BAC Information

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BAC

Clone NameB6Ng01-109P09
Chromosome3 (Build37)9 (Build37)
Map Location 41,058,559 - 41,058,740108,951,546 - 108,952,691
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109P09.bB6Ng01-109P09.g
ACCDH916721DH916722
length7551,125
definitionDH916721|Mus musculus domesticus DNA, BAC clone: B6Ng01-109P09, 5' end.DH916722|Mus musculus domesticus DNA, BAC clone: B6Ng01-109P09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,559 - 41,058,740)(108,951,546 - 108,952,691)
sequence
gaattcaaggcccatacttaaacataataaaagcaatatacagcaaacca
gtagccaacatcaaactaaatggaaagaaagttgaagcaataacattaaa
atcaagagctagacaaggctgcccacttcccctacctattcagtatagta
cgtgaagtcctaaccagagcaattagacaacaaaaggagatcaaggggat
acaaattggaaaggaagaagtcaaaatatcactatttgcagatgatatga
tagtatatataagtgacccctaaaattccaccagaaaactcctaaacctg
ataaacaacttcagtgaagtagctggatataaatttttttattttttttc
tttataatttggtttttattagatattttcttcatataaatttcaaatgc
tatcctgaaagtcccctatatgcttccccgccctgttcctctacccatcc
actcccacttcttggttctggcatccccctatactgggccatataaagtt
tgcaagaccaaggggcctctcttcccaatgatggctgactaggccatctg
ctacatatgcagctagagacacaagctctgggggtactggtagttcatat
tgtagttccaactatagggttgcagaccccttcagcttctttagctccta
cattggggggcagtgtgttccatccaatagatgactgtgagcaaggtgga
tataaaaattaactcaaacaaatcagtgggctttttttctacacaaaggg
ataaa
gaattctctttctagaggatttatgttatttcctgatgttagcctaagca
cagagactcatgattagaagggaagactattcttttctcccttcttcgtg
acaaatgtttcaggtcctgtccaagtgtatagaatcatcatggcccattt
tgtgggctttaccaccgtggccccccaaagcttctggcaatgatgcctgg
cttcctagatatccctccattacattagggaaggccactaggaggacttg
ggtggcaggcttatctccactgtctcttccctgctctctgaagactttgc
ataagatttttttttttttttaaagatagggtctgggtggggctggcgag
atggctcagtgtttaagggcactgtctgatctttcaaaggtcaggagtac
gattcccagcaaccacatggtggctcacaaccatctgtaattggatccaa
tgccctcttctggtgtgtcagcgacaggatgttcatatacgttaaataaa
taaatcttaaaaaaaaaaaaaagatagggtctggggtcgaacatggtagt
gcacatctttaatcccagcacacaggaggatgcaaagacagttggatctc
gtgaattcaaggcaagtttcaggatagccggatctacatagcagggagac
cccacctcagacaacaaaatagggtctgggatattcctctcttcaaaccc
ttttcactcttgggagttctacattttcatttgctctgctttaaagaaag
gaaaatggggctggagagatggctcagtagttagcactgactcttaagtc
tggagaggactgagtctcagaggactggagttcagttcccaacactcacc
tgacagctcaactgtctgtagttccagtcctatggggtccagtgcacctc
ctgactgctgcagcacacatgcactctcatgtagtcagatgcaaagtcat
cctcgggcccagtgcagcagcactatctcatacctcccactgctcgaaac
tagtgcctcagtacatctggtcctgctaacaattctctgaccgccagcct
gtaggagcggctgtgtgcccctccttggaatcgccaatggctgtcacctt
ttcccatcgaagcaatggtaaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058559_41058740
seq2: B6Ng01-109P09.b_249_807

seq1  GGATACAAATTGGAAAGGAAGAAGTGAAAATATCACTTTTTACAGATGAT  50
      ||||||||||||||||||||||||| ||||||||||| ||| ||||||||
seq2  GGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTATTTGCAGATGAT  50

seq1  ATGATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAG  100
      |||||||||||||||||||||||  |||||||||||||| ||||||||| 
seq2  ATGATAGTATATATAAGTGACCCCTAAAATTCCACCAGAAAACTCCTAAA  100

seq1  CCTGATAAACAGCTTCGGTGAAGTAGCTGGATATAAA-----------AT  139
      ||||||||||| |||| ||||||||||||||||||||            |
seq2  CCTGATAAACAACTTCAGTGAAGTAGCTGGATATAAATTTTTTTATTTTT  150

seq1  TAACTCAAACA------AGTCAATGGCCTTTCTCTACACAAAGAATAAA-  182
      |  ||  |  |        | | | |   || ||| || | | | |  | 
seq2  TTTCTTTATAATTTGGTTTTTATTAGATATTTTCTTCATATAAATTTCAA  200

seq1  --------------------------------------------------  182
                                                        
seq2  ATGCTATCCTGAAAGTCCCCTATATGCTTCCCCGCCCTGTTCCTCTACCC  250

seq1  --------------------------------------------------  182
                                                        
seq2  ATCCACTCCCACTTCTTGGTTCTGGCATCCCCCTATACTGGGCCATATAA  300

seq1  --------------------------------------------------  182
                                                        
seq2  AGTTTGCAAGACCAAGGGGCCTCTCTTCCCAATGATGGCTGACTAGGCCA  350

seq1  --------------------------------------------------  182
                                                        
seq2  TCTGCTACATATGCAGCTAGAGACACAAGCTCTGGGGGTACTGGTAGTTC  400

seq1  --------------------------------------------------  182
                                                        
seq2  ATATTGTAGTTCCAACTATAGGGTTGCAGACCCCTTCAGCTTCTTTAGCT  450

seq1  --------------------------------------------------  182
                                                        
seq2  CCTACATTGGGGGGCAGTGTGTTCCATCCAATAGATGACTGTGAGCAAGG  500

seq1  --------------------------------------------------  182
                                                        
seq2  TGGATATAAAAATTAACTCAAACAAATCAGTGGGCTTTTTTTCTACACAA  550

seq1  ---------  182
               
seq2  AGGGATAAA  559

seq1: chr9_108951546_108952691
seq2: B6Ng01-109P09.g_68_1192

seq1  GAATTCTCTTTCTAGAGGATTTATGTTATTTCCTGATGTTAGCCTAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTCTAGAGGATTTATGTTATTTCCTGATGTTAGCCTAAGCA  50

seq1  CAGAGACTCATGATTAGAAGGGAAGACTATTCTTTTCTCCCTTCTTCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTCATGATTAGAAGGGAAGACTATTCTTTTCTCCCTTCTTCGTG  100

seq1  ACAAATGTTTCAGGTCCTGTCCAAGTGTATAGAATCATCATGGCCCATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTTTCAGGTCCTGTCCAAGTGTATAGAATCATCATGGCCCATTT  150

seq1  TGTGGGCTTTACCACCGTGGCCCCCCAAAGCTTCTGGCAATGATGCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGCTTTACCACCGTGGCCCCCCAAAGCTTCTGGCAATGATGCCTGG  200

seq1  CTTCCTAGATATCCCTCCATTACATTAGGGAAGGCCACTAGGAGGACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGATATCCCTCCATTACATTAGGGAAGGCCACTAGGAGGACTTG  250

seq1  GGTGGCAGGCTTATCTCCACTGTCTCTTCCCTGCTCTCTGAAGACTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAGGCTTATCTCCACTGTCTCTTCCCTGCTCTCTGAAGACTTTGC  300

seq1  ATAAGATTTTTTTTTTTTTTTAAAGATAGGGTCTGGGTGGGGCTGGCGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTTTTTTTTTTTTTTAAAGATAGGGTCTGGGTGGGGCTGGCGAG  350

seq1  ATGGCTCAGTGTTTAAGGGCACTGTCTGATCTTTCAAAGGTCAGGAGTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGTGTTTAAGGGCACTGTCTGATCTTTCAAAGGTCAGGAGTAC  400

seq1  GATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATTGGATCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATTGGATCCAA  450

seq1  TGCCCTCTTCTGGTGTGTCAGCGACAGGATGTTCATATACGTTAAATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCTTCTGGTGTGTCAGCGACAGGATGTTCATATACGTTAAATAAA  500

seq1  TAAATCTTAAAAAAAAAAAAAAGATAGGGTCTGGGGTCGAACATGGTAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTTAAAAAAAAAAAAAAGATAGGGTCTGGGGTCGAACATGGTAGT  550

seq1  GCACATCTTTAATCCCAGCACACAGGAGGATGCAAAGACAGTTGGATCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATCTTTAATCCCAGCACACAGGAGGATGCAAAGACAGTTGGATCTC  600

seq1  GTGAATTCAAGGCAAGTTTCAGGATAGCCGGATCTACATAGCAGGGAGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCAAGGCAAGTTTCAGGATAGCCGGATCTACATAGCAGGGAGAC  650

seq1  CCCACCTCAGACAACAAAATAGGGTCTGGGATATTCCTCTCTTCAAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCAGACAACAAAATAGGGTCTGGGATATTCCTCTCTTCAAACCC  700

seq1  TTTTCACTCTTGGGAGTTCTACATTTTCATTTGCTCTGCTTTAAAGAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTCTTGGGAGTTCTACATTTTCATTTGCTCTGCTTTAAAGAAAG  750

seq1  G-AAATGGGGCTGGAGAGATGGCTCAGTAGTTAGCACTGACTCTTAAGTC  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGGGCTGGAGAGATGGCTCAGTAGTTAGCACTGACTCTTAAGTC  800

seq1  TGGAGAGGACTGAGTCTTCAGAGGACTGGAGTTCAGTTCCCAACACTCAC  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGAGAGGACTGAGTC-TCAGAGGACTGGAGTTCAGTTCCCAACACTCAC  849

seq1  CTGACAGCTCAACTGTCTGTAGTTCCAGTCCTATGGGGTCCAGTGCACCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAGCTCAACTGTCTGTAGTTCCAGTCCTATGGGGTCCAGTGCACCT  899

seq1  CCTGACTGCTGCAGGCACAACATGCACTCTCATGTAGTCCAGAATGGCAA  949
      ||||||||||||| |||| ||||||||||||||||||| ||||   ||||
seq2  CCTGACTGCTGCA-GCAC-ACATGCACTCTCATGTAGT-CAGA--TGCAA  944

seq1  AGTCATCCTCGGGCCCCAGTGCAGGCAGGCACCTATCTCCATACCTCCCA  999
      ||||||||||||| ||||||||| ||| ||| |||||| |||||||||||
seq2  AGTCATCCTCGGG-CCCAGTGCA-GCA-GCA-CTATCT-CATACCTCCCA  989

seq1  CCTGCTCGAAACTTTAGTTGCTCAGTTACATCTGGTCCCTGCTAACCA-T  1048
       |||||||||||  ||||  ||||| |||||||||| ||||||||| | |
seq2  -CTGCTCGAAAC--TAGTGCCTCAG-TACATCTGGT-CCTGCTAACAATT  1034

seq1  CTCTGACCGCCAGCCTGTAGGAGCGGCCTGTGTGGCCACTCCTTTGTGAG  1098
      |||||||||||||||||||||||||| |||||| ||| |||||   ||  
seq2  CTCTGACCGCCAGCCTGTAGGAGCGG-CTGTGT-GCCCCTCCT---TGGA  1079

seq1  ATCGCACATGGCTGGTCACCTTTTCTCCATCAGAAGC-ATGGTGAACTT  1146
      |||||  |||||| ||||||||||| ||||| ||||| ||||| |||||
seq2  ATCGCCAATGGCT-GTCACCTTTTC-CCATC-GAAGCAATGGTAAACTT  1125