BAC Information

Click to search

BAC

Clone NameB6Ng01-110M01
Chromosome3 (Build37)3 (Build37)
Map Location 93,633,547 - 93,634,55593,926,390 - 93,926,876
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3
Downstream geneEG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110M01.bB6Ng01-110M01.g
ACCDH917286DH917287
length1,0191,092
definitionDH917286|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M01, 5' end.DH917287|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(93,633,547 - 93,634,555)(93,926,390 - 93,926,876)
sequence
gaattccaaggagacaaaatagcagattctggtggaatctcctccctctt
gtgaaccccttcaaacttctaacctatctccatacctaagtgtcatctca
ttatcattattaattaccatattattctatgtactgataacaaggtttag
agcttgcttgccactgtgctttaacactgagctttatattcctagattga
cactagttcttgtaaactcttttcaggaaaaactgtgtttttctcttatt
cttctctcatacattatatcccaacctcagttttatgtccctccaactcc
ttttactttctacccctgtttccctcttccccagatacatttctctttca
tttctcttcaaatacatcaggaagcctcccagggatattcactgacctag
cctaaattggtagaaatcctcatatcaaagtggacaaggcaacccaggag
agagagagagagagagagagagagagagagagagagagagagagagagat
tcattacaggcaaaaaacaaaaagcactatcatttaactggcctgagtaa
agtctttaagaagacaccccttcatgataaaaagctttggagagaatgac
atacaggtgatatatctaagtataatcatggaagcatagaattagctcaa
aatcaacattatcttaaatggagagaaatttattgggagctattaagaca
tctctattgtgttgatctccgaattgggcctctccccccgagaagaaaag
gggtcaaaagcgggccactgacgcactgttctgagaacaaccacagaatg
ttccagccctaagtcagcgccagatgtcctgaccacaagatgtaccctga
taccaccaagttccttcttccccatgtggttgccaaaagaaaattttctg
ctgccccatccctcctgctgagaagtacttcctcctttgcttgtgcattt
ctgctgccccattctcctgctgagaagtacttcccttttgcttgtgcatt
tagcctgagctgctgaata
gaattcagtagaaattcagtaagaattttaactactcagtaacattcaaa
tttactgctagtagagacagtgaaaataattaggcattacaaagaatgga
gcctgaatagctctgggctggtctgtagagtgttgacttgggacaatagc
cagtcttacccagacaagggaattcacaatggcctagggaataggtgggt
ttacctagaaagagttagggaattcccctgaaacaggtttcttcactagg
cccaaagaaacagcataatcaggcatttactaagaacccctggtggtggg
cttaacaatagactagcattacacctggctcccttcttagtggtagcagc
ctggtccctgcctacttttgatgtatacattccttttgtattgtgtcact
gtcactcaacagatgtatctcccttggtttcttgttgctcttctgtataa
aaagtttgatgcttgacttgaaaaattacactctgatactacacaatctc
tcctgtcgcttctgtctgttattcaccgactcctccacctgcaactagag
actcattctacacagacagagaccaaaaactcaataaagtcttagaaaga
ggtggcaaaaggtcaagagacaaaacaacaggagattgtccccttagcct
tatgtaacttagtttgagttggaattaattcagtatttcaaccaaaacct
gaggtttaggcccaaataagggttctttaaaatattttccatacttaacg
aattcttgaaaaactaaaaagatccttttatttttctttaatataagtaa
ctagaaaaggacagtgccaagataaaaaagctaaattagattaaaattta
aagcaaggccaagcatgatgacttttattccagcactcggggaggcagag
gaaggtatatctctgagtttgaagccagcctgatctagaagaatgagtcc
tggacagctggaccctgtctgctcatctctgatcaagccagaggagagca
tggttctgacagcactctgcatcaagtgcattatcctgtgctggtggaac
agtgtgcataagtggctgatctgatgggctcatcagtagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93633547_93634555
seq2: B6Ng01-110M01.b_46_1051

seq1  GAATTCCAAGGAGACAAAATAGCAGATTCTGGTGGAATCTCCTCCCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGAGACAAAATAGCAGATTCTGGTGGAATCTCCTCCCTCTT  50

seq1  GTGAACCCCTTCAAACTTCTAACCTATCTCCATACCTAAGTGTCATCTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACCCCTTCAAACTTCTAACCTATCTCCATACCTAAGTGTCATCTCA  100

seq1  TTATCATTATTAATTACCATATTATTCTATGTACTGATAACAAGGTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTATTAATTACCATATTATTCTATGTACTGATAACAAGGTTTAG  150

seq1  AGCTTGCTTGCCACTGTGCTTTAACACTGAGCTTTATATTCCTAGATTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGCTTGCCACTGTGCTTTAACACTGAGCTTTATATTCCTAGATTGA  200

seq1  CACTAGTTCTTGTAAACTCTTTTCAGGAAAAACTGTGTTTTTCTCTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTTCTTGTAAACTCTTTTCAGGAAAAACTGTGTTTTTCTCTTATT  250

seq1  CTTCTCTCATACATTATATCCCAACCTCAGTTTTATGTCCCTCCAACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTCATACATTATATCCCAACCTCAGTTTTATGTCCCTCCAACTCC  300

seq1  TTTTACTTTCTACCCCTGTTTCCCTCTTCCCCAGATACATTTCTCTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTCTACCCCTGTTTCCCTCTTCCCCAGATACATTTCTCTTTCA  350

seq1  TTTCTCTTCAAATACATCAGGAAGCCTCCCAGGGATATTCACTGACCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCAAATACATCAGGAAGCCTCCCAGGGATATTCACTGACCTAG  400

seq1  CCTAAATTGGTAGAAATCCTCATATCAAAGTGGACAAGGCAACCCAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATTGGTAGAAATCCTCATATCAAAGTGGACAAGGCAACCCAGGAG  450

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAT  500

seq1  TCATTACAGGCAAAAAACAAAAAGCACTATCATTTAACTGGCCTGAGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACAGGCAAAAAACAAAAAGCACTATCATTTAACTGGCCTGAGTAA  550

seq1  AGTCTTTAAGAAGACACCCCTTCATGATAAAAAGCTTTGGAGAGAATGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTAAGAAGACACCCCTTCATGATAAAAAGCTTTGGAGAGAATGAC  600

seq1  ATACAGGTGATATATCTAAGTATAATCATGGAAGCATAGAATTAGCTCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGGTGATATATCTAAGTATAATCATGGAAGCATAGAATTAGCTCAA  650

seq1  AATCAACATTATCTTAAATGGAGAGAAATTTATTGGGAGCTATTAAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACATTATCTTAAATGGAGAGAAATTTATTGGGAGCTATTAAGACA  700

seq1  TCTCTATTGTGTTGATCTCCGAATTGGGCCTCTCCCCCCGAGAAGAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTGTGTTGATCTCCGAATTGGGCCTCTCCCCCCGAGAAGAAAAG  750

seq1  GGGTCAAAAGCGGGCCACTGACGCACTGTTCTGAGAACAACCACAGAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCAAAAGCGGGCCACTGACGCACTGTTCTGAGAACAACCACAGAATG  800

seq1  TTCCAGCCCTAAGTCAGCGCCAGATGTCCTGACCACAAGATGTACCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCCCTAAGTCAGCGCCAGATGTCCTGACCACAAGATGTACCCTGA  850

seq1  TACCACCAAGTTCCTTCTTCCCCATGTGGTTGCCAAAAGAAAATTTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCAAGTTCCTTCTTCCCCATGTGGTTGCCAAAAGAAAATTTTCTG  900

seq1  CTGCCCCATCCCTCCTGCTGAGAAGTACTTCCTCCTTTGCTTGTGCATTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCCATCCCTCCTGCTGAGAAGTACTTCCTCCTTTGCTTGTGCATTT  950

seq1  CTGCTGCCCCATTCCTCCTGCTGAGAAGTACTTCCCCTTTTGCTTGTGCA  1000
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  CTGCTGCCCCATT-CTCCTGCTGAGAAGTACTT-CCCTTTTGCTTGTGCA  998

seq1  TTTAAGCCT  1009
      ||| |||||
seq2  TTT-AGCCT  1006

seq1: chr3_93926390_93926876
seq2: B6Ng01-110M01.g_683_1158

seq1  GAGACAA---AACAGGAGATAGTCCTCTTAGCCTTGTGTAACTTAGTTTA  47
      |||||||   |||||||||| |||| ||||||||| ||||||||||||| 
seq2  GAGACAAAACAACAGGAGATTGTCCCCTTAGCCTTATGTAACTTAGTTTG  50

seq1  AGTTGGAATTAATTCAGTAGTTCAACCAAAACCTGAGGTTTAGGCCCAAA  97
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTTGGAATTAATTCAGTATTTCAACCAAAACCTGAGGTTTAGGCCCAAA  100

seq1  GAAGAATTCTTTAAAATACTCTTCATACTT-ATGGATTCTTGACAAACTA  146
       |||  |||||||||||| | | ||||||| | | |||||||| ||||||
seq2  TAAGGGTTCTTTAAAATATTTTCCATACTTAACGAATTCTTGAAAAACTA  150

seq1  AAAAGATCCTTTTACTTTTTTCTTTAATATAAGTAACTAGAAAAGGACAG  196
      ||||||||||||||  ||||||||||||||||||||||||||||||||||
seq2  AAAAGATCCTTTTA--TTTTTCTTTAATATAAGTAACTAGAAAAGGACAG  198

seq1  TGCCAAGATAAAAAAGCTAAATTGGATTAAAAATTAAAAGCAAGGCCAAG  246
      ||||||||||||||||||||||| |||| |||||| ||||||||||||||
seq2  TGCCAAGATAAAAAAGCTAAATTAGATT-AAAATTTAAAGCAAGGCCAAG  247

seq1  CATGGTAACCTTTAATTCCAGCACT-TGGGAGGCAGAGGAAGGTAAATCT  295
      |||| | | |||| |||||||||||  |||||||||||||||||| ||||
seq2  CATGATGA-CTTTTATTCCAGCACTCGGGGAGGCAGAGGAAGGTATATCT  296

seq1  CTGAGTTTGAGGCCAGCCTGATCTAG-AGAATGAGTTCCAAGACAGCTGG  344
      |||||||||| ||||||||||||||| |||||||| |||  |||||||||
seq2  CTGAGTTTGAAGCCAGCCTGATCTAGAAGAATGAG-TCCTGGACAGCTGG  345

seq1  ACCCTGTCTTGCTCATCTTGTGATCAAGCCAGAGGAGAGCATGGTTCCTT  394
      |||||||| |||||||| | |||||||||||||||||||||||||||  |
seq2  ACCCTGTC-TGCTCATC-TCTGATCAAGCCAGAGGAGAGCATGGTTC--T  391

seq1  GACAGCACTCTGCAATCAAAGGTGGCATTATCCTGTGCTGGTGG-ACAGT  443
      ||||||||||||| |||||  || |||||||||||||||||||| |||||
seq2  GACAGCACTCTGC-ATCAA--GT-GCATTATCCTGTGCTGGTGGAACAGT  437

seq1  GTGCCACCGAATGGCTGATCTTGATGGGCTGGTCCATGTAGACA  487
      ||||     | ||||||||| |||||||||  ||   |||||||
seq2  GTGC--ATAAGTGGCTGATC-TGATGGGCTCATC--AGTAGACA  476