BAC Information

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BAC

Clone NameB6Ng01-110A06
Chromosome3 (Build37)
Map Location 27,994,955 - 27,996,120
singlet/doubletsinglet
Overlap genePld1
Upstream geneEct2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b, E030011K20Rik
Downstream geneTnik, Slc2a2, EG624446, Eif5a2, Rpl22l1, Gm1527, 6130401L20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110A06.bB6Ng01-110A06.g
ACCDH916763DH916764
length1,144639
definitionDH916763|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A06, 5' end.DH916764|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaggaaacgaagtcgagcccagagcccatggagaaacgccgctta
ctggcttacttcccatggctggctcagcgtgcgttcttacaccactcagg
accacccacccagggtgcaatgcggcaatgctcctaatgggcggggccat
cccatgggcggggcggggccctcccatatcaatcatgaatcaagaaaatg
tcccatggattgattcactagctgatggccaatctaatggagacagttct
caatctaggctcctctttccagataactttagtttgtgtcacgttgtcaa
aacactaatcagaataccaagtattatataagactgtaggggccccagtt
caggattctgtactaataagcatgaattgagttatgatgggttccagaga
agtactaattgaggtgatctcccagcatgactgaattcactttgtatgac
ctaactcaagactctaatggagccttacaaacccttgcactaacatatac
cagcttaagtataccctatactcttcagtataaccctagagcttgggtgt
gagagtcttcattggctatggttagggtatctatgatgaggcatgtgctg
tttcaggagagtgcacctttgcacacatgcacagtaagataatcatgcag
tggaccaggcacccctgctgtgggatcttggagtgggagaaggcagggga
atggcatgggaatgggaaatgtgaggatgttagagctgagggatgctact
catggtcaagtgttttcagactccagactgttcagagtccatgagaaaat
ctgagaacatcaagtttagtgtgggaactctaactgaacttcaaagtaga
tacggaaatagtaaaaagcccttggaacatggaaaaattcccaataatgg
gagacacgcaaccaaacccaaagctccctcctttatctggtttcttttca
cactgaataaaatagagtgtttagccaaagtaattgtggaaaacatttga
gcccgttttcctcccttgagccctgctcttcttcctccttagagtgcagt
gataaagcccatcagcaacaatctgcctttcttattccaaacctggagaa
aagacaaagctcattaaaacagtacagctgctgtgcatcctctc
gaattctctgttagatctatactccatttttttaaattgcttatttgttt
tcttgatctagttttttgagttctttatatgctttggatattagccttct
atcggatgtgtagttggtaaaaaatcttttccattctataggctgccgct
ttttcctaaggatggtgccctttgctgggcagaagcttttcagtttcatg
aggtcctatttactaattgttgatcttaatgcctgtgctattggtgttct
gttcagaaagtcttttcatgtgccaatgagttcaaggcatttgatctgtt
tgcattcttctactgacggccattgaatttgatcagtactatttgttgaa
gaacctgtatttttttttccactttgatttcattaaccaacatggctact
tcatgccaataccaagctgtgtttatttctataaatctaaaatataactt
gaggtcagggatggtggtacccccagcaatactattatttaggactggtt
ttggtatactgaagctttaaggaatgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgcgcgtgcctctaaaagaaattgaaaatttttttttttaat
atctgttaggaattatgttaaaatttttattgagattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_27994955_27996120
seq2: B6Ng01-110A06.b_47_1190

seq1  GAATTCAGGAAACGAAGTCGAGCCCAGAGCCCATGGAGAAACGCCGCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAACGAAGTCGAGCCCAGAGCCCATGGAGAAACGCCGCTTA  50

seq1  CTGGCTTACTTCCCATGGCTGGCTCAGCGTGCGTTCTTACACCACTCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTACTTCCCATGGCTGGCTCAGCGTGCGTTCTTACACCACTCAGG  100

seq1  ACCACCCACCCAGGGTGCAATGCGGCAATGCTCCTAATGGGCGGGGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCACCCAGGGTGCAATGCGGCAATGCTCCTAATGGGCGGGGCCAT  150

seq1  CCCATGGGCGGGGCGGGGCCCTCCCATATCAATCATGAATCAAGAAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGGCGGGGCGGGGCCCTCCCATATCAATCATGAATCAAGAAAATG  200

seq1  TCCCATGGATTGATTCACTAGCTGATGGCCAATCTAATGGAGACAGTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGGATTGATTCACTAGCTGATGGCCAATCTAATGGAGACAGTTCT  250

seq1  CAATCTAGGCTCCTCTTTCCAGATAACTTTAGTTTGTGTCACGTTGTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTAGGCTCCTCTTTCCAGATAACTTTAGTTTGTGTCACGTTGTCAA  300

seq1  AACACTAATCAGAATACCAAGTATTATATAAGACTGTAGGGGCCCCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTAATCAGAATACCAAGTATTATATAAGACTGTAGGGGCCCCAGTT  350

seq1  CAGGATTCTGTACTAATAAGCATGAATTGAGTTATGATGGGTTCCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTCTGTACTAATAAGCATGAATTGAGTTATGATGGGTTCCAGAGA  400

seq1  AGTACTAATTGAGGTGATCTCCCAGCATGACTGAATTCACTTTGTATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTAATTGAGGTGATCTCCCAGCATGACTGAATTCACTTTGTATGAC  450

seq1  CTAACTCAAGACTCTAATGGAGCCTTACAAACCCTTGCACTAACATATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCAAGACTCTAATGGAGCCTTACAAACCCTTGCACTAACATATAC  500

seq1  CAGCTTAAGTATACCCTATACTCTTCAGTATAACCCTAGAGCTTGGGTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAAGTATACCCTATACTCTTCAGTATAACCCTAGAGCTTGGGTGT  550

seq1  GAGAGTCTTCATTGGCTATGGTTAGGGTATCTATGATGAGGCATGTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCTTCATTGGCTATGGTTAGGGTATCTATGATGAGGCATGTGCTG  600

seq1  TTTCAGGAGAGTGCACCTTTGCACACATGCACAGTAAGATAATCATGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGAGAGTGCACCTTTGCACACATGCACAGTAAGATAATCATGCAG  650

seq1  TGGACCAGGCACCCCTGCTGTGGGATCTTGGAGTGGGAGAAGGCAGGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAGGCACCCCTGCTGTGGGATCTTGGAGTGGGAGAAGGCAGGGGA  700

seq1  ATGGCATGGGAATGGGAAATGTGAGGATGTTAGAGCTGAGGGATGCTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGGGAATGGGAAATGTGAGGATGTTAGAGCTGAGGGATGCTACT  750

seq1  CATGGTCAAGTGTTTTCAGACTCCAGACTGTTCAGAGTCCATGAGAAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCAAGTGTTTTCAGACTCCAGACTGTTCAGAGTCCATGAGAAAAT  800

seq1  CTGAGAACATCAAGTTTAGTGTGGGAACTCTAACTGAACTTCAAAGTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAACATCAAGTTTAGTGTGGGAACTCTAACTGAACTTCAAAGTAGA  850

seq1  TACGGAAATAGTAAAAAGCCCTTGGAACATGGAAAAATTCCCAATAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGAAATAGTAAAAAGCCCTTGGAACATGGAAAAATTCCCAATAATGG  900

seq1  GAGACACGCAAACCAAACCCAAAGCTCCCTCCTTTATCCTGGTTTTCTTT  950
      ||||||||| ||||||||||||||||||||||||||| |||||||   ||
seq2  GAGACACGC-AACCAAACCCAAAGCTCCCTCCTTTAT-CTGGTTT--CTT  946

seq1  TTCACACTGAATAAAAATAGAGTGTTTAGCCAAAAGTTAATTGTTGGAAA  1000
      |||||||||||| |||||||||||||||||||||   |||||||  | ||
seq2  TTCACACTGAAT-AAAATAGAGTGTTTAGCCAAA--GTAATTGT--GGAA  991

seq1  AACATTTGAGCCCCGTTTTCCCTCCCCTGGAGCCCTGCTCTTCTTCCCTC  1050
      |||||||||| ||||||||||   |||| ||||||||||||||||||   
seq2  AACATTTGAG-CCCGTTTTCC--TCCCTTGAGCCCTGCTCTTCTTCC--T  1036

seq1  CCTTAGAGTGGCAGTTGATTAAGGCCCATCAGCAAACAATCCTGCTTTTC  1100
      ||||||||| |||| ||| ||| |||||||||| |||||| |||| ||||
seq2  CCTTAGAGT-GCAG-TGA-TAAAGCCCATCAGC-AACAAT-CTGCCTTTC  1081

seq1  TTATTTCTCAGACCTGGAG-AAAGACAAAGCTCATTAAAAACAGTACAGG  1149
      |||||   || |||||||| |||||||||||||||| ||||||||||| |
seq2  TTATT--CCAAACCTGGAGAAAAGACAAAGCTCATT-AAAACAGTACA-G  1127

seq1  CTGCTGTGCATCCTCTC  1166
      |||||||||||||||||
seq2  CTGCTGTGCATCCTCTC  1144