BAC Information

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BAC

Clone NameB6Ng01-109I11
Chromosome3 (Build37)
Map Location 63,138,836 - 63,139,836
singlet/doubletsinglet
Overlap geneMme
Upstream gene4631416L12Rik, Dhx36, Gpr149, LOC676984, LOC666967
Downstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109I11.bB6Ng01-109I11.g
ACCDH916413DH916414
length1,001993
definitionDH916413|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I11, 5' end.DH916414|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttatgttagataccattcttttatcagatgtaggattca
taaagatcttttcccaatctgtgggtggacatttggtcttattgacagtg
tcctttgccttatagaagtatttcaattttatgaggtcccattttttgat
tgttgatcttagaacataagccattgatgctgtgttcaggaaagtttccc
ttgtgtctgtgttcatagatttcccccactttctcttctattaaattcag
tgtatctagttttatgtggaggtccgtgatccacttggacttgagcttta
tataaggagataagaatggatcaatttacaataaatatttaagatgattt
ttttaaaaaggatggattaatttgtcttcttctacatgccaaccgctggt
tgagccagcaccatttgttgaaaatgctgtttttttttccccactggatg
gtttcagttcctttgtcaaagaccaaatgaccataggtgtttggggtcat
ttttgggtcttcaattctattttatttatctacctgcctgtctctgttcc
aatactgtgtgttctggatttcctggatgttttgggttaggaccttttta
tattttgcattttctttgactgttgtgccaatgtttactatggtatcttc
tgcagccaacagtctctcttctatctcttgtattctgtttgtgatgcttg
catctatgactcttgatctctttcctaggtttttctaactccagggttgt
ctccctttgtgatttctttatttttttctagtccatttttagatcctgga
tggttttgtttattcccttcacctgtttggttgtgttttcctgtaatttt
taaaggatttttgtgttcctctttaagggcttctagctgtttcctgtgtt
ctcctgtatttctttaaggagttatttatgtctttcttaaagtctctgtc
atcatcaggagatgtgatttaatctgattcttgcgttcctgtgttaaggg
a
gaattcatgtcagtgtgaccacttttccaggtggtgggaaatcagagaca
acagcatttgtcctgtcatttaactcaagtaatgcagtaatagaagagac
aagagtgaaaggggaaatatagtggagggacaaagtgtaaactgaggaac
caataaatgataccaataaaatggtgatgtgataatgagaaggtaagcag
atgagccatttagatttcattccagctggctttttaaaagatctctctgg
ctgcagtgtgtagacggtactataatatagaactcagaggaggttgtttg
gtcatttatgtgaaagaggataatcgaccctgatgagggcaagtggatct
aagataacttgcaagatagcccatttgttatagtggagatttgtacttta
agcttctcagctaatacatatagcctatgtagtttctctgtgtacatatg
gtacatatggtgctgacatacatacagtacaaggagaactattgacctca
ttttctttctggattccagagggtttacccaaaggtcctggtatatgcat
ttaacaaaacataaagggccattttattttcaacttagtaaatttgagaa
aagaagttttagagattgaaagcagtttgtgaaaaatctggttcccaacg
tatacagtaaaacattgaaaatcttgtataaacttccaggttcttttaga
caacacaacagcctcagtccccttcatgagtcaaggtggatctcctcggg
tcctgtgttcctgttatagagttgtttttaggttcagctatgtctactct
atggtccctaggaagaggtgtgcaattctacatgcacagtccctctgtag
aaagcaagtctctgtgtcagcagcatatgttgtttaatggaaagtttctg
agcctttagatgggaagcatctttcctgcttcatgtcacattttctattt
ggagacttggtagaatctaccagtacaacttgcataaacacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_63138836_63139836
seq2: B6Ng01-109I11.g_66_1058

seq1  GAATTCATGTCAGTGTGACCACTTTTCCAGGTGGTGGGAAATCAGAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTCAGTGTGACCACTTTTCCAGGTGGTGGGAAATCAGAGACA  50

seq1  ACAGCATTTGTCCTGTCATTTAACTCAAGTAATGCAGTAATAGAAGAGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCATTTGTCCTGTCATTTAACTCAAGTAATGCAGTAATAGAAGAGAC  100

seq1  AAGAGTGAAAGGGGAAATATAGTGGAGGGACAAAGTGTAAACTGAGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGAAAGGGGAAATATAGTGGAGGGACAAAGTGTAAACTGAGGAAC  150

seq1  CAATAAATGATACCAATAAAATGGTGATGTGATAATGAGAAGGTAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAATGATACCAATAAAATGGTGATGTGATAATGAGAAGGTAAGCAG  200

seq1  ATGAGCCATTTAGATTTCATTCCAGCTGGCTTTTTAAAAGATCTCTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCATTTAGATTTCATTCCAGCTGGCTTTTTAAAAGATCTCTCTGG  250

seq1  CTGCAGTGTGTAGACGGTACTATAATATAGAACTCAGAGGAGGTTGTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTGTGTAGACGGTACTATAATATAGAACTCAGAGGAGGTTGTTTG  300

seq1  GTCATTTATGTGAAAGAGGATAATCGACCCTGATGAGGGCAAGTGGATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTATGTGAAAGAGGATAATCGACCCTGATGAGGGCAAGTGGATCT  350

seq1  AAGATAACTTGCAAGATAGCCCATTTGTTATAGTGGAGATTTGTACTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAACTTGCAAGATAGCCCATTTGTTATAGTGGAGATTTGTACTTTA  400

seq1  AGCTTCTCAGCTAATACATATAGCCTATGTAGTTTCTCTGTGTACATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCAGCTAATACATATAGCCTATGTAGTTTCTCTGTGTACATATG  450

seq1  GTACATATGGTGCTGACATACATACAGTACAAGGAGAACTATTGACCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATATGGTGCTGACATACATACAGTACAAGGAGAACTATTGACCTCA  500

seq1  TTTTCTTTCTGGATTCCAGAGGGTTTACCCAAAGGTCCTGGTATATGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTCTGGATTCCAGAGGGTTTACCCAAAGGTCCTGGTATATGCAT  550

seq1  TTAACAAAACATAAAGGGCCATTTTATTTTCAACTTAGTAAATTTGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACAAAACATAAAGGGCCATTTTATTTTCAACTTAGTAAATTTGAGAA  600

seq1  AAGAAGTTTTAGAGATTGAAAGCAGTTTGTGAAAAATCTGGTTCCCAACG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTTTTAGAGATTGAAAGCAGTTTGTGAAAAATCTGGTTCCCAACG  650

seq1  TATACAGTAAAACATTGAAAATCTTGTATAAACTTCCAGGTTCTTTTAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGTAAAACATTGAAAATCTTGTATAAACTTCCAGGTTCTTTTAGA  700

seq1  CAACACAACAGCCTCAGTCCCCTTCATGAGTCAAGGTGGATCTCCTCGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACAACAGCCTCAGTCCCCTTCATGAGTCAAGGTGGATCTCCTCGGG  750

seq1  TCCTGTGTTCCTGTTATAGAGTTGTTTTTAGGTTCAGCTATGTCTACTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGTTCCTGTTATAGAGTTGTTTTTAGGTTCAGCTATGTCTACTCT  800

seq1  ATGGTCCCTAGGAAGAGGTGTGCAATTCTACATGCACAGTCCCTCTGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCCCTAGGAAGAGGTGTGCAATTCTACATGCACAGTCCCTCTGTAG  850

seq1  AAAGCAAGTCTCTGTGTCAGCAGCAATATGTTGTTTAATGGAAAGTTTCT  900
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AAAGCAAGTCTCTGTGTCAGCAGC-ATATGTTGTTTAATGGAAAGTTTCT  899

seq1  GAGCCCTTTAGATGGGAAGCATCTTTCCTGCTTCATGTCACATTTTTCTA  950
      ||| |||||||||||||||||||||||||||||||||||||| |||||| 
seq2  GAG-CCTTTAGATGGGAAGCATCTTTCCTGCTTCATGTCACA-TTTTCT-  946

seq1  ATTTGGTAGACTTTGTAGATTCTACCAGTAAACATCCTGCATAACACACA  1000
      |||||| |||||| ||||| |||||||||  ||| | ||||||| |||||
seq2  ATTTGG-AGACTTGGTAGAATCTACCAGT--ACAACTTGCATAA-ACACA  992

seq1  A  1001
      |
seq2  A  993