BAC Information

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BAC

Clone NameB6Ng01-110A09
Chromosome3 (Build37)
Map Location 87,354,691 - 87,548,395
singlet/doubletdoublet
Overlap geneEG546801, Arhgef11, EG625281
Upstream geneLrba, EG667024, LOC100042319, Dclk2, EG625055, Cd1d2, Cd1d1, LOC667897, Kirrel1, LOC100042355, Msr2, Cd5l, Fcrl1, Fcrl5, Etv3
Downstream gene3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip, Ubqln4, LOC545536, Ssr2, Arhgef2, Rxfp4, 2810403A07Rik, Rit1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110A09.bB6Ng01-110A09.g
ACCDH916767DH916768
length1,155657
definitionDH916767|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A09, 5' end.DH916768|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,547,233 - 87,548,395)(87,354,691 - 87,355,345)
sequence
gaattcattatgtaagaacgagccccagcagtagaagatgacttgaattg
tttatacgaaacaaggcagcccaaaagactgagcaatagttatacagcac
tggaaatgtttgaatagagaaatttctgccccttggttccattttcttag
gactggagagacgttattgcctgatagagggccctgtggtgacttttttt
ttttccttggtgctgtgtaacaaagtatgtagtagcttaaaacaaccagg
agagtggagcatgacaacacacacgtgagcctaaacatgtagtgcagaaa
aggctgaggcaggaagtgttgaggctggcgtaagatcctgtcttgaaacc
aaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaaccaacca
tcatcatcccctcgagagttcccctgagatcctctgaaacagagtagctg
gttgcctctgactcaggcttgaggctgcaggaaagctctgcttgggactg
ttgccctttcaggggaagctgaggcagggactctgcttctcagctggctt
acgtggtgccagtgggcctttccattacctagctgaatgtctgagagcac
ccaggatggaaaccagttctcataactcagaaatgacagcctatcatttt
gccatattctgttcactgagagtgtcactagtgcatacacatgcacgact
ttaaatccccagactgagaggccgaggcaagcagatttctgggtttgagg
tcagcctggtctaggacagctagggctacacagagaaaaaccaaaccaaa
ataccaccaccccttcccccctgccccctacacagacaaatgtcactagt
tctagctatcacaatagacaggattacccagcatggcctggtacctagaa
gtatggcccagtcaagccgtcttagaaaccactatactgcagtccggctt
ctggaactttagcctgggaattgtcctagaatgtatttcttctatggggg
ctatcctaagctcagaatgctccccgaatgtcatcctcagtctattcctc
ctactgtggtgcctcagtgggtgtttccaggattcgatccctctcccttc
tcaggaggtatcctcttggagggaaaccaataccaaaacagatcctttaa
taagc
gaattcctcctgagcctggcaggatgaactaaagggatgcatgcctctgg
tggggcaagagggttctgctccatccacctgcccctcttcctttctcaca
ccgtttcccaaagtactagggccaagaatcctgacgtatgagagccctta
tggtagtgagcacagatgcaggctagagaggcaggtgcgatgccaagaga
aagtttcaaactctctccaagccctgggtcagggtcggggtggagggggt
ttgatctctctggctttgtcaaaggacagtggagcctcctgggcatagag
actcaagcacagaatcagctgagagagcttcagacttgatagaaagtgaa
gggctcaggtctagcctggaggtctgggctagatgtagacacgggattgg
tttttatggacggaggccttggatgctgggatgcagggttgcgggctacc
tctgcttgctgccgggtttttccggctgatctaacgccctgccctgggca
gtgatgagctcacccagctcaactgtttgctggaactttcatctcctgcc
tgccttgccctgctgcccccttagtgcctgctgcacgggatttcttgttc
ctggtgggggagactaagggccggggtgggatgttcgggaggcttcccta
aggaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_87547233_87548395
seq2: B6Ng01-110A09.b_49_1203 (reverse)

seq1  GCTTACTAAAGGA-CTGCTCTGGTATTGGGTTCCCCTCCAGA-GATACCT  48
      ||||| ||||||| ||| | ||||||||| |||||  | ||| |||||| 
seq2  GCTTATTAAAGGATCTGTTTTGGTATTGGTTTCCCTCCAAGAGGATACC-  49

seq1  TCCTGAG-AGGGAGAGGGATCTGAGATCCTGGAAACA-CCACTGAGGCCA  96
      ||||||| ||||||||||||| || |||||||||||| ||||||||||  
seq2  TCCTGAGAAGGGAGAGGGATC-GA-ATCCTGGAAACACCCACTGAGGCAC  97

seq1  CACAAGTAGGAGGGAAATAGACTGAAGGATGGACATTCGGGGAGCA-TCT  145
      ||| |||||||||  ||||||||| ||||| ||||||||||||||| |||
seq2  CAC-AGTAGGAGG--AATAGACTG-AGGAT-GACATTCGGGGAGCATTCT  142

seq1  GAGCCTAAGGATAGCCCCCAATAGAAGAAATACA-TCTAGGACAATTCCC  194
      ||| || |||||||||||| |||||||||||||| |||||||||||| ||
seq2  GAG-CTTAGGATAGCCCCC-ATAGAAGAAATACATTCTAGGACAATT-CC  189

seq1  CAGGCTAAAGTTCCAGAAGCCGGACCTGCAGTATAGTGGTTTCTAAGACG  244
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGGCTAAAGTTCCAGAAGCCGGA-CTGCAGTATAGTGGTTTCTAAGACG  238

seq1  GCCTTGACTGGGCCCTACTTCTAGGTACCCAGGCCATGCTGGGTAATCCT  294
      | |||||||||||| |||||||||||| ||||||||||||||||||||||
seq2  G-CTTGACTGGGCCATACTTCTAGGTA-CCAGGCCATGCTGGGTAATCCT  286

seq1  GTCTATTGTGATAGCTAGAACTAGTGACATTTGTCTGTGTAGGGGGCAGG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTGTGATAGCTAGAACTAGTGACATTTGTCTGTGTAGGGGGCAGG  336

seq1  GGGGAAGGGGTGGTGGTATTTTGGTTTGGTTTTTCTCTGTGTAGCCCTAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGGGGTGGTGGTATTTTGGTTTGGTTTTTCTCTGTGTAGCCCTAG  386

seq1  CTGTCCTAGACCAGGCTGACCTCAAACCCAGAAATCTGCTTGCCTCGGCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTAGACCAGGCTGACCTCAAACCCAGAAATCTGCTTGCCTCGGCC  436

seq1  TCTCAGTCTGGGGATTTAAAGTCGTGCATGTGTATGCACTAGTGACACTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTCTGGGGATTTAAAGTCGTGCATGTGTATGCACTAGTGACACTC  486

seq1  TCAGTGAACAGAATATGGCAAAATGATAGGCTGTCATTTCTGAGTTATGA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGAACAGAATATGGCAAAATGATAGGCTGTCATTTCTGAGTTATGA  536

seq1  GAACTGGTTTCCATCCTGGGTGCTCTCAGACATTCAGCTAGGTAATGGAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGGTTTCCATCCTGGGTGCTCTCAGACATTCAGCTAGGTAATGGAA  586

seq1  AGGCCCACTGGCACCACGTAAGCCAGCTGAGAAGCAGAGTCCCTGCCTCA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCACTGGCACCACGTAAGCCAGCTGAGAAGCAGAGTCCCTGCCTCA  636

seq1  GCTTCCCCTGAAAGGGCAACAGTCCCAAGCAGAGCTTTCCTGCAGCCTCA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCCCTGAAAGGGCAACAGTCCCAAGCAGAGCTTTCCTGCAGCCTCA  686

seq1  AGCCTGAGTCAGAGGCAACCAGCTACTCTGTTTCAGAGGATCTCAGGGGA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGTCAGAGGCAACCAGCTACTCTGTTTCAGAGGATCTCAGGGGA  736

seq1  ACTCTCGAGGGGATGATGATGGTTGGTTGGTTGGTTGGTTGGTTGGTTGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCGAGGGGATGATGATGGTTGGTTGGTTGGTTGGTTGGTTGGTTGG  786

seq1  TTGGTTGGTTGGTTGGTTTGGTTTCAAGACAGGATCTTACGCCAGCCTCA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGGTTGGTTGGTTTGGTTTCAAGACAGGATCTTACGCCAGCCTCA  836

seq1  ACACTTCCTGCCTCAGCCTTTTCTGCACTACATGTTTAGGCTCACGTGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCCTGCCTCAGCCTTTTCTGCACTACATGTTTAGGCTCACGTGTG  886

seq1  TGTTGTCATGCTCCACTCTCCTGGTTGTTTTAAGCTACTACATACTTTGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTCATGCTCCACTCTCCTGGTTGTTTTAAGCTACTACATACTTTGT  936

seq1  TACACAGCACCAAGGAAAAAAAAAAAGTCACCACAGGGCCCTCTATCAGG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCACCAAGGAAAAAAAAAAAGTCACCACAGGGCCCTCTATCAGG  986

seq1  CAATAACGTCTCTCCAGTCCTAAGAAAATGGAACCAAGGGGCAGAAATTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAACGTCTCTCCAGTCCTAAGAAAATGGAACCAAGGGGCAGAAATTT  1036

seq1  CTCTATTCAAACATTTCCAGTGCTGTATAACTATTGCTCAGTCTTTTGGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTCAAACATTTCCAGTGCTGTATAACTATTGCTCAGTCTTTTGGG  1086

seq1  CTGCCTTGTTTCGTATAAACAATTCAAGTCATCTTCTACTGCTGGGGCTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGTTTCGTATAAACAATTCAAGTCATCTTCTACTGCTGGGGCTC  1136

seq1  GTTCTTACATAATGAATTC  1163
      |||||||||||||||||||
seq2  GTTCTTACATAATGAATTC  1155

seq1: chr3_87354691_87355345
seq2: B6Ng01-110A09.g_69_725

seq1  GAATTCCTCCTGAGCCTGGCAGGATGAACTAAAGGGATGCATGCCTCTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTGAGCCTGGCAGGATGAACTAAAGGGATGCATGCCTCTGG  50

seq1  TGGGGCAAGAGGGTTCTGCTCCATCCACCTGCCCCTCTTCCTTTCTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAAGAGGGTTCTGCTCCATCCACCTGCCCCTCTTCCTTTCTCACA  100

seq1  CCGTTTCCCAAAGTACTAGGGCCAAGAATCCTGACGTATGAGAGCCCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTTCCCAAAGTACTAGGGCCAAGAATCCTGACGTATGAGAGCCCTTA  150

seq1  TGGTAGTGAGCACAGATGCAGGCTAGAGAGGCAGGTGCGATGCCAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGTGAGCACAGATGCAGGCTAGAGAGGCAGGTGCGATGCCAAGAGA  200

seq1  AAGTTTCAAACTCTCTCCAAGCCCTGGGTCAGGGTCGGGGTGGAGGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTCAAACTCTCTCCAAGCCCTGGGTCAGGGTCGGGGTGGAGGGGGT  250

seq1  TTGATCTCTCTGGCTTTGTCAAAGGACAGTGGAGCCTCCTGGGCATAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCTCTGGCTTTGTCAAAGGACAGTGGAGCCTCCTGGGCATAGAG  300

seq1  ACTCAAGCACAGAATCAGCTGAGAGAGCTTCAGACTTGATAGAAAGTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAGCACAGAATCAGCTGAGAGAGCTTCAGACTTGATAGAAAGTGAA  350

seq1  GGGCTCAGGTCTAGCCTGGAGGTCTGGGCTAGATGTAGACACGGGATTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCAGGTCTAGCCTGGAGGTCTGGGCTAGATGTAGACACGGGATTGG  400

seq1  TTTTTATGGACGGAGGCCTTGGATGCTGGGATGCAGGGTTGCGGGCTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGGACGGAGGCCTTGGATGCTGGGATGCAGGGTTGCGGGCTACC  450

seq1  TCTGCTTGCTGCCGGG-TTTTCCGGCTGATCTAACGCCCTGCCCTGGGCA  499
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTGCTTGCTGCCGGGTTTTTCCGGCTGATCTAACGCCCTGCCCTGGGCA  500

seq1  GTGATGAGCTCACCCAGCTCAACTGTTTGCTGGAACTTTCATCTCCTGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGCTCACCCAGCTCAACTGTTTGCTGGAACTTTCATCTCCTGCC  550

seq1  TGCCTTGCCCTGCTGCCCCCTTAGTGCCTGCTGCACGGGATTTCTTGTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTGCCCTGCTGCCCCCTTAGTGCCTGCTGCACGGGATTTCTTGTTC  600

seq1  CTGGT-GGGGAGACTAAGGGCCGGGGTGGGATGTTCGGGAGGCTTCCCTA  648
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGGGGAGACTAAGGGCCGGGGTGGGATGTTCGGGAGGCTTCCCTA  650

seq1  AGGAACA  655
      |||||||
seq2  AGGAACA  657