BAC Information

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BAC

Clone NameB6Ng01-110E06
Chromosome3 (Build37)
Map Location 17,231,333 - 17,395,756
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040034, LOC100040059, EG383936, LOC622737
Downstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110E06.bB6Ng01-110E06.g
ACCDH916935DH916936
length9891,100
definitionDH916935|Mus musculus domesticus DNA, BAC clone: B6Ng01-110E06, 5' end.DH916936|Mus musculus domesticus DNA, BAC clone: B6Ng01-110E06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,395,226 - 17,395,756)(17,231,333 - 17,232,459)
sequence
gaattctattcttatgatctctgtacacactttccttggtcagcgttctg
gtgctgtgaagagacacgagggcccagccaactcttttcttttttatttt
taaaagttaatcattttatttatttacatttcaaatgttatctccatccc
ggtttcccctccatgagcccctaagaccctcctccgtcctgtttgcctca
aagaggatgctttgctacctaccaattcccaccttattcatctagcatct
cccttctctgcacatcaagcctccacaggaccgagcccatcccttccctt
tgaggacagacaaggcagtcctctgctacatatgtagtgggtgccactga
ccaagccaactcttatgaaagcaaaacatttcattggatcttctttacaa
tttcaggtatttagttcatttcaattgtggcataggcatgcatggtgctg
gagaagcagttgagaattatacatccagatagtcaggcaggaagaggagg
gagatgctgtgtgctgtaattattatagattgcttctggtttttacaatt
tttctgcctctttctacaaggagctttgggagtatgtgatgtgatacaaa
tatcccatttaggattgagcattctgtagtctctacacctctatacaccg
accagttgtagatcgctgtattattactagaaaaaaaaacttattgatga
tactataatctttattcattaggagttggtttaatgctatgtctatgtaa
caaggtaataacagaaggttctttttcctagggcctgtgtcctgtctagc
cacgtgttcatgacaccattattagtatcagatatgaattttaacttctg
gagcagccttaaatctaaatagaaagtggctggttacttccatgagaatc
acgctgttattcacgaatgggcatttctttccaggcttggcatagatgta
tatatgattatatatcataaatacttgtgtgattatata
gaattctttttcttgagcatcatatatcatatgcagataggtatttctga
ttttgatcttcagaatatggtatttataggaaggcaagtattaggactgt
gatttaaaataatggggaatatagaacaaaggtgattaataattgtgcca
tgaaaattaaatcattttgtattagagaaacgggaatataaaggaaagtt
ttcaaaataaagccttttttattaaaaataaaaatattcaatgttaatac
attttaaatactgtagaaaacaactctttcacaattaaaaataaatagca
attttatgctgatatattttagtagaataatttgcttttcgaaattttaa
gaataaaattatatccatatttctgtcataatgtaaaaatggtcatttat
aaattttggctatgcactgtggtttgttgttacagatgagtaactgaaag
taataaatgtattttaatgtttcacaatgatgtcgtatgtgtatatagtt
tataaagaagtataaaatattaaaattaggaataaatacgaacaaaagat
atgagtaataaagcctttctatatgcatcaagattgtattttattctggg
catatatttagtgcaaactgtgagcaataaatgcgtgctgtttttaaaac
acagcacaaaattagtgtgttaagagctactctacaaaaatagtgcttta
tataaaaatagtattagtaagcatgcattagtaagcattgggtcttatca
ttttaagtgaagagtttggtatatctatattacgagtaaagaaattcgag
ttactagagaatgatatatagtatgcaccatatttcacaagaatgcctct
tctcctaaagtatttaccctgtgtcttcaaaatgttattgagaaataagt
gtacagctactggtaccttccttaaatgcactgaaaacgtagaatgcatt
tgattacatagtgtagactgatattaaatatctatggctcgatgaaaaaa
cttactgacgataaaaagaaaactgaaaatcttgtaacgattgcatgcaa
gttgctagtgagcctttttagaaatagatggtattttttaccacatgcaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_17395226_17395756
seq2: B6Ng01-110E06.b_45_575 (reverse)

seq1  AATCTATAATAATTACAGCACACAGCATCTCCCTCCTCTTCCTGCCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAATAATTACAGCACACAGCATCTCCCTCCTCTTCCTGCCTGAC  50

seq1  TATCTGGATGTATAATTCTCAACTGCTTCTCCAGCACCATGCATGCCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGATGTATAATTCTCAACTGCTTCTCCAGCACCATGCATGCCTAT  100

seq1  GCCACAATTGAAATGAACTAAATACCTGAAATTGTAAAGAAGATCCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACAATTGAAATGAACTAAATACCTGAAATTGTAAAGAAGATCCAATG  150

seq1  AAATGTTTTGCTTTCATAAGAGTTGGCTTGGTCAGTGGCACCCACTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTGCTTTCATAAGAGTTGGCTTGGTCAGTGGCACCCACTACAT  200

seq1  ATGTAGCAGAGGACTGCCTTGTCTGTCCTCAAAGGGAAGGGATGGGCTCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCAGAGGACTGCCTTGTCTGTCCTCAAAGGGAAGGGATGGGCTCG  250

seq1  GTCCTGTGGAGGCTTGATGTGCAGAGAAGGGAGATGCTAGATGAATAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGTGGAGGCTTGATGTGCAGAGAAGGGAGATGCTAGATGAATAAGG  300

seq1  TGGGAATTGGTAGGTAGCAAAGCATCCTCTTTGAGGCAAACAGGACGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTGGTAGGTAGCAAAGCATCCTCTTTGAGGCAAACAGGACGGAG  350

seq1  GAGGGTCTTAGGGGCTCATGGAGGGGAAACCGGGATGGAGATAACATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTCTTAGGGGCTCATGGAGGGGAAACCGGGATGGAGATAACATTTG  400

seq1  AAATGTAAATAAATAAAATGATTAACTTTTAAAAATAAAAAAGAAAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAAATAAATAAAATGATTAACTTTTAAAAATAAAAAAGAAAAGAG  450

seq1  TTGGCTGGGCCCTCGTGTCTCTTCACAGCACCAGAACGCTGACCAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGGGCCCTCGTGTCTCTTCACAGCACCAGAACGCTGACCAAGGAA  500

seq1  AGTGTGTACAGAGATCATAAGAATAGAATTC  531
      |||||||||||||||||||||||||||||||
seq2  AGTGTGTACAGAGATCATAAGAATAGAATTC  531

seq1: chr3_17231333_17232459
seq2: B6Ng01-110E06.g_64_1163

seq1  GAATTCTTTTTCTTGAGCATCATATATCATATGCAGATAGGTATTTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTCTTGAGCATCATATATCATATGCAGATAGGTATTTCTGA  50

seq1  TTTTGATCTTCAGAATATGGTATTTATAGGAAGGCAAGTATTAGGACTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATCTTCAGAATATGGTATTTATAGGAAGGCAAGTATTAGGACTGT  100

seq1  GATTTAAAATAATGGGGAATATAGAACAAAGGTGATTAATAATTGTGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTAAAATAATGGGGAATATAGAACAAAGGTGATTAATAATTGTGCCA  150

seq1  TGAAAATTAAATCATTTTGTATTAGAGAAACGGGAATATAAAGGAAAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATTAAATCATTTTGTATTAGAGAAACGGGAATATAAAGGAAAGTT  200

seq1  TTCAAAATAAAGCCTTTTTTATTAAAAATAAAAATATTCAATGTTAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATAAAGCCTTTTTTATTAAAAATAAAAATATTCAATGTTAATAC  250

seq1  ATTTTAAATACTGTAGAAAACAACTCTTTCACAATTAAAAATAAATAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATACTGTAGAAAACAACTCTTTCACAATTAAAAATAAATAGCA  300

seq1  ATTTTATGCTGATATATTTTAGTAGAATAATTTGCTTTTCGAAATTTTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATGCTGATATATTTTAGTAGAATAATTTGCTTTTCGAAATTTTAA  350

seq1  GAATAAAATTATATCCATATTTCTGTCATAATGTAAAAATGGTCATTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATTATATCCATATTTCTGTCATAATGTAAAAATGGTCATTTAT  400

seq1  AAATTTTGGCTATGCACTGTGGTTTGTTGTTACAGATGAGTAACTGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTGGCTATGCACTGTGGTTTGTTGTTACAGATGAGTAACTGAAAG  450

seq1  TAATAAATGTATTTTAATGTTTCACAATGATGTCGTATGTGTATATAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATGTATTTTAATGTTTCACAATGATGTCGTATGTGTATATAGTT  500

seq1  TATAAAGAAGTATAAAATATTAAAATTAGGAATAAATACGAACAAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAAGTATAAAATATTAAAATTAGGAATAAATACGAACAAAAGAT  550

seq1  ATGAGTAATAAAGCCTTTCTATATGCATCAAGATTGTATTTTATTCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAATAAAGCCTTTCTATATGCATCAAGATTGTATTTTATTCTGGG  600

seq1  CATATATTTAGTGCAAACTGTGAGCAATAAATGCGTGCTGTTTTTAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATTTAGTGCAAACTGTGAGCAATAAATGCGTGCTGTTTTTAAAAC  650

seq1  ACAGCACAAAATTAGTGTGTTAAGAGCTACTCTACAAAAATAGTGCTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACAAAATTAGTGTGTTAAGAGCTACTCTACAAAAATAGTGCTTTA  700

seq1  TATAAAAATAGTATTAGTAAGCATGCATTAGTAAGCATTGGGTCTTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAATAGTATTAGTAAGCATGCATTAGTAAGCATTGGGTCTTATCA  750

seq1  TTTTAAGTGAAGAGTTTGGTATATCTATATTACGAGTAAAGAAATTCGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTGAAGAGTTTGGTATATCTATATTACGAGTAAAGAAATTCGAG  800

seq1  TTACTAGAGAATGATATATAGTATGCACCATATTTCACAAGAATGCCTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAGAATGATATATAGTATGCACCATATTTCACAAGAATGCCTCT  850

seq1  TCTCCTAAAGTATTTACCCTGTGTCTTCAAAATGTTATTGAGAAATAAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAAGTATTTACCCTGTGTCTTCAAAATGTTATTGAGAAATAAGT  900

seq1  GTACAGCTACTGGTACCTTCCTTAAATGCACTGAAAACGTAGAAATGCAT  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GTACAGCTACTGGTACCTTCCTTAAATGCACTGAAAACGTAG-AATGCAT  949

seq1  TTGATTACATAGTGTAAGAACTGATATTAAAATTATCTATGGCTCGAATG  1000
      ||||||||||||||||   ||||||||||||  ||||||||||||| |||
seq2  TTGATTACATAGTGTA--GACTGATATTAAA--TATCTATGGCTCG-ATG  994

seq1  AAAAAAAAACCTTTACTTGACAGATAAAAAGAAAACCTGAAAAATCTTGT  1050
      ||||||      |||| |||| ||||||||||||| ||| ||||||||||
seq2  AAAAAA-----CTTAC-TGAC-GATAAAAAGAAAA-CTG-AAAATCTTGT  1035

seq1  AAAACAGATTGGCATGCAAAGTGCTTAGTGGAAGCACTATTTTTAGAAAT  1100
      ||    |||| ||||||||  ||| |||||  |||    |||||||||||
seq2  AA---CGATT-GCATGCAAGTTGC-TAGTG--AGC---CTTTTTAGAAAT  1075

seq1  AGATGAGTTATTTTTATCCACATGCAA  1127
      ||||  | |||||||  ||||||||||
seq2  AGAT--GGTATTTTTTACCACATGCAA  1100