BAC Information

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BAC

Clone NameB6Ng01-109K17
Chromosome3 (Build37)
Map Location 57,366,777 - 57,367,989
singlet/doubletsinglet
Overlap geneWwtr1
Upstream geneLOC100040139, LOC666585, Tm4sf1, LOC383862, Tm4sf4
Downstream geneCommd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594, LOC100040216, 4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109K17.bB6Ng01-109K17.g
ACCDH916516DH916517
length1,198225
definitionDH916516|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K17, 5' end.DH916517|Mus musculus domesticus DNA, BAC clone: B6Ng01-109K17, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacagaatacttgctcttgacttcgaatttcagccaggacagaca
aggagtctgagctctgtatctgctcccttaactctttgaacctttatttt
tctcttcccatccttcttagtatacatttaaaaaaaaaaaaaatgactgc
cacaaagtctgaacatttcaattcagcccacatgacatttccttcacatt
taattacttccatacaatttacatccgctagtcacgctagaccccagagt
attaaacattctccttgacaaagacgctcttgtccaataataacccccat
aatcaaagttcaggaattatgggtaaagcccagctggctgatggatgaaa
caaacaggtttttaaattcacccaagcaggctgcagaccagaaacaaacc
aaagcaggccactccaacatcacgcttgagaacaaaggcaggcaacattg
cataaggagcagtctgcctgcaaccacctgcttcctggggcttgccctga
ggagccagcatgccagcatacctgaagacctgttctgttttcaagggttc
tagggtcagctggtgtttaaatgtttttaaagtagtaggtgtgctctttt
atctcccagcaaactcaggcaacagcgattatctatcctgtaacgaagga
aatctacaaaacccctcaagtcttttatgagtatttctagtttctagaca
atcgttcgaccttatattaccttcctcgcctttcccaaaaatttagcttt
gtctaaaagttcaggatagcacaagagtcctaacacagcttcttgggtct
cccttactctcatagggccccctttcatacgaatcttgccatttttcttg
caaaaatccccttaagactatttatagtttcatgcactatctctcctcat
gctcaagcccattcagactgcaagtacaaacaacctgaactgtctgtctc
tcaggtcacactcatttttcagatgactcataaagttccaatagcctgca
catctttaaaacagctgatctgtaaccgacaaggttaggacgatacgagc
cacacccatttataccccgcgacttgaaacttgaagtttttgcttctagc
caagaactactttgatctgtctctaacaaaagcaacctctagaccaggta
tggttggtgtacaccacattttaatcttacaattcaagactcttgagt
tgtcctgtggcaaaggcctagagtcctgtcaaaagctgatcagttacctt
cagagcagactttctactcttgttccaggccccccttttttgacaactca
agttgcccacatctaacactgaaatttttgcctaatagcctaatggcttc
tgggagcagatttattcacccatagggcataactacatttcaaagcactt
ttatggtgtgtgtgtgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_57366777_57367989
seq2: B6Ng01-109K17.b_47_1244

seq1  GAATTCACAGAATACTTGCTCTTGACTTCGAATTTCAGCCAGGACAGACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAATACTTGCTCTTGACTTCGAATTTCAGCCAGGACAGACA  50

seq1  AGGAGTCTGAGCTCTGTATCTGCTCCCTTAACTCTTTGAACCTTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTCTGAGCTCTGTATCTGCTCCCTTAACTCTTTGAACCTTTATTTT  100

seq1  TCTCTTCCCATCCTTCTTAGTATACATTTAAAAAAAAAAAAAATGACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCCATCCTTCTTAGTATACATTTAAAAAAAAAAAAAATGACTGC  150

seq1  CACAAAGTCTGAACATTTCAATTCAGCCCACATGACATTTCCTTCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTCTGAACATTTCAATTCAGCCCACATGACATTTCCTTCACATT  200

seq1  TAATTACTTCCATACAATTTACATCCGCTAGTCACGCTAGACCCCAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTACTTCCATACAATTTACATCCGCTAGTCACGCTAGACCCCAGAGT  250

seq1  ATTAAACATTCTCCTTGACAAAGACGCTCTTGTCCAATAATAACCCCCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACATTCTCCTTGACAAAGACGCTCTTGTCCAATAATAACCCCCAT  300

seq1  AATCAAAGTTCAGGAATTATGGGTAAAGCCCAGCTGGCTGATGGATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGTTCAGGAATTATGGGTAAAGCCCAGCTGGCTGATGGATGAAA  350

seq1  CAAACAGGTTTTTAAATTCACCCAAGCAGGCTGCAGACCAGAAACAAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGGTTTTTAAATTCACCCAAGCAGGCTGCAGACCAGAAACAAACC  400

seq1  AAAGCAGGCCACTCCAACATCACGCTTGAGAACAAAGGCAGGCAACATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGCCACTCCAACATCACGCTTGAGAACAAAGGCAGGCAACATTG  450

seq1  CATAAGGAGCAGTCTGCCTGCAACCACCTGCTTCCTGGGGCTTGCCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGAGCAGTCTGCCTGCAACCACCTGCTTCCTGGGGCTTGCCCTGA  500

seq1  GGAGCCAGCATGCCAGCATACCTGAAGACCTGTTCTGTTTTCAAGGGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCAGCATGCCAGCATACCTGAAGACCTGTTCTGTTTTCAAGGGTTC  550

seq1  TAGGGTCAGCTGGTGTTTAAATGTTTTTAAAGTAGTAGGTGTGCTCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCAGCTGGTGTTTAAATGTTTTTAAAGTAGTAGGTGTGCTCTTTT  600

seq1  ATCTCCCAGCAAACTCAGGCAACAGCGATTATCTATCCTGTAACGAAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCAGCAAACTCAGGCAACAGCGATTATCTATCCTGTAACGAAGGA  650

seq1  AATCTACAAAACCCCTCAAGTCTTTTATGAGTATTTCTAG-TTCTAGACA  699
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AATCTACAAAACCCCTCAAGTCTTTTATGAGTATTTCTAGTTTCTAGACA  700

seq1  ATCGTTCGACCTTATATTACCTTCCTCGCCTTTCCCAAAAATTTAGCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTCGACCTTATATTACCTTCCTCGCCTTTCCCAAAAATTTAGCTTT  750

seq1  GTCTAAAAGTTCAGGATAGCACAAGAGTCCTAACACAGCTTCTTGGGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAAGTTCAGGATAGCACAAGAGTCCTAACACAGCTTCTTGGGTCT  800

seq1  CCCTTACTCTCATAGGGCCCCCTTTCATACGAATCTTGCCATTTTTCTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTACTCTCATAGGGCCCCCTTTCATACGAATCTTGCCATTTTTCTTG  850

seq1  CAAAAATCCCCTTAAGACTATTTATAGTTTCATGCACTATCTCTCCTCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATCCCCTTAAGACTATTTATAGTTTCATGCACTATCTCTCCTCAT  900

seq1  GCTCAAAGCCCATTCAGACTGCCAAGTACAAACAACCTGAACTGTCTGTC  949
      |||| |||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCTC-AAGCCCATTCAGACTG-CAAGTACAAACAACCTGAACTGTCTGTC  948

seq1  TCTCAGGGTCACACTCATTTTTCAGATGACTCATTAAAGTTCCAATAGCC  999
      ||||| ||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCTCA-GGTCACACTCATTTTTCAGATGACTCA-TAAAGTTCCAATAGCC  996

seq1  TGCACCATCTTTAAAACAGCTGATCTGTCAACCGACAAAGGTTAGGACGA  1049
      |||| ||||||||||||||||||||||| ||||||| |||||||||||| 
seq2  TGCA-CATCTTTAAAACAGCTGATCTGT-AACCGAC-AAGGTTAGGACG-  1042

seq1  ATACAGACCCACA-CCACTTATACCACCGCGACCTTAGAAACTTAGATGT  1098
      |||| || ||||| ||| ||||||| |||||||  | |||||||  |  |
seq2  ATAC-GAGCCACACCCATTTATACC-CCGCGAC--TTGAAACTTGAAGTT  1088

seq1  TTTGCTTCTAGCCAAAGAACTACTTTTGATCTG-CTCTAACAAAAAGCAA  1147
      ||||||||||||| ||||||||| ||||||||| ||||||| ||||||||
seq2  TTTGCTTCTAGCC-AAGAACTAC-TTTGATCTGTCTCTAAC-AAAAGCAA  1135

seq1  -CTCTGAGCCAGGTATGGTGGTGGGTGACACACACA-TTTAATCTTAGCA  1195
       ||||   |||||||||||  |||   |||| |||| ||||||||||  |
seq2  CCTCTAGACCAGGTATGGT--TGGTGTACAC-CACATTTTAATCTTACAA  1182

seq1  TTCAAGAACTCTGTGAGT  1213
      |||||| ||||| |||||
seq2  TTCAAG-ACTCT-TGAGT  1198