BAC Information

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BAC

Clone NameB6Ng01-110P24
Chromosome3 (Build37)
Map Location 94,662,894 - 94,791,199
singlet/doubletdoublet
Overlap genePogz, Psmb4, Selenbp1, Rfx5, Pik4cb
Upstream geneEG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn
Downstream geneZfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110P24.bB6Ng01-110P24.g
ACCDH917463DH917464
length1,154448
definitionDH917463|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P24, 5' end.DH917464|Mus musculus domesticus DNA, BAC clone: B6Ng01-110P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,790,047 - 94,791,199)(94,662,894 - 94,663,346)
sequence
gaattctcctatacaatgtcttgcctgggctttagaaaaatgtgtagttc
attttagtaaggcacgtgcatacttaatgcttccgtaaactttttaatca
agatatacactaactagatccttatattggagctagagctttgttaaact
ttatcagttcctagtccaagaacagtattttatcctccatccttttgcac
actgtacagggaaacagctagttgtttagtgaatgtttcatataatggag
gaagaaagggaaaccatttcccttggtacctcaagcacaaaggcgttagt
taattggcatatcatcaaaatatcgaaagggactggcagtaattcctaag
ctgaagtctccatgcctagaaacctagcggtatttatgtttatttcctaa
ggagcctcagtggagttaagtgcctcacttaactccagcatcagataacc
cagaagggcctcaggaagtgtgatctttttccttttctggatctagtaac
ccaagaggagccaggtggggaagaaaggcaactggagaacccaccctaga
gatttaaacactcatagaatacctgcctctcagagccatccataatcctg
cagcagaagttagatgcatagaagagggaccccagaccagcacagggtaa
gagaaaccctaaggcctctgcttttctggtcctaagatgcagactaaaaa
atagatacagggaaaagtcaagccagacaggaggtaccagtgaacccctc
ccagaagcacactcactctgaccagctctgaccttccatgagacagcttc
cggagaagctcaagacctttaggacctcggttccaccaaggtctggattc
ttcttgctttgcagcgacctcccttttctagaccctggactctgctgcca
aactaaacagaaatggaaacagtctgacctagctcccagaatggctgggc
tttgtctatacgtgaatgtgaagtgtaggttgtcacaatcctgggctctc
ttcctccaatgacctctacagctgggatctggggagcagaatgctggaag
aaatacctaaggcagctcagcagtgactatgagcacgagctatgactggg
ctccagtcctaatagtcctactggagtgaccttagacagtcatttatctt
ctct
actctgtagactagactggtctggaactcacacaggtttatctgcctctt
cctttgcctcccaggtactgggaataagccttttcccatgcctggctgtt
ttgctttttaaattaattattttatgtatattagtgctttgcctgcacat
atgtctgtacacctgtgtgtgcctggcaccattgtaggtcagaagaggac
aaacaggagttacagatggttgcaatgggaattgaacccatatcctctac
aagagcaacaaatgctcttaactaaccttaaccctaatcctaactttgag
ccaactctctctgtaactctttgtttttcgacagggtttcaaatagctca
ggcgagccttcaacttcctatttagctgaggctggccttatctcttaaag
atttatttatttatttatatgagtacaccgtagacatttactgacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94790047_94791199
seq2: B6Ng01-110P24.b_49_1202 (reverse)

seq1  AGAGAAGTTAAATGACTG-CTAAGGTCACT-CAGTAGTGACTATTAGACC  48
      ||||||| |||||||||| ||||||||||| |||||| |||||||||  |
seq2  AGAGAAGATAAATGACTGTCTAAGGTCACTCCAGTAG-GACTATTAGGAC  49

seq1  GGGAGCCCAGTCCATAGCTCGTGCTCATAGTCACTGCTGAGCTGCCTAGG  98
       |||||||||| |||||||||||||||||||||||||||||||||||  |
seq2  TGGAGCCCAGT-CATAGCTCGTGCTCATAGTCACTGCTGAGCTGCCTTAG  98

seq1  TTATTTCT--CAGCA-TCTGCTTCCCCAGATCCCAGCTGTAAGAGGTCAT  145
       |||||||  ||||| ||||| |||||||||||||||||| |||||||||
seq2  GTATTTCTTCCAGCATTCTGC-TCCCCAGATCCCAGCTGT-AGAGGTCAT  146

seq1  TGGAGAAGAAGAGCCCAGGA-TGTGACAACCTACACTTCCACATTCACGT  194
      ||||| |  ||||||||||| ||||||||||||||||| |||||||||||
seq2  TGGAGGAAGAGAGCCCAGGATTGTGACAACCTACACTT-CACATTCACGT  195

seq1  ATAGACAAAGCCCAAGCCATTCTGGGAGCTAGGTCAGACTGTTTCCATTT  244
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ATAGACAAAGCCC-AGCCATTCTGGGAGCTAGGTCAGACTGTTTCCATTT  244

seq1  CTGTTTAGTTTGGCAGCAGAGTCCAGGGTCTAG-AAAGGGAGGTCGCTGC  293
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGTTTAGTTTGGCAGCAGAGTCCAGGGTCTAGAAAAGGGAGGTCGCTGC  294

seq1  AAAGCAAGAAGAATCCAGACCTTGGTGGAACCGAGGTCCTAAAGGTCTTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAAGAAGAATCCAGACCTTGGTGGAACCGAGGTCCTAAAGGTCTTG  344

seq1  AGCTTCTCCGGAAGCTGTCTCATGGAAGGTCAGAGCTGGTCAGAGTGAGT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTCCGGAAGCTGTCTCATGGAAGGTCAGAGCTGGTCAGAGTGAGT  394

seq1  GTGCTTCTGGGAGGGGTTCACTGGTACCTCCTGTCTGGCTTGACTTTTCC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCTGGGAGGGGTTCACTGGTACCTCCTGTCTGGCTTGACTTTTCC  444

seq1  CTGTATCTATTTTTTAGTCTGCATCTTAGGACCAGAAAAGCAGAGGCCTT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTATTTTTTAGTCTGCATCTTAGGACCAGAAAAGCAGAGGCCTT  494

seq1  AGGGTTTCTCTTACCCTGTGCTGGTCTGGGGTCCCTCTTCTATGCATCTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTCTCTTACCCTGTGCTGGTCTGGGGTCCCTCTTCTATGCATCTA  544

seq1  ACTTCTGCTGCAGGATTATGGATGGCTCTGAGAGGCAGGTATTCTATGAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCTGCAGGATTATGGATGGCTCTGAGAGGCAGGTATTCTATGAG  594

seq1  TGTTTAAATCTCTAGGGTGGGTTCTCCAGTTGCCTTTCTTCCCCACCTGG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAATCTCTAGGGTGGGTTCTCCAGTTGCCTTTCTTCCCCACCTGG  644

seq1  CTCCTCTTGGGTTACTAGATCCAGAAAAGGAAAAAGATCACACTTCCTGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTGGGTTACTAGATCCAGAAAAGGAAAAAGATCACACTTCCTGA  694

seq1  GGCCCTTCTGGGTTATCTGATGCTGGAGTTAAGTGAGGCACTTAACTCCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTCTGGGTTATCTGATGCTGGAGTTAAGTGAGGCACTTAACTCCA  744

seq1  CTGAGGCTCCTTAGGAAATAAACATAAATACCGCTAGGTTTCTAGGCATG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGCTCCTTAGGAAATAAACATAAATACCGCTAGGTTTCTAGGCATG  794

seq1  GAGACTTCAGCTTAGGAATTACTGCCAGTCCCTTTCGATATTTTGATGAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTCAGCTTAGGAATTACTGCCAGTCCCTTTCGATATTTTGATGAT  844

seq1  ATGCCAATTAACTAACGCCTTTGTGCTTGAGGTACCAAGGGAAATGGTTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAATTAACTAACGCCTTTGTGCTTGAGGTACCAAGGGAAATGGTTT  894

seq1  CCCTTTCTTCCTCCATTATATGAAACATTCACTAAACAACTAGCTGTTTC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTCTTCCTCCATTATATGAAACATTCACTAAACAACTAGCTGTTTC  944

seq1  CCTGTACAGTGTGCAAAAGGATGGAGGATAAAATACTGTTCTTGGACTAG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACAGTGTGCAAAAGGATGGAGGATAAAATACTGTTCTTGGACTAG  994

seq1  GAACTGATAAAGTTTAACAAAGCTCTAGCTCCAATATAAGGATCTAGTTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGATAAAGTTTAACAAAGCTCTAGCTCCAATATAAGGATCTAGTTA  1044

seq1  GTGTATATCTTGATTAAAAAGTTTACGGAAGCATTAAGTATGCACGTGCC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATCTTGATTAAAAAGTTTACGGAAGCATTAAGTATGCACGTGCC  1094

seq1  TTACTAAAATGAACTACACATTTTTCTAAAGCCCAGGCAAGACATTGTAT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAATGAACTACACATTTTTCTAAAGCCCAGGCAAGACATTGTAT  1144

seq1  AGGAGAATTC  1153
      ||||||||||
seq2  AGGAGAATTC  1154

seq1: chr3_94662894_94663346
seq2: B6Ng01-110P24.g_73_526

seq1  GAATTCACTCTGTAGACTAGACTGGTCTGGAACTCACACAGGTTTATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACTAGACTGGTCTGGAACTCACACAGGTTTATCTG  50

seq1  CCTCTTCCTTTGCCTCCCAGGTACTGGGAATAAGCCTTTTCCCATGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTTTGCCTCCCAGGTACTGGGAATAAGCCTTTTCCCATGCCTG  100

seq1  GCTGTTTTGCTTTTTAAATTAATTATTTTATGTATATTAGTGCTTTGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTGCTTTTTAAATTAATTATTTTATGTATATTAGTGCTTTGCCT  150

seq1  GCACATATGTCTGTACACCTGTGTGTGCCTGGCACCATTGTAGGTCAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATATGTCTGTACACCTGTGTGTGCCTGGCACCATTGTAGGTCAGAA  200

seq1  GAGGACAAACAGGAGTTACAGATGGTTGCAATGGGAATTGAACCCATATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACAAACAGGAGTTACAGATGGTTGCAATGGGAATTGAACCCATATC  250

seq1  CTCTACAAGAGCAACAAATGCTCTTAACTAACCTTAACCCTAATCCTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAAGAGCAACAAATGCTCTTAACTAACCTTAACCCTAATCCTAAC  300

seq1  TTTGAGCCAACTCTCTCTGTAACTCTTTGTTTTTCGACAGGGTTTCAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCCAACTCTCTCTGTAACTCTTTGTTTTTCGACAGGGTTTCAAAT  350

seq1  AGCTCAGGCGAGCCTTCAACTTCCTATTTAGCTGAGGCTGGCCTTATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGGCGAGCCTTCAACTTCCTATTTAGCTGAGGCTGGCCTTATCTC  400

seq1  TTAAAGATTTATTTATTTA-TTATATGAGTACACCGTAGACATTTACAGA  449
      ||||||||||||||||||| ||||||||||||||||||||||||||| ||
seq2  TTAAAGATTTATTTATTTATTTATATGAGTACACCGTAGACATTTACTGA  450

seq1  CACA  453
      ||||
seq2  CACA  454