BAC Information

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BAC

Clone NameB6Ng01-110A14
Chromosome3 (Build37)
Map Location 135,560,555 - 135,561,663
singlet/doubletsinglet
Overlap genenone
Upstream geneTacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2, Ube2d3, Manba, LOC668745, Nfkb1, ENSMUSG00000045520, Slc39a8
Downstream geneLOC100039350, LOC383923, Bank1, LOC100039477, LOC668868, Ppp3ca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110A14.b
ACCDH916775
length1,060
definitionDH916775|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A14, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattagtaaagtggataacccagaaaactggaggaattgccagaa
cacacacacacacacacacacacacacacacacacacacacacacacagt
aagagaatggcagggacttaaacagaagtcaatgtaatgactctctattt
ggattcccacatttcttgtgcttcctctgggatcggtcttgttttctctc
gtttctctctgttcctgaggtgcagctctgctccatgcctctttggaaag
ttccacagacgtggtcaggaaacgatggtcagcacagcccacaggacttt
cctagcttgagaagtggaagctgcagaaccaactctcctgagccattgca
catggaagcaaccgaattgtcacaggaagtgtgaagcagttgcaggaagg
gcaggggtcaagatgaacaggaaaaaaaaaaaaaaatcaacagaaatcca
tgactccaactgtgctgatcaatgatcttgatggagtctgctttcttctc
agtttcagggcaactcattgtccaccttaagaaacgtcatcagtactact
cactagtccaaaatactttgaacatcttttcgtcttaaatgatcgtggga
tcattaggcctaagacttatctaaacacagaaagaatggagaaaagacac
tgggctggtttgaatgataaacgccctcatagtctcctgtgattggttgt
gctatttaaggcagttcaggaggtgtggccatgctgaagggactactcac
tatgaacagactctggggacttaaatagctcttacattttctactttgtg
cttgctgttgccttcgacttcctgttcctgttgaaattcccactccttgt
tgccattcctccactacaccttcatggattctggtcccttggaaccttaa
gtgcaaatcaataaggcactttctcaagtgctcttttcttttctttttct
tctctcttcttcttcttgtagttttatttggacatattcttatttaattc
aatgttttccttacaggctccctcgaaccctatccatccctcctgcctat
gagggtgctc
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_135560555_135561663
seq2: B6Ng01-110A14.b_48_1107 (reverse)

seq1  GAGCACCCTCATAGAGGCAGGGGGAGGGGATGGGATAGGGGGTTTCTGAA  50
      ||||||||||||  |||||||     ||||| ||||||||   ||| || 
seq2  GAGCACCCTCAT--AGGCAGG----AGGGAT-GGATAGGG---TTC-GA-  38

seq1  GGGGAGACCTGGAAAGGGGAAAAACATTTGAAATATAAATAAAGAATATG  100
       ||||| |||| ||    | |||||| |||||   ||||| |||||||||
seq2  -GGGAG-CCTGTAA----GGAAAACA-TTGAA--TTAAAT-AAGAATATG  78

seq1  TCCAAAAAAAAAAAAAAAAAAAAAAAAGAAAGAAAGAAAGGAAGGAAGAA  150
      |||||| ||||  | || || ||                 ||||  ||| 
seq2  TCCAAATAAAACTACAAGAAGAA-----------------GAAG--AGAG  109

seq1  AGAAAAAAGAAAAGAAAAAAGAAGGCAACTTGGAGAAAAGTGCCTTTATT  200
      |  ||||||||||||||| ||      |||| ||| |||||||| |||||
seq2  AAGAAAAAGAAAAGAAAAGAG-----CACTT-GAG-AAAGTGCC-TTATT  151

seq1  GATTTGCACTTAAGGTTCCAAGGGACCAGAATCCATGAAGGTGTAGTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGCACTTAAGGTTCCAAGGGACCAGAATCCATGAAGGTGTAGTGGA  201

seq1  GGAATGGCAACAAGGAGTGGGAATTTCAACAGGAACAGGAAGTCGAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGCAACAAGGAGTGGGAATTTCAACAGGAACAGGAAGTCGAAGGC  251

seq1  AACAGCAAGCACAAAGTAGAAAATGTAAGAGCTATTTAAGTCCCCAGAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAAGCACAAAGTAGAAAATGTAAGAGCTATTTAAGTCCCCAGAGT  301

seq1  CTGTTCATAGTGAGTAGTCCCTTCAGCATGGCCACACCTCCTGAACTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCATAGTGAGTAGTCCCTTCAGCATGGCCACACCTCCTGAACTGCC  351

seq1  TTAAATAGCACAACCAATCACAGGAGACTATGAGGGCGTTTATCATTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGCACAACCAATCACAGGAGACTATGAGGGCGTTTATCATTCAA  401

seq1  ACCAGCCCAGTGTCTTTTCTCCATTCTTTCTGTGTTTAGATAAGTCTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCCCAGTGTCTTTTCTCCATTCTTTCTGTGTTTAGATAAGTCTTAG  451

seq1  GCCTAATGATCCCACGATCATTTAAGACGAAAAGATGTTCAAAGTATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATGATCCCACGATCATTTAAGACGAAAAGATGTTCAAAGTATTTT  501

seq1  GGACTAGTGAGTAGTACTGATGACGTTTCTTAAGGTGGACAATGAGTTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGTGAGTAGTACTGATGACGTTTCTTAAGGTGGACAATGAGTTGC  551

seq1  CCTGAAACTGAGAAGAAAGCAGACTCCATCAAGATCATTGATCAGCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACTGAGAAGAAAGCAGACTCCATCAAGATCATTGATCAGCACAG  601

seq1  TTGGAGTCATGGATTTCTGTTGATTTTTTTTTTTTTTTCCTGTTCATCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTCATGGATTTCTGTTGATTTTTTTTTTTTTTTCCTGTTCATCTT  651

seq1  GACCCCTGCCCTTCCTGCAACTGCTTCACACTTCCTGTGACAATTCGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTGCCCTTCCTGCAACTGCTTCACACTTCCTGTGACAATTCGGTT  701

seq1  GCTTCCATGTGCAATGGCTCAGGAGAGTTGGTTCTGCAGCTTCCACTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCATGTGCAATGGCTCAGGAGAGTTGGTTCTGCAGCTTCCACTTCT  751

seq1  CAAGCTAGGAAAGTCCTGTGGGCTGTGCTGACCATCGTTTCCTGACCACG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTAGGAAAGTCCTGTGGGCTGTGCTGACCATCGTTTCCTGACCACG  801

seq1  TCTGTGGAACTTTCCAAAGAGGCATGGAGCAGAGCTGCACCTCAGGAACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGAACTTTCCAAAGAGGCATGGAGCAGAGCTGCACCTCAGGAACA  851

seq1  GAGAGAAACGAGAGAAAACAAGACCGATCCCAGAGGAAGCACAAGAAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAACGAGAGAAAACAAGACCGATCCCAGAGGAAGCACAAGAAATG  901

seq1  TGGGAATCCAAATAGAGAGTCATTACATTGACTTCTGTTTAAGTCCCTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCCAAATAGAGAGTCATTACATTGACTTCTGTTTAAGTCCCTGC  951

seq1  CATTCTCTTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTCTTACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  1001

seq1  GTGTGTGTGTTCTGGCAATTCCTCCAGTTTTCTGGGTTATCCACTTTACT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTTCTGGCAATTCCTCCAGTTTTCTGGGTTATCCACTTTACT  1051

seq1  AATGAATTC  1109
      |||||||||
seq2  AATGAATTC  1060