BAC Information

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BAC

Clone NameB6Ng01-109L18
Chromosome3 (Build37)7 (Build37)
Map Location 41,059,197 - 41,059,737105,253,005 - 105,253,667
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109L18.bB6Ng01-109L18.g
ACCDH916561DH916562
length993663
definitionDH916561|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L18, 5' end.DH916562|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,197 - 41,059,737)(105,253,005 - 105,253,667)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatctgattt
tctggagtccaccttcttcagttctttatatatattagatattagtcccc
tatctgatttaggataggtaaagatcctttcccagtctgttggtggcctt
tttgtcttattgacggtgtcctttgccttacagaagctttgcaattttat
gaagtcccatttgtcaattatcaatcttacagcacaagccattgttgttc
tattcaggaaatttccccctgtgcccatatcttcgaggcttttccccact
ttttcctctataagtttcactggttctggttttatgtggagttccttgat
ccacttagatttgaccttagtacaaggagataggaatggatcaatttgca
ttcttctacatgttaaccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactggatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaattctattccactggt
ctacttgtctgtcgcttctgtagtacagctttaggtcaggcatggtgatt
ccaccagaggttcttttatccttgagaagagtttttgctatcctaggttt
tttgttatgccagatgaatttgcagattgctttttcaaattcattgaaga
attgagttggaattttgatggggattgcattgagtctgtagattgctttt
ggcaagatagccatttttactatattgatcctgccaatccatgagcatgg
gagatctttccatcttctgagatcttctttaatttctttcttcagagact
tgaagttcttttcatacagatcttttactttccttagttagagtctgcca
aggtattttatattatttgtgactattgagaaggtgttttatccctaatt
tcttctcagcctgtttatcttgtgtagagaaaggccattgact
gaattctatggagctgggggagggggagacaggacagaggccaagcagtt
tacaccaccttcctggctcctcacacctccttcctgggccgctagggcct
agtccacaaacagcaaagataatagtgcttctgtcccggagagggggagg
ggaaagttatcgcctctggagaatcctgtcaggtgtgcaggtcattgggg
cctgggatacactcggccaggtatgggttggacaccctgagccaccaggt
tccaaagaccacgagtgttctcttcacgacacatatcggagaagtgggac
ctggctacacagtggcagtcagactcaatgttaaatgacaggccaggtta
agaagtgcagccgaacagctccacctcctatgtgggaggatgtcctgctg
agggtagcggctctctggtcaaggtccacagcccacagcagaggccaaag
tgtaacaagcctagtatgggagcattggttctgaaggacagagtgacaga
gacagcgaaaaagacaggaagtgtctgaagactgacagagacaaaaaggg
cagagacacagaagaaagacagagaaaaggaggtagggagagagggcaag
acagcaaggtacatagaaatgccacagacagttctgaggaccgggtgggt
gtgtaggtggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059197_41059737
seq2: B6Ng01-109L18.b_50_590 (reverse)

seq1  AATAGAATTGAAGACTCAGAAACGAATCCACACACCTATGGTCACTTGAT  50
      ||||||||||||||| |||||| ||| |||||||||||||||||||||||
seq2  AATAGAATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGAT  50

seq1  CTTCGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCA  100
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAAGGGAGCTAAAACCATCCAGTGGAAAAAAGACAGCATTTTCA  100

seq1  ACAAATGGTGCTGGCACAACTGGTTGTTATCATGTAGAAGAATGCGAATT  150
      |||||||||||||||||||||||  |||| ||||||||||||||| ||||
seq2  ACAAATGGTGCTGGCACAACTGGCGGTTAACATGTAGAAGAATGCAAATT  150

seq1  GATCCACTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATTCCTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGA  200

seq1  ACGCCACATAAAACCAGAGACACTGAAACTTATAGAGGAGAAAGTGGGGA  250
      || |||||||||||||||  || |||||||||||||||| ||||||||||
seq2  ACTCCACATAAAACCAGAACCAGTGAAACTTATAGAGGAAAAAGTGGGGA  250

seq1  AAAGCCTTGAAGATATGGTCACAGGGGAAAAATTCCTGCATAGAACAGCA  300
      ||||||| |||||||||| |||||||| ||| |||||| |||||||| ||
seq2  AAAGCCTCGAAGATATGGGCACAGGGGGAAATTTCCTGAATAGAACAACA  300

seq1  ATGGCTTGTGCTGTAAGATTGAGAATAGACAAATGGGACCTCATGAAACT  350
      |||||||||||||||||||||| ||| |||||||||||| |||| ||| |
seq2  ATGGCTTGTGCTGTAAGATTGATAATTGACAAATGGGACTTCATAAAATT  350

seq1  GCAAAGCTTCTGCAAGGCAAAAGACACCGTCAATAAGACAAAAAGG-CAC  399
      |||||||||||| |||||||| |||||||||||||||||||||||| |||
seq2  GCAAAGCTTCTGTAAGGCAAAGGACACCGTCAATAAGACAAAAAGGCCAC  400

seq1  CAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  449
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGATAGGGGACTA  450

seq1  ATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAATCAAA  499
      ||||| ||||||||| ||||||| ||||||||||| |||||||||||| |
seq2  ATATCTAATATATATAAAGAACTGAAGAAGGTGGACTCCAGAAAATCAGA  500

seq1  TAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  541
      |||||||||| |||||||||||||||||||||||||||||||
seq2  TAACCCCATT-AAAAATGGGGCTCAGAGCTAAACAAAGAATT  541

seq1: chr7_105253005_105253667
seq2: B6Ng01-109L18.g_67_729

seq1  GAATTCTATGGAGCTGGGGGAGGGGGAGACAGGACAGAGGCCAAGCAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGAGCTGGGGGAGGGGGAGACAGGACAGAGGCCAAGCAGTT  50

seq1  TACACCACCTTCCTGGCTCCTCACACCTCCTTCCTGGGCCGCTAGGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCACCTTCCTGGCTCCTCACACCTCCTTCCTGGGCCGCTAGGGCCT  100

seq1  AGTCCACAAACAGCAAAGATAATAGTGCTTCTGTCCCGGAGAGGGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACAAACAGCAAAGATAATAGTGCTTCTGTCCCGGAGAGGGGGAGG  150

seq1  GGAAAGTTATCGCCTCTGGAGAATCCTGTCAGGTGTGCAGGTCATTGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTATCGCCTCTGGAGAATCCTGTCAGGTGTGCAGGTCATTGGGG  200

seq1  CCTGGGATACACTCGGCCAGGTATGGGTTGGACACCCTGAGCCACCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGATACACTCGGCCAGGTATGGGTTGGACACCCTGAGCCACCAGGT  250

seq1  TCCAAAGACCACGAGTGTTCTCTTCACGACACATATCGGAGAAGTGGGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGACCACGAGTGTTCTCTTCACGACACATATCGGAGAAGTGGGAC  300

seq1  CTGGCTACACAGTGGCAGTCAGACTCAATGTTAAATGACAGGCCAGGTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTACACAGTGGCAGTCAGACTCAATGTTAAATGACAGGCCAGGTTA  350

seq1  AGAAGTGCAGCCGAACAGCTCCACCTCCTATGTGGGAGGATGTCCTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGCAGCCGAACAGCTCCACCTCCTATGTGGGAGGATGTCCTGCTG  400

seq1  AGGGTAGCGGCTCTCTGGTCAAGGTCCACAGCCCACAGCAGAGGCCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAGCGGCTCTCTGGTCAAGGTCCACAGCCCACAGCAGAGGCCAAAG  450

seq1  TGTAACAAGCCTAGTATGGGAGCATTGGTTCTGAAGGACAGAGTGACAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAAGCCTAGTATGGGAGCATTGGTTCTGAAGGACAGAGTGACAGA  500

seq1  GACAGCGAAAAAGACAGGAAGTGTCTGAAGACTGACAGAGACAAAAAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCGAAAAAGACAGGAAGTGTCTGAAGACTGACAGAGACAAAAAGGG  550

seq1  CAGAGACACAGAAGAAAGACAGAGAAAAGGAGGTAGGGAGAGAGGGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACAGAAGAAAGACAGAGAAAAGGAGGTAGGGAGAGAGGGCAAG  600

seq1  ACAGCAAGGTACATAGAAATGCCACAGACAGTTCTGAGGACCGGGTGGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGGTACATAGAAATGCCACAGACAGTTCTGAGGACCGGGTGGGT  650

seq1  GTGTAGGTGGGGG  663
      |||||||||||||
seq2  GTGTAGGTGGGGG  663