BAC Information

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BAC

Clone NameB6Ng01-110K21
Chromosome3 (Build37)
Map Location 64,133,283 - 64,275,606
singlet/doubletdoublet
Overlap gene4930518C23Rik, EG667031, EG637053, LOC672951, EG639869
Upstream geneMme, Plch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004
Downstream geneEG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110K21.bB6Ng01-110K21.g
ACCDH917237DH917238
length1,088614
definitionDH917237|Mus musculus domesticus DNA, BAC clone: B6Ng01-110K21, 5' end.DH917238|Mus musculus domesticus DNA, BAC clone: B6Ng01-110K21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,133,283 - 64,134,372)(64,274,989 - 64,275,606)
sequence
gaattcctgtgtgtgtgtgtgtattcagatagttgttttgctttggaatt
tattttgtcttattatattttatttgcttgttttgcattttgcttttttt
gttttaatttctcctttcttaagaaacagagtgatgaaagctgggcgtgg
tggcacatgccttttatcccaggagaggacttgggaggcagaggcaggca
gatttctgagtttgaggccagcctggtctacagagtgagttccaggacag
ccaggactaaaaagagaaaccctgtctcgaaaaacaaaaaacaaaaagaa
agaaagaaagaaagaaagaaaggaaggaaggaaggaaggaaggaagaaag
aaagaaagaaagaaagaaagaaagaaaaaaaagagtcagagagaagaaaa
aatatgaaggtacatgggcagtgagaaggggaagatctaaggtagaaaga
gggagaaaaagaccatcgagatatactatttgaaaaatttaagtaaaaaa
caaatactttcttattcctagaatacaatataaatttatttgtgaatatc
acccttattcagtatttcaaagtatacatctttgtatacatctatatgct
atgaaaggagggttgcgtttgacacgaaaatttttaaattgacttagcaa
gaaaatgtttctggactattactcttatgaagttctgttatgttttttaa
attttctccttgggaactgacttaattttatttttaccatttatgaaaca
tcgttaatttttaatattatgttggggtgattatgttgagaggaaatacc
tttcacgtttttcaggaagataattagagtgttaaattattttaaacagg
aacagactaagcaaactgtcccatcttcaatatctcatatggtattagtt
tactcttgatcatcagatgataaagaactgtcactacatttagttcagca
attccagagtagtcaaagatgtcctttagccaagttcctttctaggctct
ccatatgtcatgctttgtttgctctctttgctcagactcctggggctgat
attcttttattgatagacatggtgtctcatggaatgca
gaattctccttactgagtggtactgaggacaaagcttcatcaaaacctct
gacaatgaaaggcttctgaaataaaatcagaagacatattcaaaccacaa
cacaaaacctatgagatggttctctggggagtggtatggaatgctgattt
ccaggctcaaagtagctaattagaccctttaattcacatattatttgcac
tctctctctctctctctctctctctctctatatatatatatatatatata
tatatatatatatatatataaataaaattgtcaccccctataatgaaaag
gaaagaggatcatggatcatgaaaccccagtccctcccagagaggtatat
actgttggtggttggtaggggagtagggaaaagagatatagtcttcagta
atctatcagtggaacagacacttacacctacacacgaacacacacgcaca
aacgtgcgggagagacagcgagataaagtagggaggagggaaagagaaga
taacgaggggaatattattggacttgcataaaaatgtcaaatgtaacata
tacatgtacatattataatagtaaatatatctgtttatttaaaagaaata
aaatatgggtcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64133283_64134372
seq2: B6Ng01-110K21.b_48_1135

seq1  GAATTCCTGTGTGTGTGTGTGTATTCAGATAGTTGTTTTGCTTTGGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTGTGTGTGTGTGTATTCAGATAGTTGTTTTGCTTTGGAATT  50

seq1  TATTTTGTCTTATTATATTTTATTTGCTTGTTTTGCATTTTGCTTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTCTTATTATATTTTATTTGCTTGTTTTGCATTTTGCTTTTTTT  100

seq1  GTTTTAATTTCTCCTTTCTTAAGAAACAGAGTGATGAAAGCTGGGCGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATTTCTCCTTTCTTAAGAAACAGAGTGATGAAAGCTGGGCGTGG  150

seq1  TGGCACATGCCTTTTATCCCAGGAGAGGACTTGGGAGGCAGAGGCAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACATGCCTTTTATCCCAGGAGAGGACTTGGGAGGCAGAGGCAGGCA  200

seq1  GATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGAGTTTGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAG  250

seq1  CCAGGACTAAAAAGAGAAACCCTGTCTCGAAAAACAAAAAACAAAAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTAAAAAGAGAAACCCTGTCTCGAAAAACAAAAAACAAAAAGAA  300

seq1  AGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAGAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGAAAG  350

seq1  AAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAAGAGTCAGAGAGAAGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGAAAGAAAGAAAGAAAGAAAAAAAAGAGTCAGAGAGAAGAAAA  400

seq1  AATATGAAGGTACATGGGCAGTGAGAAGGGGAAGATCTAAGGTAGAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGAAGGTACATGGGCAGTGAGAAGGGGAAGATCTAAGGTAGAAAGA  450

seq1  GGGAGAAAAAGACCATCGAGATATACTATTTGAAAAATTTAAGTAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAAAGACCATCGAGATATACTATTTGAAAAATTTAAGTAAAAAA  500

seq1  CAAATACTTTCTTATTCCTAGAATACAATATAAATTTATTTGTGAATATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACTTTCTTATTCCTAGAATACAATATAAATTTATTTGTGAATATC  550

seq1  ACCCTTATTCAGTATTTCAAAGTATACATCTTTGTATACATCTATATGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTATTCAGTATTTCAAAGTATACATCTTTGTATACATCTATATGCT  600

seq1  ATGAAAGGAGGGTTGCGTTTGACACGAAAATTTTTAAATTGACTTAGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGGAGGGTTGCGTTTGACACGAAAATTTTTAAATTGACTTAGCAA  650

seq1  GAAAATGTTTCTGGACTATTACTCTTATGAAGTTCTGTTATGTTTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGTTTCTGGACTATTACTCTTATGAAGTTCTGTTATGTTTTTTAA  700

seq1  ATTTTCTCCTT-GGAACTGACTTAATTTTATTTTTACCATTTATGAAACA  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCCTTGGGAACTGACTTAATTTTATTTTTACCATTTATGAAACA  750

seq1  TCGTTAA-TTTTAATATTATGTTGGGGTGATTATGTTGAGAGGAAATACC  798
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTAATTTTTAATATTATGTTGGGGTGATTATGTTGAGAGGAAATACC  800

seq1  TTTCA-GGTTTTCAGGAAGATAATTAGAGTGTTAAATTATTTTAAACAGG  847
      ||||| | ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACGTTTTTCAGGAAGATAATTAGAGTGTTAAATTATTTTAAACAGG  850

seq1  AACAGACTAAGCAAACTGTCCCATCTTCAATATCTCATATGGTATTAGTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACTAAGCAAACTGTCCCATCTTCAATATCTCATATGGTATTAGTT  900

seq1  TACTCTTGATCATCAAGATGATAAAGAACTGTCACTACATTTAGTTCAGC  947
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACTCTTGATCATC-AGATGATAAAGAACTGTCACTACATTTAGTTCAGC  949

seq1  AATTCCAGAGTAGGTCAAAAGATTGTCCTTTAGCCAAAGTTCTTTCTAGG  997
      |||||||||||| ||| ||||| ||||||||||||||  | |||||||||
seq2  AATTCCAGAGTA-GTC-AAAGA-TGTCCTTTAGCCAAGTTCCTTTCTAGG  996

seq1  CTCTCCATATTGTCATGCTTTGTTTGCTCTCTTTGCTCAGACTCCT-GGG  1046
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  CTCTCCATA-TGTCATGCTTTGTTTGCTCTCTTTGCTCAGACTCCTGGGG  1045

seq1  CTGATA-TCTTTTATTAATAGGACAT-GTGTCTCCATGGAAATGCA  1090
      |||||| ||||||||| ||| ||||| |||||| ||||| ||||||
seq2  CTGATATTCTTTTATTGATA-GACATGGTGTCT-CATGG-AATGCA  1088

seq1: chr3_64274989_64275606
seq2: B6Ng01-110K21.g_67_680 (reverse)

seq1  CATGA-CCATATTTTATTTCATTTAAGTTAAACAGATATATTTACTATTA  49
      ||||| |||||||||||||| |||||  ||||||||||||||||||||||
seq2  CATGACCCATATTTTATTTCTTTTAA-ATAAACAGATATATTTACTATTA  49

seq1  TAATATGTACATGTAATATGTTACATTTTGACATTTTTATGCATGTCCAA  99
      |||||||||||||| |||||||||| ||||||||||||||||| ||||||
seq2  TAATATGTACATGT-ATATGTTACA-TTTGACATTTTTATGCAAGTCCAA  97

seq1  TAATATTCACCTGGTTATCTTCTCTTGTCCCTCCTCCCTACTTTATATTT  149
      |||||||| ||| ||||||||||||| |||||||||||||||||||  | 
seq2  TAATATTCCCCTCGTTATCTTCTCTT-TCCCTCCTCCCTACTTTAT-CTC  145

seq1  GATGTCTTTGCTGTGTGTTTGTGTGTGTGTGTTCGTGTGTAGGTGTAAGT  199
      | ||||| | | |   ||||||| ||||||||||||||||||||||||||
seq2  GCTGTCTCTCCCGCACGTTTGTGCGTGTGTGTTCGTGTGTAGGTGTAAGT  195

seq1  GTCTGTTCCACTGATAGATTACTGAAGACTATGCCTCTTTTCCCTACTCC  249
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GTCTGTTCCACTGATAGATTACTGAAGACTATATCTCTTTTCCCTACTCC  245

seq1  CCTACCAACCACCAACAGTATATACCTCTCTGGGAGGGACTGGGGTTTCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAACCACCAACAGTATATACCTCTCTGGGAGGGACTGGGGTTTCA  295

seq1  TGATCCATGATCCTCTTTCCTTTTCATTATAGGGGGTGACAATTTTATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCATGATCCTCTTTCCTTTTCATTATAGGGGGTGACAATTTTATTT  345

seq1  ATATATATATATATATATATATATATATATATATATATAGAGAGAGAGAG  399
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATATAGAGAGAGAG  395

seq1  AGAGAGAGAGAGAGAGAGAGTGCAAATAATATGTGAATTAAAGGGTCTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGTGCAAATAATATGTGAATTAAAGGGTCTAA  445

seq1  TTAGCTACTTTGAGCCTGGAAATCAGCATTCCATACCACTCCCCAGAGAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTACTTTGAGCCTGGAAATCAGCATTCCATACCACTCCCCAGAGAA  495

seq1  CCATCTCATAGGTTTTGTGTTGTGGTTTGAATATGTCTTCTGATTTTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCATAGGTTTTGTGTTGTGGTTTGAATATGTCTTCTGATTTTATT  545

seq1  TCAGAAGCCTTTCATTGTCAGAGGTTTTGATGAAGCTTTGTCCTCAGTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCCTTTCATTGTCAGAGGTTTTGATGAAGCTTTGTCCTCAGTAC  595

seq1  CACTCAGTAAGGAGAATTC  618
      |||||||||||||||||||
seq2  CACTCAGTAAGGAGAATTC  614