BAC Information

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BAC

Clone NameB6Ng01-109L07
Chromosome3 (Build37)
Map Location 117,076,975 - 117,078,214
singlet/doubletsinglet
Overlap genenone
Upstream geneCdc14a, Rtcd1, Dbt, LOC100043702, LOC100043705, Lrrc39, A930028L21Rik, Sass6, Hiat1, Slc35a3, Agl, LOC100043710, LOC100043250, Frrs1, Palmd, EG668749, 1700061I17Rik, LOC674908, D3Bwg0562e
Downstream gene4833424O15Rik, EG668759, Snx7, LOC100043260
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109L07.bB6Ng01-109L07.g
ACCDH916540DH916541
length1,2211,245
definitionDH916540|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L07, 5' end.DH916541|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggctaaaattcagaattagcgagggtgtgagagtgggtattct
aattcttgtgagccttgtgatctgtgtcatagctaactgactttgtcatt
aacactaaaacagccatgaacagcccaggaaagtataagcacactactgc
tccctattgagacagacacattgtctgttggtctgttgctctaaacactg
ctcaataagaccccaagtccaggaaggcatacttgtggcttaaagtgctt
cacttctaaaacaaggaaaaaaagtatcagaaagaccctcccccctcccc
ccccaccccaccctacacacacatgcacattgtggcaattttgggtcatt
ttttaggcatatcctgattcttcatggcccaatacaagttgacccaaggc
tcaatgacttgtaaggtagcatgatctgtagcagcaagaatttctcatct
attaactcagaactcttgtcatttcatcattccacatatagagaaaacag
agataaacaatttctttggaaccaatgctatgtgacatccttccctgagg
atggtagaggccatggaatagcaattatattcattctcaacacatgccac
gctgggggcctaagtgcagagaagctttcatctgttatacgtttttgtat
agttaaccctttcatgactgctcagatcctccgtctttggactagggtca
ttttgctggttagatttttttgtcaacttgacacaaactatgtgctgacc
caacacacaacatatacaattaaccaataaaacatgctacctccaattat
caccaatgaattgtgcgcataggcaagatgagttcttgccacctatatag
cttcagagtcactatagacatgggttggtggatgtccttgtcatcactcc
tgcctgcaatctgtggggtggcaccacattaagcattgatagtcatttgc
attaagactaattacagtctagatggaacatcacagaaataggtgtggac
tggaaatcagatagcacaactgctagcaccccatatcttacttccataga
aacaccacacggacacgtaacggatcgcacacgtacacgtacactacaac
acaatggttctggctatctacattaggcatttttaatggcatacagctca
gccagtcatcttgatagaggatcaaggaaggtaagtgactaaaatgatga
ggaggaatttctgtaaacaga
gaattccttacaaccccatgggacaaggaatagttgaacgtgctcatcgc
accttaaagaattggctttttaaaacaaaagaggggcagctatatccccc
aaggtcaccaaaggcccaccttgccttcaccttattcgtcctaaatttct
tcaagggccagtctgcagcggatcgccactggcatccagttacttctaat
tcttatgcattggtaaaatggaaggaccccctgactaatgaatggaaggg
tccagatccagttctaatttggggtaggggctcagtttgtgttttttcac
gagatgaagatggagcgcggtggctgccagagagattaattcgtcagatg
aacacagattctgactcttctggtaagtatcattctaaagactaaaattc
cttttgtgcttaaaattcagctgagagcaaaagctcccaaagctgttctc
cagctactctctgagccagctcccgacaggaggccggagactagcctcag
ctttacaatttgcacttgaataaagtacctagacttcccggaaagaagtt
ctgctttcctactttctcactgtcgagattttgtctttcaagcaggtaaa
tcaacattctcgaagcggaccagcggatgtgcatccccgcccccctagag
cacacaggtggctgctgttatctcctttccaaggacatttccagcacgtg
gctttcagtctgagttaaaaattaggtttaccaagagggctagaaaagta
gatatttctatattaataaagattggtttttattttgatagacaggctta
gtcccttagctgacctctggcttttcacccttgctgttactgcaaggtgt
ccttaggctgtggaaaaaacagggatgaggaggaacgacttgcagctcct
attctagccacaaatcggggtgttactaacgacataattcttgcttaggc
tttgctaatctgaggtgatattctcctttaggagctgcacagcactcaga
ctgtgcatactggttgtgatcgtacaaattcagtatgggcatcgcttgtg
cgaataactgcaggggaagttcagcttgacctttctgagttcctgtgaat
ataccggtttgaagaagttgtacatattttggtaaatcaaattttccgtc
ttgcctcactccccagaactgagccaggtgtgtcttaccgtaccacggga
gaatcggtgcctcgtccccccaagccagagttatatagcatcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_117076975_117078214
seq2: B6Ng01-109L07.b_50_1270 (reverse)

seq1  TCTGTTTATCAGTAAATTCTTCCCTCAATCATTTTTTATGCA-TTACATT  49
      |||||||| ||| |||||| | |||| ||||  |||||  || ||||  |
seq2  TCTGTTTA-CAG-AAATTCCT-CCTC-ATCA--TTTTAGTCACTTAC-CT  43

seq1  TCCTTGAATTCCTGTCATCAAGAATGACTGGCCTGTGA-CTGTATGCCAT  98
      |||||||  |||| | |||||| |||||||||   ||| |||||||||||
seq2  TCCTTGA--TCCTCT-ATCAAG-ATGACTGGC---TGAGCTGTATGCCAT  86

seq1  ATAAAATGCACTAATGTAGATAGCAGTAACAATTGTGTGTGTGTGTGTGC  148
        ||||||| ||||||||||||||   ||| ||||||| |||  |||| |
seq2  TAAAAATGC-CTAATGTAGATAGCCAGAACCATTGTGT-TGT-AGTGTAC  133

seq1  GTGTGCGTGTGCGTGTGCGTGTGCGTGTGCGTGTGGTGTTTCTATGGGAG  198
      |||| ||||||||  | ||| | ||||| |||||||||||||||||| ||
seq2  GTGTACGTGTGCG-ATCCGT-TACGTGTCCGTGTGGTGTTTCTATGGAAG  181

seq1  TAAGATATGGGGTGCTAGCAGTTTGTGCTATCTGATTTCCAGTCACAACC  248
      ||||||||||||||||||||| ||||||||||||||||||||||   |||
seq2  TAAGATATGGGGTGCTAGCAG-TTGTGCTATCTGATTTCCAGTCCACACC  230

seq1  TA-TTCTGTGATGTTCCATCTTAGACTGTAAATTAAGTCTTAATGCAAAT  297
      || ||||||||||||||||| ||||||||||  | |||||||||||||||
seq2  TATTTCTGTGATGTTCCATC-TAGACTGTAA--TTAGTCTTAATGCAAAT  277

seq1  GACTATCAATGCTTAATGTGGTGCCA-CCCACAGATTGCAGGCAGGAGTG  346
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GACTATCAATGCTTAATGTGGTGCCACCCCACAGATTGCAGGCAGGAGTG  327

seq1  ATGACAAGGACATCCACCAACCCATGTCTATAGTGACTCTGAAGCTATAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAGGACATCCACCAACCCATGTCTATAGTGACTCTGAAGCTATAT  377

seq1  AGGTGGCAAGAACTCATCTTGCCTATGCGCACAATTCATTGGTGATAATT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCAAGAACTCATCTTGCCTATGCGCACAATTCATTGGTGATAATT  427

seq1  GGAGGTAGCATGTTTTATTGGTTAATTGTATATGTTGTGTGTTGGGTCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTAGCATGTTTTATTGGTTAATTGTATATGTTGTGTGTTGGGTCAG  477

seq1  CACATAGTTTGTGTCAAGTTGACAAAAAAATCTAACCAGCAAAATGACCC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGTTTGTGTCAAGTTGACAAAAAAATCTAACCAGCAAAATGACCC  527

seq1  TAGTCCAAAGACGGAGGATCTGAGCAGTCATGAAAGGGTTAACTATACAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCAAAGACGGAGGATCTGAGCAGTCATGAAAGGGTTAACTATACAA  577

seq1  AAACGTATAACAGATGAAAGCTTCTCTGCACTTAGGCCCCCAGCGTGGCA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTATAACAGATGAAAGCTTCTCTGCACTTAGGCCCCCAGCGTGGCA  627

seq1  TGTGTTGAGAATGAATATAATTGCTATTCCATGGCCTCTACCATCCTCAG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTGAGAATGAATATAATTGCTATTCCATGGCCTCTACCATCCTCAG  677

seq1  GGAAGGATGTCACATAGCATTGGTTCCAAAGAAATTGTTTATCTCTGTTT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATGTCACATAGCATTGGTTCCAAAGAAATTGTTTATCTCTGTTT  727

seq1  TCTCTATATGTGGAATGATGAAATGACAAGAGTTCTGAGTTAATAGATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATATGTGGAATGATGAAATGACAAGAGTTCTGAGTTAATAGATGA  777

seq1  GAAATTCTTGCTGCTACAGATCATGCTACCTTACAAGTCATTGAGCCTTG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTCTTGCTGCTACAGATCATGCTACCTTACAAGTCATTGAGCCTTG  827

seq1  GGTCAACTTGTATTGGGCCATGAAGAATCAGGATATGCCTAAAAAATGAC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAACTTGTATTGGGCCATGAAGAATCAGGATATGCCTAAAAAATGAC  877

seq1  CCAAAATTGCCACAATGTGCATGTGTGTGTAGGGTGGGGTGGGGGGGGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTGCCACAATGTGCATGTGTGTGTAGGGTGGGGTGGGGGGGGAG  927

seq1  GGGGGAGGGTCTTTCTGATACTTTTTTTCCTTGTTTTAGAAGTGAAGCAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGGGTCTTTCTGATACTTTTTTTCCTTGTTTTAGAAGTGAAGCAC  977

seq1  TTTAAGCCACAAGTATGCCTTCCTGGACTTGGGGTCTTATTGAGCAGTGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCACAAGTATGCCTTCCTGGACTTGGGGTCTTATTGAGCAGTGT  1027

seq1  TTAGAGCAACAGACCAACAGACAATGTGTCTGTCTCAATAGGGAGCAGTA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCAACAGACCAACAGACAATGTGTCTGTCTCAATAGGGAGCAGTA  1077

seq1  GTGTGCTTATACTTTCCTGGGCTGTTCATGGCTGTTTTAGTGTTAATGAC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCTTATACTTTCCTGGGCTGTTCATGGCTGTTTTAGTGTTAATGAC  1127

seq1  AAAGTCAGTTAGCTATGACACAGATCACAAGGCTCACAAGAATTAGAATA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGTTAGCTATGACACAGATCACAAGGCTCACAAGAATTAGAATA  1177

seq1  CCCACTCTCACACCCTCGCTAATTCTGAATTTTAGCCTGAATTC  1240
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCTCACACCCTCGCTAATTCTGAATTTTAGCCTGAATTC  1221