BAC Information

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BAC

Clone NameB6Ng01-109P18
Chromosome3 (Build37)
Map Location 88,277,038 - 88,419,821
singlet/doubletdoublet
Overlap geneLOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2
Upstream geneEtv3, EG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a
Downstream geneArhgef2, Rxfp4, 2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109P18.bB6Ng01-109P18.g
ACCDH916739DH916740
length1,039762
definitionDH916739|Mus musculus domesticus DNA, BAC clone: B6Ng01-109P18, 5' end.DH916740|Mus musculus domesticus DNA, BAC clone: B6Ng01-109P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,418,790 - 88,419,821)(88,277,038 - 88,277,797)
sequence
gaattccacagccctcaaatagctctccttagactcattttccatcagcc
ggttatctgccatccaaagcccacccgtggcacccctgtccatccaacag
cagaatggccagctcccccatatgtctctgacaacagcaagcaaatctct
ctctgctatccggcagattctgtagggtttggctactccttttctgcccc
atctcttcaggctactgcacaacaaggcggcaactcaggaaaatggcctc
tcctcagaagcatgggggggggggaaccacagtgtttgaagaagcaggga
gtcatcgggctacaaagcccacacccatcactcctccatccaggcctgtt
gtgggctttcaggatcccccaaactcaccatttgctgaggtctgtgacat
aggactgaggtgagttacctgcaaggcatacaaggaaaagagaggagtct
agtaaaaagccagacaaaggcacctaaggccgccttcccagccccctcca
cctggatcaggttcccaggctgcaggtgcatgtgacgccattcctgaggg
cagccactggggagcaaggacagagggcggggtctggggagagcacagct
gaacaacttgtgagcaagctaaagtgaagagctagctgggaccaatcatg
gttccttcctgttctggtaaacagagagggccgaggctcagcactgagct
acctatactccatcttctaatctttattcagttatttgtttgtgtgcaca
tcagaggaagggcaggcatgtggcgatcagggaagagcctctccttccac
cctgtgggtacccgagattgaactcaggttgtcagacttgtggcaccttt
acccaataagcccagagagccatctttgcccgtccctgcttaggtcatct
tcaggacaaagatgtgccttaagtaaccatcctcccatctctagtgatgg
aagaagcctggaaagaccccttctatccggtgtcctccgccactggcagg
acagtctcagagatgctggtgtccttgaataagaatcct
gaattccctcggggcaaagagctggctgctgacagctgtcaaaacagcag
ctgacttaaaggaaacaaaagacccagccgcacaaacccctgctgaacag
aattggcagtcagagcctaaggcactgaaacaagcctgcgcagacccaca
gcaactgcgcacagcaggaaacttttaagattgagggctcttcactggtt
ggtcctaagtctcaccttatttgcataccccattcagccaatgagaacca
ggtggtttctcagtaaattcagacataccttaggcttcatgacactttct
cgtctgagctttataatgaaaggcacaggtgattttagcgctcagccctc
acacatacccttgcttcaagactcaccaaaggcagaccaacttccaggac
tcaacctttaacagctgccgcaggcaggataactcattccattccttcct
cagccaccagagacctaagattccagccttcaagatccatcagagacaaa
gaaatctgtttctgttgcttccctcagtctgtaaacatggtctgagagga
actgtctcagctggtaccccaaagccctcagagaagttctcaactatagc
aatccctcacttggcacgtgccaccacctcttgcctggcacaccagaagt
ctgctgattcaagatgctggcaaacccccagcctccttcagctggatctc
agttctcattttcctattgattttactcctgttgattttggggtagtggt
gggtgggtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88418790_88419821
seq2: B6Ng01-109P18.b_49_1087 (reverse)

seq1  AGGA-TCTTATTC-AGGACACCAGCATCTCTGAGACTGTCCTGCCAGTGG  48
      |||| |||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGATTCTTATTCAAGGACACCAGCATCTCTGAGACTGTCCTGCCAGTGG  50

seq1  CGGAGGACA-CGGATAGAAGGGGTCTTTCCAGGCTTC-TCCATCACTAGA  96
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  CGGAGGACACCGGATAGAAGGGGTCTTTCCAGGCTTCTTCCATCACTAGA  100

seq1  GAT-GGAGGATGGTTACTTAAGGCACATCTTTGTCCTGAAGATGACCTAA  145
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGAGGATGGTTACTTAAGGCACATCTTTGTCCTGAAGATGACCTAA  150

seq1  GCAGGGACGGGC-AAGATGGCTCTCTGGGCTTATTGGGTAAAGGTGCCAC  194
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAGGGACGGGCAAAGATGGCTCTCTGGGCTTATTGGGTAAAGGTGCCAC  200

seq1  AAGTCTGACAACCTGAGTTCAATCTCGGGTACCCACAGGGTGGAAGGAGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTGACAACCTGAGTTCAATCTCGGGTACCCACAGGGTGGAAGGAGA  250

seq1  GGCTCTT-CCTGATCGCCACATGCCTGCCCTTCCTCTGATGTGCACACAA  293
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTCCCTGATCGCCACATGCCTGCCCTTCCTCTGATGTGCACACAA  300

seq1  ACAAATAACTGAATAAAGATTAGAAGATGGAGTATAGGTAGCTCAGTGCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAACTGAATAAAGATTAGAAGATGGAGTATAGGTAGCTCAGTGCT  350

seq1  GAGCCTCGGCCCTCTCTGTTTACCAGAACAGGAAGGAACCATGATTGGTC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCGGCCCTCTCTGTTTACCAGAACAGGAAGGAACCATGATTGGTC  400

seq1  CCAGCTAGCTCTTCACTTTAGCTTGCTCACAAGTTGTTCAGCTGTGCTCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGCTCTTCACTTTAGCTTGCTCACAAGTTGTTCAGCTGTGCTCT  450

seq1  CCCCAGACCCCGCCCTCTGTCCTTGCTCCCCAGTGGCTGCCCTCAGGAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGACCCCGCCCTCTGTCCTTGCTCCCCAGTGGCTGCCCTCAGGAAT  500

seq1  GGCGTCACATGCACCTGCAGCCTGGGAACCTGATCCAGGTGGAGGGGGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTCACATGCACCTGCAGCCTGGGAACCTGATCCAGGTGGAGGGGGCT  550

seq1  GGGAAGGCGGCCTTAGGTGCCTTTGTCTGGCTTTTTACTAGACTCCTCTC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGCGGCCTTAGGTGCCTTTGTCTGGCTTTTTACTAGACTCCTCTC  600

seq1  TTTTCCTTGTATGCCTTGCAGGTAACTCACCTCAGTCCTATGTCACAGAC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCTTGTATGCCTTGCAGGTAACTCACCTCAGTCCTATGTCACAGAC  650

seq1  CTCAGCAAATGGTGAGTTTGGGGGATCCTGAAAGCCCACAACAGGCCTGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCAAATGGTGAGTTTGGGGGATCCTGAAAGCCCACAACAGGCCTGG  700

seq1  ATGGAGGAGTGATGGGTGTGGGCTTTGTAGCCCGATGACTCCCTGCTTCT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGGAGTGATGGGTGTGGGCTTTGTAGCCCGATGACTCCCTGCTTCT  750

seq1  TCAAACACTGTGGTTCCCCCCCCCCCATGCTTCTGAGGAGAGGCCATTTT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACACTGTGGTTCCCCCCCCCCCATGCTTCTGAGGAGAGGCCATTTT  800

seq1  CCTGAGTTGCCGCCTTGTTGTGCAGTAGCCTGAAGAGATGGGGCAGAAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTGCCGCCTTGTTGTGCAGTAGCCTGAAGAGATGGGGCAGAAAA  850

seq1  GGAGTAGCCAAACCCTACAGAATCTGCCGGATAGCAGAGAGAGATTTGCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTAGCCAAACCCTACAGAATCTGCCGGATAGCAGAGAGAGATTTGCT  900

seq1  TGCTGTTGTCAGAGACATATGGGGGAGCTGGCCATTCTGCTGTTGGATGG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTGTCAGAGACATATGGGGGAGCTGGCCATTCTGCTGTTGGATGG  950

seq1  ACAGGGGTGCCACGGGTGGGCTTTGGATGGCAGATAACCGGCTGATGGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGGTGCCACGGGTGGGCTTTGGATGGCAGATAACCGGCTGATGGAA  1000

seq1  AATGAGTCTAAGGAGAGCTATTTGAGGGCTGTGGAATTC  1032
      |||||||||||||||||||||||||||||||||||||||
seq2  AATGAGTCTAAGGAGAGCTATTTGAGGGCTGTGGAATTC  1039

seq1: chr3_88277038_88277797
seq2: B6Ng01-109P18.g_67_828

seq1  GAATTCCCTCGGGGCAAAGAGCTGGCTGCTGACAGCTGTCAAAACAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTCGGGGCAAAGAGCTGGCTGCTGACAGCTGTCAAAACAGCAG  50

seq1  CTGACTTAAAGGAAACAAAAGACCCAGCCGCACAAACCCCTGCTGAACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTAAAGGAAACAAAAGACCCAGCCGCACAAACCCCTGCTGAACAG  100

seq1  AATTGGCAGTCAGAGCCTAAGGCACTGAAACAAGCCTGCGCAGACCCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCAGTCAGAGCCTAAGGCACTGAAACAAGCCTGCGCAGACCCACA  150

seq1  GCAACTGCGCACAGCAGGAAACTTTTAAGATTGAGGGCTCTTCACTGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGCGCACAGCAGGAAACTTTTAAGATTGAGGGCTCTTCACTGGTT  200

seq1  GGTCCTAAGTCTCACCTTATTTGCATACCCCATTCAGCCAATGAGAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTAAGTCTCACCTTATTTGCATACCCCATTCAGCCAATGAGAACCA  250

seq1  GGTGGTTTCTCAGTAAATTCAGACATACCTTAGGCTTCATGACACTTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTTTCTCAGTAAATTCAGACATACCTTAGGCTTCATGACACTTTCT  300

seq1  CGTCTGAGCTTTATAATGAAAGGCACAGGTGATTTTAGCGCTCAGCCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGAGCTTTATAATGAAAGGCACAGGTGATTTTAGCGCTCAGCCCTC  350

seq1  ACACATACCCTTGCTTCAAGACTCACCAAAGGCAGACCAACTTCCAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACCCTTGCTTCAAGACTCACCAAAGGCAGACCAACTTCCAGGAC  400

seq1  TCAACCTTTAACAGCTGCCGCAGGCAGGATAACTCATTCCATTCCTTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCTTTAACAGCTGCCGCAGGCAGGATAACTCATTCCATTCCTTCCT  450

seq1  CAGCCACCAGAGACCTAAGATTCCAGCCTTCAAGATCCATCAGAGACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCACCAGAGACCTAAGATTCCAGCCTTCAAGATCCATCAGAGACAAA  500

seq1  GAAATCTGTTTCTGTTGCTTCCCTCAGTCTGTAAACATGGTCTGAGAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGTTTCTGTTGCTTCCCTCAGTCTGTAAACATGGTCTGAGAGGA  550

seq1  ACTGTCTCAGCTGGTACCCCAAAGCCCTCAGAGAAGTTCTCAACTATAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTCAGCTGGTACCCCAAAGCCCTCAGAGAAGTTCTCAACTATAGC  600

seq1  AATCCCTCACTTGGCACGTGCCACCACCTCTTGCCTGGCACACCAGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTCACTTGGCACGTGCCACCACCTCTTGCCTGGCACACCAGAAGT  650

seq1  CTGCTGATTCAAGATGCTGGCAAACCCCCAGCCTCCTTCAGCTGGATCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGATTCAAGATGCTGGCAAACCCCCAGCCTCCTTCAGCTGGATCTC  700

seq1  AGTTCTCATTTTCCTATTGATTTTACTCCTGTTGATTTTGGGGTAGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCATTTTCCTATTGATTTTACTCCTGTTGATTTTGGGGTAGTGGT  750

seq1  GG--TGGTGGTG  760
      ||   |||||||
seq2  GGGTGGGTGGTG  762