq1  AAAAACTACAACAGGCCTGGCAGCGCATGCCTTTAATTTCAGCACGTGGG  1048
       |||||||||||||||||||||||||||||| |||| |||||   |||||
seq2  CAAAACTACAACAGGCCTGGCAGCGCATGCCCTTAA-TTCAGACGGTGGG  1047

seq1  AGGCAGAGGCAGGTGGATCTCTTGAGTTTGAAGCCAGCCTAGGCTACAGA  1098
      |||| |  |||||||||| ||||  |||||||  | | ||||||| | ||
seq2  AGGC-GGTGCAGGTGGATTTCTT--GTTTGAA-TCTGTCTAGGCT-CCGA  1092

seq1  CTAG  1102
      ||||
seq2  CTAG  1096

seq1: chr3_88617250_88618403
seq2: B6Ng01-109G10.g_69_1211 (reverse)

seq1  GAGAGAGTTCAATCCCAGGGTCTTCCATATGTTAGGCAAGCACTGTAACC  50
      |||| |||||| |||||||||  |||||| | |||||||||| || ||||
seq2  GAGA-AGTTCATTCCCAGGGTTCTCCATAAG-TAGGCAAGCATTG-AACC  47

seq1  AATGA-GTTAGCTTGTGCCAGGGAGCCAGGCTGGTCTTGACCTTGGCATC  99
      ||||| |||||| |||||||  ||||||||||||||||| ||||||||| 
seq2  AATGAGGTTAGC-TGTGCCA-AGAGCCAGGCTGGTCTTG-CCTTGGCAT-  93

seq1  TCCTGCCTCAGCCACCTCGGTGTTCAGAGTATGCAGTTGCTTGAATTTTT  149
      | ||||||||||| |||||||| |||||||| ||||||||||||||||||
seq2  TTCTGCCTCAGCCCCCTCGGTG-TCAGAGTA-GCAGTTGCTTGAATTTTT  141

seq1  TTTTTTTCTGTCACCAAGAATGTTAGTGCTTTAAGCATATTTATTTTCAG  199
      |||||| || ||||| ||||||||||||||||||||||| ||||||||||
seq2  TTTTTTCCT-TCACC-AGAATGTTAGTGCTTTAAGCATA-TTATTTTCAG  188

seq1  TAGTGCTGGTGATTAATCCAGGGTCATTGAGCTTTTCATGTTTGGTTATT  249
      |||||||||||| |||| || |||||||||||||||||||||||||||||
seq2  TAGTGCTGGTGA-TAAT-CAAGGTCATTGAGCTTTTCATGTTTGGTTATT  236

seq1  AAAATACGCAGTGATCTGTAACTCTCTAAGGGTGTGGGAGGAGGCTGTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATACGCAGTGATCTGTAACTCTCTAAGGGTGTGGGAGGAGGCTGTGA  286

seq1  AGCATGCAGGTTGAAGAGCTCCTTGCAGAA-CCATATGTGACTTTGGTTC  348
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCATGCAGGTTGAAGAGCTCCTTGCAGAACCCATATGTGACTTTGGTTC  336

seq1  TCTCTCAGTCTGTTGGCTTTAGGACTGAAGCATTTCGAAGGGACCGATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGTCTGTTGGCTTTAGGACTGAAGCATTTCGAAGGGACCGATTT  386

seq1  TCCTAAGCCTCTGATCAGCAAGTACCTTGTAACTTGTAAGACTGCTCACC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGCCTCTGATCAGCAAGTACCTTGTAACTTGTAAGACTGCTCACC  436

seq1  AGCTGACGGTGAGAATC-AAGAACCTCAACCTGAACAGAGCTCCTAACAA  497
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCTGACGGTGAGAATCAAAGAACCTCAACCTGAACAGAGCTCCTAACAA  486

seq1  CGTGATTAAAGTGAGTGAGTGAGTGTGTGTGAAAACTCCCTCTGCCTCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGATTAAAGTGAGTGAGTGAGTGTGTGTGAAAACTCCCTCTGCCTCCT  536

seq1  TTCCCTCTCAGCTGTCAGTGATGGGAGGCTTTTGTTATAAAAGTGTTTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCTCAGCTGTCAGTGATGGGAGGCTTTTGTTATAAAAGTGTTTTA  586

seq1  TCCCTTTTCCTGGTAGCCCAGGTGTTTGGGAAGGTGGTAGGCTTACTGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTTCCTGGTAGCCCAGGTGTTTGGGAAGGTGGTAGGCTTACTGTG  636

seq1  GTGTTACTCAGCAGGGTTGGAACTGACTTCTTGGTTTTTGGAATTAGGCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTACTCAGCAGGGTTGGAACTGACTTCTTGGTTTTTGGAATTAGGCC  686

seq1  TAAATTACTAACTTTCAGTCATGGACTCCTGTCTGTCTTCCTCTCCCTGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTACTAACTTTCAGTCATGGACTCCTGTCTGTCTTCCTCTCCCTGC  736

seq1  TTTTCTGCCTCCTTCCTTCAGTGTTAGACACTGATGTCTCACTGAACCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCCTCCTTCCTTCAGTGTTAGACACTGATGTCTCACTGAACCCT  786

seq1  GTCCCTAGAACCCTTCCTTATTCATTCACTATTTCACAAATAGATCGGGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTAGAACCCTTCCTTATTCATTCACTATTTCACAAATAGATCGGGG  836

seq1  TTGTTGTTGTTTTGGTTTTTTGAGACAGAGTTTCTCTGTGTAGAACTGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTTTGGTTTTTTGAGACAGAGTTTCTCTGTGTAGAACTGGC  886

seq1  TGTCCTATAAGTCACTCTATAGACCATGCTGGCCTCGAACTCAGAAATTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTATAAGTCACTCTATAGACCATGCTGGCCTCGAACTCAGAAATTT  936

seq1  GCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGGACCACCACTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGGACCACCACTG  986

seq1  CCGGGCTCATTTTTAAAGGCTTTGTCAATTTCTATGTGCATCTGTGTGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGCTCATTTTTAAAGGCTTTGTCAATTTCTATGTGCATCTGTGTGTG  1036

seq1  CCTGAGCTAAAGGCTTTGTCAATTTCTATGTGCATCTGTGTGTGCCTGAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTAAAGGCTTTGTCAATTTCTATGTGCATCTGTGTGTGCCTGAG  1086

seq1  CATTTGTGCACCATGTTTGTGCATGGCCTGTGGAGGTCAGAAGAGGGCAC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGCACCATGTTTGTGCATGGCCTGTGGAGGTCAGAAGAGGGCAC  1136

seq1  TGAATTC  1154
      |||||||
seq2  TGAATTC  1143