BAC Information

Click to search

BAC

Clone NameB6Ng01-111B22
ChromosomeX (Build37)3 (Build37)
Map Location 69,833,390 - 69,834,16941,059,570 - 41,059,737
singlet/doubletsingletsinglet
Overlap geneGabra3
Upstream geneLOC100040549, Gpr50, LOC654357, 2610030H06Rik, Gm1141, Prrg3, Fate1, Cnga2, Magea4, Gabre, Magea10
Downstream geneGabrq, Magea9, Cetn2, Nsdhl, Zfp185, Pnma5, LOC628237, Pnma3, Xlr4a, Xlr3a, Xlr5d, MGC106740, DXBay18, LOC627081, 4930408F14Rik, EG574437, Xlr4b, F8a, Xlr4c, Xlr3b, Xlr5c, EG434795, EG667187, LOC630169, Zfp275, Gm369, Zfp92, Trex2, Uchl5ip, Bgn, Atp2b3, LOC732481
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111B22.bB6Ng01-111B22.g
ACCDH917553DH917554
length848902
definitionDH917553|Mus musculus domesticus DNA, BAC clone: B6Ng01-111B22, 5' end.DH917554|Mus musculus domesticus DNA, BAC clone: B6Ng01-111B22, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,833,390 - 69,834,169)(41,059,570 - 41,059,737)
sequence
gaattctttctcaaacctgaaataggaatgaattaacactaactataaaa
actcaattgccaaaatagactacattaaaaactagaacattgttcttgaa
aagatacaggagtccaaaggagcactaagaaatatcagtacaaagtaaat
gaggaaaaagaagaaaatacactaaagaattggtaaagcatgtttgccta
gtatgtgatacaagctcttgccatacatactgagtaccacaaaaataatt
acttgaaaatgcactcctggggctggtgagatggctcagggggtaagagc
acccgactgctcttccaaaggtccgaagttcaaatcccagcaaccacatg
gtggctcacaaccacctgtaacagagatctgatgccctcttctggtgcgt
ctgaagacagctacagtgtacttacatataataaataaataaatcttaaa
aaaaaaaaaaaaatctaaccttaaaaaaaaaaaaaaaaaaaaaaaaaaaa
aaaagaaaatgcactcctaaaaacagttatttattattattattattatt
attattattatgtatttatttcatttacatttccaatgctatcccaaaag
tcccccacaccctccaacactcactcccccacccgcccattcccacctct
tggccctggtgttcccctgtactgaggcatataaagtttgcatgaccaat
ggggccctttctttccactgatgggcggactaggccatcttctgatacat
atgcagctagaagtcaaagagcttctggggggctggtagttcgataatgt
tggtgctccctctagaggtgggaggaagcccctagctctcggggtact
gaattctttgtttagctctgagccccatcttttaagggggttatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagcccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgatggtgttgttttctaatgtttcttctgcccctgaga
ttctctcttctatctcttgtattctgttggtgatgcttgcatctatgact
cccgatctctttcctaggttttctaactccaggattgtctccctttgtga
tttctttattgtttctatttccattttcagatccttgatagttttgttca
tttccttctcctgtttgattgtgttttcctgtaattctttaagggatctt
tgtgtttcctctttaagtgcttctagctgtttacctatgttcgcctgtat
ttctttaagggaattatttatgttcttcttaacatcttgcatttctggtg
tgatggtgtatccaggacttgctatggtgggagaattgggttctgatgat
gccaagtaaacttggtttctgttgcttatgttcttatgcttgcctcttgc
catctgattatctctagaggtacctgcccttgctatatctgactggagtc
tatccttcctgtaatgctagttgagtcagtactcctcagagcccagctgt
cttcgtgatcttgtgattcctggatcctgtgatcctgagatgctgggtgt
gtaagagtttctgggagtcaagctgcctctgaaaccctgagatcctggtg
tgaccaagctcctgtaatcccatgatcctgtgattctgtgatcctgtgat
ctgggtgtgctagagctcctgggagtggagctcctcaggggctatgggac
tg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_69833390_69834169
seq2: B6Ng01-111B22.b_49_896

seq1  GAATTCTTTCTCAAACCTGAAATAGGAATGAATTAACACTAACTATAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCAAACCTGAAATAGGAATGAATTAACACTAACTATAAAA  50

seq1  ACTCAATTGCCAAAATAGACTACATTAAAAACTAGAACATTGTTCTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAATTGCCAAAATAGACTACATTAAAAACTAGAACATTGTTCTTGAA  100

seq1  AAGATACAGGAGTCCAAAGGAGCACTAAGAAATATCAGTACAAAGTAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACAGGAGTCCAAAGGAGCACTAAGAAATATCAGTACAAAGTAAAT  150

seq1  GAGGAAAAAGAAGAAAATACACTAAAGAATTGGTAAAGCATGTTTGCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAAAGAAGAAAATACACTAAAGAATTGGTAAAGCATGTTTGCCTA  200

seq1  GTATGTGATACAAGCTCTTGCCATACATACTGAGTACCACAAAAATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGATACAAGCTCTTGCCATACATACTGAGTACCACAAAAATAATT  250

seq1  ACTTGAAAATGCACTCCTGGGGCTGGTGAGATGGCTCAGGGGGTAAGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAAAATGCACTCCTGGGGCTGGTGAGATGGCTCAGGGGGTAAGAGC  300

seq1  ACCCGACTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGACTGCTCTTCCAAAGGTCCGAAGTTCAAATCCCAGCAACCACATG  350

seq1  GTGGCTCACAACCACCTGTAACAGAGATCTGATGCCCTCTTCTGGTGCGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCACAACCACCTGTAACAGAGATCTGATGCCCTCTTCTGGTGCGT  400

seq1  CTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACAGCTACAGTGTACTTACATATAATAAATAAATAAATCTTAAA  450

seq1  AAAAAAAAAAAAATCTAACCTT-AAAAAAAAAAAAAAAAAAAAAAAAAAA  499
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAATCTAACCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA  500

seq1  AAAAGAAAATGCACTCCTAAAAACAGTTATTTATTATTATTATTATTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAATGCACTCCTAAAAACAGTTATTTATTATTATTATTATTATT  550

seq1  ATTATTATTATGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATGTATTTATTTCATTTACATTTCCAATGCTATCCCAAAAG  600

seq1  TCCCCCACACCCTCCAACACTCACTCCCCCACCCGCCCATTCCCACCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCACACCCTCCAACACTCACTCCCCCACCCGCCCATTCCCACCTCT  650

seq1  TGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAGGTCTGCACGACCAAT  699
      |||||||||||||||||||||||||||||||||| || |||| |||||||
seq2  TGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTTGCATGACCAAT  700

seq1  GGG--CCTCTCCTTCCACTGACAGGC-AACCAGGCCATCTTCTGATACAT  746
      |||  ||| || |||||||||  |||  || |||||||||||||||||||
seq2  GGGGCCCTTTCTTTCCACTGATGGGCGGACTAGGCCATCTTCTGATACAT  750

seq1  ATGCAGCTAG-AGAC-ACGAGC-TCTAGGGG---GGTACT----------  780
      |||||||||| || | | |||| ||| ||||   |||| |          
seq2  ATGCAGCTAGAAGTCAAAGAGCTTCTGGGGGGCTGGTAGTTCGATAATGT  800

seq1  ------------------------------------------------  780
                                                      
seq2  TGGTGCTCCCTCTAGAGGTGGGAGGAAGCCCCTAGCTCTCGGGGTACT  848

seq1: chr3_41059570_41059737
seq2: B6Ng01-111B22.g_68_236 (reverse)

seq1  ACACCGTCAATAAGACAAAAAGG-CACCAACAGATTGGGAAAGGATCTTT  49
      ||||| ||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACACCATCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTT  50

seq1  ACCTATCCTAAATCAGATAGGGGACTAATATCCAATATATATCAAGAACT  99
      ||||||| ||||||||||||||| |||||||||||||||||| |||||||
seq2  ACCTATCTTAAATCAGATAGGGGGCTAATATCCAATATATATAAAGAACT  100

seq1  CAAGAAGGTGGATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCT  149
      ||||| |||||| ||||||||||||||||||||| |||||| ||||||||
seq2  CAAGAGGGTGGACTCCAGAAAATCAAATAACCCCCTTAAAAGATGGGGCT  150

seq1  CAGAGCTAAACAAAGAATT  168
      |||||||||||||||||||
seq2  CAGAGCTAAACAAAGAATT  169