BAC Information

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BAC

Clone NameB6Ng01-110E14
Chromosome3 (Build37)
Map Location 26,548,120 - 26,707,085
singlet/doubletdoublet
Overlap geneSpata16
Upstream geneNlgn1, LOC621017, LOC229152
Downstream geneLOC665258, Ect2, Aadacl1, LOC100040527, Tnfsf10, Ghsr, Fndc3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110E14.bB6Ng01-110E14.g
ACCDH916951DH916952
length979947
definitionDH916951|Mus musculus domesticus DNA, BAC clone: B6Ng01-110E14, 5' end.DH916952|Mus musculus domesticus DNA, BAC clone: B6Ng01-110E14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,706,321 - 26,707,085)(26,548,120 - 26,548,636)
sequence
gaattctaggttggcgaatgctctagtttaaatgtttatgcttttccaag
attcatgctgaaatctaaaactcaatgcaatcatcttaggaggcttctta
gaaagtgatttactcaagagagcccgatcttcttgaataggactagtatt
ctcatgaaaggactagtgagtttgttttgtagtgtctgctaccacggggc
ccagagataccgtctgtcacaggtaggcctttgctaaacattagtttttg
tttctttctttcttttattattttattttactatattttattttattttt
ttcgagacagggtttctctgtagctctggctgtcctggaactcactttgt
agaccaggctggcctcgaactctgaaatccacctgcctctgcctcccaag
tgctgggtttaaaggcgtgcgccaccacgcccagctagtctttgtttctt
atcttgaacttcttgcctttagagcttcaatgaaccagtcccccttcctt
ataaaacacatagtctaaaatatttctttataggaacctgaagagattca
ggtctgagttggtataagagtggagagctgctaccgtaaataccatgaaa
attgttgaagcaggtttggaattgggtatctggaactgaagagcctgtag
gatgttggaggtgggtgtcaggaactgaggaaaggcttattctggtgaga
attcagaagaagcaagctgtagagaaagctacaaggttgttagagaataa
ccaagtagctgggaacagaatattgctagaaataggaacaatgaaggtca
ttttgataaggctcaatggactataccatatgccagtccctcagtcctta
tgtatggacaaatggatccaactacgccatgggcatccctttcagaagga
atagagtaaacctggtgcacccacatggtgacactcccgagatgtgaaga
atgcaagggctgcaagacaagacacctct
gaattcatttttctctctattttttttttttttggattggatattttctt
tatttacacttcaaatggtttccccttttcaggtctccccttcagaaacc
tccatcccatcccccctgcctctatgagggtgctcccccaccccttccca
actcctatcccccttacctggtattcccctacatgggggcattgaacacc
ctcaggcccaagggcctctcctcacactgaagtccaacaaggccatcatc
tgccacatatgtggccagggtcatgggtcactccatgtgtattctttggt
tggtggttcagtccccaggagctctggggcggggagggggtctggcctgt
tgacactgttgctctctccatgggactgcaaatcccctcagctccttcag
tcccttctccaattcttctgtgggagacccctgagctcagtccaatggtt
gactgtgagcttccgcctctgtatttgtcaggctctggcagagcctctca
gaaaacagatatattaggctgccatcagcaagcacttgctgacatccaca
ataatgtcctggtttggtggccatataatgggacggatcccaaggtgggg
gagtctctggatggcttttcttttagtctctgcttcacactttatctcca
tatttattcctgtgagtattttgttcacctttctaaatacccaacttttg
ggcttatcagtgagtacataccatgtttgttcctttggagaaggttcaat
gaggtgctgagaagaaagatgtattcttttgatttaggatggaatgtttt
atagatatctatctgttaaatccacttggtccataacttctgttagtttc
actgtgtctcagtttagtttctgtttttggtgatgaaagtggagtgttga
agtctcccactatattgtgtgagctttagtaaatttctttttcaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_26706321_26707085
seq2: B6Ng01-110E14.b_44_808 (reverse)

seq1  TTCCCAGCTACTTGGTTATTCTCTAACAACCTTGTAGCTTTCTCTACAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGCTACTTGGTTATTCTCTAACAACCTTGTAGCTTTCTCTACAGC  50

seq1  TTGCTTCTTCTGAATTCTCACCAGAATAAGCCTTTCCTCAGTTCCTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCTTCTGAATTCTCACCAGAATAAGCCTTTCCTCAGTTCCTGACA  100

seq1  CCCACCTCCAACATCCTACAGGCTCTTCAGTTCCAGATACCCAATTCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCCAACATCCTACAGGCTCTTCAGTTCCAGATACCCAATTCCAA  150

seq1  ACCTGCTTCAACAATTTTCATGGTATTTACGGTAGCAGCTCTCCACTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCTTCAACAATTTTCATGGTATTTACGGTAGCAGCTCTCCACTCTT  200

seq1  ATACCAACTCAGACCTGAATCTCTTCAGGTTCCTATAAAGAAATATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAACTCAGACCTGAATCTCTTCAGGTTCCTATAAAGAAATATTTTA  250

seq1  GACTATGTGTTTTATAAGGAAGGGGGACTGGTTCATTGAAGCTCTAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATGTGTTTTATAAGGAAGGGGGACTGGTTCATTGAAGCTCTAAAGG  300

seq1  CAAGAAGTTCAAGATAAGAAACAAAGACTAGCTGGGCGTGGTGGCGCACG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGTTCAAGATAAGAAACAAAGACTAGCTGGGCGTGGTGGCGCACG  350

seq1  CCTTTAAACCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCAGAGTTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTAAACCCAGCACTTGGGAGGCAGAGGCAGGTGGATTTCAGAGTTCG  400

seq1  AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGAGCTACAGAG  450

seq1  AAACCCTGTCTCGAAAAAAATAAAATAAAATATAGTAAAATAAAATAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGTCTCGAAAAAAATAAAATAAAATATAGTAAAATAAAATAATA  500

seq1  AAAGAAAGAAAGAAACAAAAACTAATGTTTAGCAAAGGCCTACCTGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAACAAAAACTAATGTTTAGCAAAGGCCTACCTGTGAC  550

seq1  AGACGGTATCTCTGGGCCCCGTGGTAGCAGACACTACAAAACAAACTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGTATCTCTGGGCCCCGTGGTAGCAGACACTACAAAACAAACTCAC  600

seq1  TAGTCCTTTCATGAGAATACTAGTCCTATTCAAGAAGATCGGGCTCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTTTCATGAGAATACTAGTCCTATTCAAGAAGATCGGGCTCTCTT  650

seq1  GAGTAAATCACTTTCTAAGAAGCCTCCTAAGATGATTGCATTGAGTTTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAAATCACTTTCTAAGAAGCCTCCTAAGATGATTGCATTGAGTTTTA  700

seq1  GATTTCAGCATGAATCTTGGAAAAGCATAAACATTTAAACTAGAGCATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAGCATGAATCTTGGAAAAGCATAAACATTTAAACTAGAGCATTC  750

seq1  GCCAACCTAGAATTC  765
      |||||||||||||||
seq2  GCCAACCTAGAATTC  765

seq1: chr3_26548120_26548636
seq2: B6Ng01-110E14.g_70_586

seq1  GAATTCATTTTTCTCTCTATTTTTTTTTTTTTTGGATTGGATATTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTCTCTCTATTTTTTTTTTTTTTGGATTGGATATTTTCTT  50

seq1  TATTTACACTTCAAATGGTTTCCCCTTTTCAGGTCTCCCCTTCAGAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACACTTCAAATGGTTTCCCCTTTTCAGGTCTCCCCTTCAGAAACC  100

seq1  TCCATCCCATCCCCCCTGCCTCTATGAGGGTGCTCCCCCACCCCTTCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCATCCCCCCTGCCTCTATGAGGGTGCTCCCCCACCCCTTCCCA  150

seq1  ACTCCTATCCCCCTTACCTGGTATTCCCCTACATGGGGGCATTGAACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTATCCCCCTTACCTGGTATTCCCCTACATGGGGGCATTGAACACC  200

seq1  CTCAGGCCCAAGGGCCTCTCCTCACACTGAAGTCCAACAAGGCCATCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCCAAGGGCCTCTCCTCACACTGAAGTCCAACAAGGCCATCATC  250

seq1  TGCCACATATGTGGCCAGGGTCATGGGTCACTCCATGTGTATTCTTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACATATGTGGCCAGGGTCATGGGTCACTCCATGTGTATTCTTTGGT  300

seq1  TGGTGGTTCAGTCCCCAGGAGCTCTGGGGCGGGGAGGGGGTCTGGCCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGTTCAGTCCCCAGGAGCTCTGGGGCGGGGAGGGGGTCTGGCCTGT  350

seq1  TGACACTGTTGCTCTCTCCATGGGACTGCAAATCCCCTCAGCTCCTTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACACTGTTGCTCTCTCCATGGGACTGCAAATCCCCTCAGCTCCTTCAG  400

seq1  TCCCTTCTCCAATTCTTCTGTGGGAGACCCCTGAGCTCAGTCCAATGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCTCCAATTCTTCTGTGGGAGACCCCTGAGCTCAGTCCAATGGTT  450

seq1  GACTGTGAGCTTCCGCCTCTGTATTTGTCAGGCTCTGGCAGAGCCTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGAGCTTCCGCCTCTGTATTTGTCAGGCTCTGGCAGAGCCTCTCA  500

seq1  GAAAACAGATATATTAG  517
      |||||||||||||||||
seq2  GAAAACAGATATATTAG  517