BAC Information

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BAC

Clone NameB6Ng01-111D09
Chromosome3 (Build37)
Map Location 72,594,936 - 72,690,376
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3, Bche
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111D09.bB6Ng01-111D09.g
ACCDH917619DH917620
length1,1181,211
definitionDH917619|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D09, 5' end.DH917620|Mus musculus domesticus DNA, BAC clone: B6Ng01-111D09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,689,367 - 72,690,376)(72,594,936 - 72,596,183)
sequence
gaattcttcccctgagcctatgtatttgagcctcttctcctctttaattc
tcttcgtttcggtgtatatgtgttttatgtaggggttcttgaccactagg
acttgagctttgtacaagcagataagacttgatacatttgcattcctcta
cgtgctgactgtcagttgaaccagcaccatttgttgaaaatgttgtcttg
gtttagcactcttgtcaaagatcaagtgaccatgggtgtgtgtgtccatt
tctgggtcctcaattctattccattgatattcctgcctgtccagacactc
attcatgttgtttttgagtttaaacattttaagatagctacagtaatcag
caccatgactggaattaaaaggatagacaagttagtggaacagaatacaa
aattatcacagaaatctgaaaatagtagaaaagcaagttggataatattt
ttattttctgttgtttataaaacaaacctgtaactttaattatgacttgt
tttatctaacatgttacctaaataatcattatttcttcggaaaagaattg
ggaaaatattttaaagctttaagaataatttttcctttatttaaaataga
ttttttcttatatagtataaactgatttactgacaaataaaacataataa
tatgaagcaaagctacattactagagttccaacccaacaggaggaacaga
gtcccaggaatagcccccaaaatcagagactcactcattctcaaagtcaa
aagtcaaataaaattactaaactaatagctattatatattcacagaggac
ctggtctagacccacgtaggccttgtgcttgctgcttcaatttctgtaag
ttcatgaatgccttgcttagtttgttcagagggccttcttctcatggtga
ccttcacaccctcttgctcttacaaacattttgcctcttctgccagattc
cctgaaggagtgtcttgatagaaaacctgtaatttcgactttctctgcat
aatgtctggctagaaggtctctgcatttgttctcatgccctccaagagaa
gcaattctgatgataatggataaaaactttgatttgtgaatgtagccgaa
ataaaattaagaaatctt
gaattctttgctttctgcttcctgttacaacttcatcaaaaatgtattgc
acgtaaactcttatgtagggtagaacacgtgatcctaactggaaatatct
ataggttacatttatgaaatccctacattaaatgagaaaaaatatgttct
aaaactccattctaatcaatggaaaacagaacagtatctgtagttttgtt
gtgggttgattttctccttacgaatttctccacttccattgctaaaatgt
ttccaacacttagaccacattaaaattaatggaaggatagaaaaatgaaa
tctgagaaaaaaagaggcttctttatttcatcctattagataacagtgag
aggaaaaaaagacagttctcttttatcctactacatatcgttagtgaaca
agccatagaatttagtatagtgccttagccttctttgaaaacaatattgt
tcctgtcacatctgatgagtagaaggggcttgctgccttttctcacaagc
aagcaagccaacacatgaatgaagaaattacgtatagtagactgtgtaga
tacagtgggttttgaatacacatagagcagtagaacccaactttcttctg
tcagtaatgtgtctaacccatgtgacttggctcttaggtagcgtcactgt
ttcagtgatcaatgtctgaaccttctaaacttgctttttgattcataaag
aaaatcactatcagtcatggcagccttaagcaggagaggaggagccctaa
ttaaagcagggtaagaaacagctcttggaaatggaattgagctaaaataa
cactattgctagaaccacataggcttatctctcagctccatttgggtctg
atcttccctgtctgcttagtctctttctccttttcaagaattctttttcc
cttctggtaccaaattccataatagaattgaagtgtcccatatacaattc
catatcccaaatcgatactccccaaatggaccaatatatatcagtccata
tctgcacagtttgataatggacatataaagtagatgatgagctcattatt
atctcactggggacccagcactggccagacacgctaagagaggaggaatc
gctcttacttactgagaaggaacctacttggaatttaataaaatctttct
atgaaataaatttcctctagggctcaccagaagagaatacgtttgtcttg
cagatacctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72689367_72690376
seq2: B6Ng01-111D09.b_157_1166 (reverse)

seq1  AAGATGATTCTTAATGTTA-TTCGGCTACACTCACAGATCAAAG-TTTTA  48
      |||||  |||||||| ||| |||||||||| ||||| ||||||| |||||
seq2  AAGAT--TTCTTAATTTTATTTCGGCTACATTCACAAATCAAAGTTTTTA  48

seq1  TCCAATTATCATCAGAATGGCTTCCTCTGGAGGGCATGAGAACAAATGCA  98
      ||| |||||||||||||| |||||   |||||||||||||||||||||||
seq2  TCC-ATTATCATCAGAATTGCTTCTCTTGGAGGGCATGAGAACAAATGCA  97

seq1  GAGACC-TCTAGCCAGACATTATGCAAGAGAAAGTCGAAATTACAGG-TC  146
      |||||| |||||||||||||||||| ||||||||||||||||||||| | 
seq2  GAGACCTTCTAGCCAGACATTATGC-AGAGAAAGTCGAAATTACAGGTTT  146

seq1  TCTATCAAGACACTCCCTCAGGGAATCTGGCAGAAGAGGCAAAATGTTTG  196
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCTATCAAGACACTCCTTCAGGGAATCTGGCAGAAGAGGCAAAATGTTTG  196

seq1  TAAGAGCAAGAGGGTGTGAAGGTCACCATGAGAAGAAGGCCCTCTGAACA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAAGAGGGTGTGAAGGTCACCATGAGAAGAAGGCCCTCTGAACA  246

seq1  AACTAAGCAAGGCATTCATGAACTTACAGAAATTGAAGCAGCAAGCACAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAGCAAGGCATTCATGAACTTACAGAAATTGAAGCAGCAAGCACAA  296

seq1  GGCCTACGTGGGTCTAGACCAGGTCCTCTGTGAATATATAATAGCTATTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTACGTGGGTCTAGACCAGGTCCTCTGTGAATATATAATAGCTATTA  346

seq1  GTTTAGTAATTTTATTTGACTTTTGACTTTGAGAATGAGTGAGTCTCTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTAATTTTATTTGACTTTTGACTTTGAGAATGAGTGAGTCTCTGA  396

seq1  TTTTGGGGGCTATTCCTGGGACTCTGTTCCTCCTGTTGGGTTGGAACTCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGGGGCTATTCCTGGGACTCTGTTCCTCCTGTTGGGTTGGAACTCT  446

seq1  AGTAATGTAGCTTTGCTTCATATTATTATGTTTTATTTGTCAGTAAATCA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGTAGCTTTGCTTCATATTATTATGTTTTATTTGTCAGTAAATCA  496

seq1  GTTTATACTATATAAGAAAAAATCTATTTTAAATAAAGGAAAAATTATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATACTATATAAGAAAAAATCTATTTTAAATAAAGGAAAAATTATTC  546

seq1  TTAAAGCTTTAAAATATTTTCCCAATTCTTTTCCGAAGAAATAATGATTA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCTTTAAAATATTTTCCCAATTCTTTTCCGAAGAAATAATGATTA  596

seq1  TTTAGGTAACATGTTAGATAAAACAAGTCATAATTAAAGTTACAGGTTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTAACATGTTAGATAAAACAAGTCATAATTAAAGTTACAGGTTTG  646

seq1  TTTTATAAACAACAGAAAATAAAAATATTATCCAACTTGCTTTTCTACTA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAAACAACAGAAAATAAAAATATTATCCAACTTGCTTTTCTACTA  696

seq1  TTTTCAGATTTCTGTGATAATTTTGTATTCTGTTCCACTAACTTGTCTAT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGATTTCTGTGATAATTTTGTATTCTGTTCCACTAACTTGTCTAT  746

seq1  CCTTTTAATTCCAGTCATGGTGCTGATTACTGTAGCTATCTTAAAATGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAATTCCAGTCATGGTGCTGATTACTGTAGCTATCTTAAAATGTT  796

seq1  TAAACTCAAAAACAACATGAATGAGTGTCTGGACAGGCAGGAATATCAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCAAAAACAACATGAATGAGTGTCTGGACAGGCAGGAATATCAAT  846

seq1  GGAATAGAATTGAGGACCCAGAAATGGACACACACACCCATGGTCACTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGAATTGAGGACCCAGAAATGGACACACACACCCATGGTCACTTG  896

seq1  ATCTTTGACAAGAGTGCTAAACCAAGACAACATTTTCAACAAATGGTGCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGACAAGAGTGCTAAACCAAGACAACATTTTCAACAAATGGTGCT  946

seq1  GGTTCAACTGACAGTCAGCACGTAGAGGAATGCAAATGTATCAAGTCTTA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCAACTGACAGTCAGCACGTAGAGGAATGCAAATGTATCAAGTCTTA  996

seq1  TCTGCTTGTACAAA  1010
      ||||||||||||||
seq2  TCTGCTTGTACAAA  1010

seq1: chr3_72594936_72596183
seq2: B6Ng01-111D09.g_69_1279

seq1  GAATTCTTTGCTTTCTGCTTCCTGTTACAACTTCATCAAAAATGTATTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCTTTCTGCTTCCTGTTACAACTTCATCAAAAATGTATTGC  50

seq1  ACGTAAACTCTTATGTAGGGTAGAACACGTGATCCTAACTGGAAATATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTAAACTCTTATGTAGGGTAGAACACGTGATCCTAACTGGAAATATCT  100

seq1  ATAGGTTACATTTATGAAATCCCTACATTAAATGAGAAAAAATATGTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTTACATTTATGAAATCCCTACATTAAATGAGAAAAAATATGTTCT  150

seq1  AAAACTCCATTCTAATCAATGGAAAACAGAACAGTATCTGTAGTTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTCCATTCTAATCAATGGAAAACAGAACAGTATCTGTAGTTTTGTT  200

seq1  GTGGGTTGATTTTCTCCTTACGAATTTCTCCACTTCCATTGCTAAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTGATTTTCTCCTTACGAATTTCTCCACTTCCATTGCTAAAATGT  250

seq1  TTCCAACACTTAGACCACATTAAAATTAATGGAAGGATAGAAAAATGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACACTTAGACCACATTAAAATTAATGGAAGGATAGAAAAATGAAA  300

seq1  TCTGAGAAAAAAAGAGGCTTCTTTATTTCATCCTATTAGATAACAGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAAAAAAAGAGGCTTCTTTATTTCATCCTATTAGATAACAGTGAG  350

seq1  AGGAAAAAAAGACAGTTCTCTTTTATCCTACTACATATCGTTAGTGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAGACAGTTCTCTTTTATCCTACTACATATCGTTAGTGAACA  400

seq1  AGCCATAGAATTTAGTATAGTGCCTTAGCCTTCTTTGAAAACAATATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATAGAATTTAGTATAGTGCCTTAGCCTTCTTTGAAAACAATATTGT  450

seq1  TCCTGTCACATCTGATGAGTAGAAGGGGCTTGCTGCCTTTTCTCACAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCACATCTGATGAGTAGAAGGGGCTTGCTGCCTTTTCTCACAAGC  500

seq1  AAGCAAGCCAACACATGAATGAAGAAATTACGTATAGTAGACTGTGTAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGCCAACACATGAATGAAGAAATTACGTATAGTAGACTGTGTAGA  550

seq1  TACAGTGGGTTTTGAATACACATAGAGCAGTAGAACCCAACTTTCTTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGGGTTTTGAATACACATAGAGCAGTAGAACCCAACTTTCTTCTG  600

seq1  TCAGTAATGTGTCTAACCCATGTGACTTGGCTCTTAGGTAGCGTCACTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATGTGTCTAACCCATGTGACTTGGCTCTTAGGTAGCGTCACTGT  650

seq1  TTCAGTGATCAATGTCTGAACCTTCTAAACTTGCTTTTTGATTCATAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGATCAATGTCTGAACCTTCTAAACTTGCTTTTTGATTCATAAAG  700

seq1  AAAATCACTATCAGTCATGGCAGCCTTAAGCAGGAGAGGAGGAGCCCTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACTATCAGTCATGGCAGCCTTAAGCAGGAGAGGAGGAGCCCTAA  750

seq1  TTAAAGCAGGGTAAGAAACAGCTCTTGGAAATGGAATTGAGCTAAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCAGGGTAAGAAACAGCTCTTGGAAATGGAATTGAGCTAAAATAA  800

seq1  CACTATTGCTAGAACCACATAGGCTTATCTCTCAGCTCCATTTGGGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATTGCTAGAACCACATAGGCTTATCTCTCAGCTCCATTTGGGTCTG  850

seq1  ATCTTCCCTGTCTGCTTAGTCTCTTTCTCCTTTTCAAGAATTCTTTTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCTGTCTGCTTAGTCTCTTTCTCCTTTTCAAGAATTCTTTTTCC  900

seq1  CTTCTGGTACCAAAATTCCATAATAGAATTGAAGTGTCCCATATACAAAT  950
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  CTTCTGGTACC-AAATTCCATAATAGAATTGAAGTGTCCCATATAC-AAT  948

seq1  TCCATATCCCCAAATCGATACTCCCCAAATTGGACCAAATATATATCAGT  1000
      ||||||| ||||||||||||||||||||| |||||| |||||||||||||
seq2  TCCATAT-CCCAAATCGATACTCCCCAAA-TGGACC-AATATATATCAGT  995

seq1  CCATATCTGCACAGTTTGAATTAATGGACATATTAAAAGTAGATGATAGA  1050
      |||||||||||||||||||  ||||||||||||  |||||||||||| ||
seq2  CCATATCTGCACAGTTTGA--TAATGGACATAT--AAAGTAGATGAT-GA  1040

seq1  GCTCATTATTATCTCACTGGGGACCCAGGCAACTGCACAGACAACAGCAA  1100
      ||||||||||||||||||||||||||||   ||||  ||||||   ||  
seq2  GCTCATTATTATCTCACTGGGGACCCAG--CACTGGCCAGACA--CGC-T  1085

seq1  AAGAGAAGAAGGAGAAAAACAGCCTCTACCTTACTGAAGAAGGAA-CTAC  1149
      |||||    ||||| ||      ||||  ||||||| |||||||| ||||
seq2  AAGAG----AGGAGGAA---TCGCTCTTACTTACTG-AGAAGGAACCTAC  1127

seq1  TATGAAATTTTATATAAAAAAATCATTCTATGAAAATAAAAATATTTCTT  1199
      | || ||||     ||| |||||| ||||||| ||||||    ||||| |
seq2  T-TGGAATT-----TAATAAAATCTTTCTATG-AAATAA----ATTTCCT  1166

seq1  CATAGGGCTCACCAGAGAAGAATACTGTTTGCTCTTGCAGAGAACCTGG  1248
      | ||||||||||||||  ||||||| ||||| |||||||||  ||||||
seq2  C-TAGGGCTCACCAGAAGAGAATAC-GTTTG-TCTTGCAGA-TACCTGG  1211