BAC Information

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BAC

Clone NameB6Ng01-111H07
Chromosome3 (Build37)
Map Location 13,039,017 - 13,158,771
singlet/doubletdoublet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033, LOC668037
Downstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111H07.bB6Ng01-111H07.g
ACCDH917796DH917797
length1,132942
definitionDH917796|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H07, 5' end.DH917797|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,157,620 - 13,158,771)(13,039,017 - 13,039,866)
sequence
gaattctatgatttgtaactttgtgaaattcaatattgctctctaccatg
gaagacaaagtttctcatattttgtttccttgaattgaaaagaaaattaa
ttatgaccctaaactaaaaataatagacatatctgcattgtgtttatcca
gttcactaatgtgaagcatgtgtactctaaatttttttcactgcattata
ccttatattttctaaactcagtagcacttaactatttactttactttcat
ctctgtgaaaacatgatataaaaaaaacttaccaccttacatagaaggag
cctcacagtcttgaaggggtgatcttagaaacccagctgaggatcctgtg
ggctgcttctcacacagctcaaaggtatgagctctgctatcttaacttga
tagtttgctgttgctgattcacctgcccccaatcattctttacttctcat
cttgaattatcatattttccaccactccacaccatcctgtaacacaagga
atatttaaattttgagataaattttccagcatttgtaaaggaaatggacc
tatagaaacatagtgtttccaggtacaatgtagataacgaatgcactata
aaagaaagctaaggactttattttcaagatgttctctcttgttctccccc
tgtttctttgtaggagacgttaaatatattgaagtcatctcctgagctgt
ccttgtctcttcctgtgaagccaggagcgttgtcagataacttcattaag
ttatgctggtgtgaagccttgaacatgacacaatgccatcatgttggttg
ctgaggagtcatgacagattctgatgacaaggagcaatcagtgtgtctct
gttgtataagacagcaattctcacattcagagaggcatctatattctttc
tcaaagaagctatctttaaaagatcacgttttaattgggttggactttat
tcctttaatctgtttgatcagcctatgatgctttcaataacattatgtta
tttctcatttgtaaattctttctcagataagctgttagtaaatttcaaca
atagtatgaccctttttctgtaaagaatcattaattaactcaaatgtgtg
aactaattgtcatgcttactgaaatcagtctt
gaattcacctagcatgtagaccagggaataacatcggtgatcttaaccct
ccctcctcttctccaattccaatttcttttttctttctttctttcttcct
tccttccttccttccttccttccttcctttctttctttctttctttcttt
ctttctttctttctttctttctttctttttttattggtttttcaagacag
ggtttctctgtatatccctggctgtcctggaactcactctgtaaaacagg
ctggcctcgaactcagaaatccacctgcttttgcctcccaagtgctggga
atgaaggtgtgtgccatgactgcccagccaattccaatttctaaggaagc
tctatattgagagttttatctgacaccagtcagtatggccaagatcatta
taacaaatgacaacccatactaaggagtacatagaataagagaaacaatc
atccattgctgatgagactgcaaacttgtccacccattaagaaaacagtg
tgggagttcctcaggaagctgggaataaacctaccttgaaagccataact
aactcttgggcatataaccaatagatgtttaattgtactgcagagacctt
tgatcaactatgtttgttgatgctcttttcataagacatagaatttggaa
acagcctagatatccaatttggatgaatgcataaaaatgtggttcattta
cacaatgaaatattatgcagccattagaaaatggaatcatcaaatttgca
tttgaagggttagaggaagaaaaagtcatcctgagtaaagaaacttagac
tcaaaagggcaaatattatgcatatttgggtgttaggtgtaaaagcttct
gttaaaaaggctataatctatattgttgttcttcctagagagttgcagac
cccttcaactctttgtgtactttctctagctcctccatttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_13157620_13158771
seq2: B6Ng01-111H07.b_38_1169 (reverse)

seq1  AAGACTGAATTTTTCAAGTTATGCATGACAATTAGTTTCACACATTTTGA  50
      ||||||||   |||||   || ||||||||||||| |||||||| |||||
seq2  AAGACTGA---TTTCA--GTAAGCATGACAATTAG-TTCACACA-TTTGA  43

seq1  GTTTTTATTTAATGGATTTCTTTTACAGAAAAAGGGTCATACTATTGTTT  100
      |   ||| ||||| ||||   |||||||||||||||||||||||||||| 
seq2  G---TTAATTAAT-GATT--CTTTACAGAAAAAGGGTCATACTATTGTTG  87

seq1  AAAATTTTACCTAAACAGCTTTATCTGAGAAAGAATTTTACAAATGAGAA  150
      |||  |||||   |||||| ||||||||||||||| ||||||||||||||
seq2  AAA--TTTAC--TAACAGC-TTATCTGAGAAAGAA-TTTACAAATGAGAA  131

seq1  ATAACATAATGTTATTGAAAGCATCATAGGCTGATCAAACAGATTTAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATAACATAATGTTATTGAAAGCATCATAGGCTGATCAAACAGA-TTAAAG  180

seq1  GAATAAAGTCCAATCCAATTAAAACGTGATCTTTTAAAGATAGCTTCTTT  250
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGTCCAACCCAATTAAAACGTGATCTTTTAAAGATAGCTTCTTT  230

seq1  GAGAAAGAATATAGATGCCTCTCTGAATGTGAGAATTGCTGTCTTATACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGAATATAGATGCCTCTCTGAATGTGAGAATTGCTGTCTTATACA  280

seq1  ACAGAGACACACTGATTGCTCCTTGTCATCAGAATCTGTCATGACTCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACACACTGATTGCTCCTTGTCATCAGAATCTGTCATGACTCCTC  330

seq1  AGCAACCAACATGATGGCATTGTGTCATGTTCAAGGCTTCACACCAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACCAACATGATGGCATTGTGTCATGTTCAAGGCTTCACACCAGCAT  380

seq1  AACTTAATGAAGTTATCTGACAACGCTCCTGGCTTCACAGGAAGAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATGAAGTTATCTGACAACGCTCCTGGCTTCACAGGAAGAGACAA  430

seq1  GGACAGCTCAGGAGATGACTTCAATATATTTAACGTCTCCTACAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTCAGGAGATGACTTCAATATATTTAACGTCTCCTACAAAGAAA  480

seq1  CAGGGGGAGAACAAGAGAGAACATCTTGAAAATAAAGTCCTTAGCTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGGAGAACAAGAGAGAACATCTTGAAAATAAAGTCCTTAGCTTTCT  530

seq1  TTTATAGTGCATTCGTTATCTACATTGTACCTGGAAACACTATGTTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTGCATTCGTTATCTACATTGTACCTGGAAACACTATGTTTCTA  580

seq1  TAGGTCCATTTCCTTTACAAATGCTGGAAAATTTATCTCAAAATTTAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCCATTTCCTTTACAAATGCTGGAAAATTTATCTCAAAATTTAAAT  630

seq1  ATTCCTTGTGTTACAGGATGGTGTGGAGTGGTGGAAAATATGATAATTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGTGTTACAGGATGGTGTGGAGTGGTGGAAAATATGATAATTCA  680

seq1  AGATGAGAAGTAAAGAATGATTGGGGGCAGGTGAATCAGCAACAGCAAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGAAGTAAAGAATGATTGGGGGCAGGTGAATCAGCAACAGCAAAC  730

seq1  TATCAAGTTAAGATAGCAGAGCTCATACCTTTGAGCTGTGTGAGAAGCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGTTAAGATAGCAGAGCTCATACCTTTGAGCTGTGTGAGAAGCAG  780

seq1  CCCACAGGATCCTCAGCTGGGTTTCTAAGATCACCCCTTCAAGACTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGGATCCTCAGCTGGGTTTCTAAGATCACCCCTTCAAGACTGTGA  830

seq1  GGCTCCTTCTATGTAAGGTGGTAAGTTTTTTTTATATCATGTTTTCACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCTTCTATGTAAGGTGGTAAGTTTTTTTTATATCATGTTTTCACAG  880

seq1  AGATGAAAGTAAAGTAAATAGTTAAGTGCTACTGAGTTTAGAAAATATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAAGTAAAGTAAATAGTTAAGTGCTACTGAGTTTAGAAAATATAA  930

seq1  GGTATAATGCAGTGAAAAAAATTTAGAGTACACATGCTTCACATTAGTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAATGCAGTGAAAAAAATTTAGAGTACACATGCTTCACATTAGTGA  980

seq1  ACTGGATAAACACAATGCAGATATGTCTATTATTTTTAGTTTAGGGTCAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATAAACACAATGCAGATATGTCTATTATTTTTAGTTTAGGGTCAT  1030

seq1  AATTAATTTTCTTTTCAATTCAAGGAAACAAAATATGAGAAACTTTGTCT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTTTCTTTTCAATTCAAGGAAACAAAATATGAGAAACTTTGTCT  1080

seq1  TCCATGGTAGAGAGCAATATTGAATTTCACAAAGTTACAAATCATAGAAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGGTAGAGAGCAATATTGAATTTCACAAAGTTACAAATCATAGAAT  1130

seq1  TC  1152
      ||
seq2  TC  1132

seq1: chr3_13039017_13039866
seq2: B6Ng01-111H07.g_71_920

seq1  GAATTCACCTAGCATGTAGACCAGGGAATAACATCGGTGATCTTAACCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTAGCATGTAGACCAGGGAATAACATCGGTGATCTTAACCCT  50

seq1  CCCTCCTCTTCTCCAATTCCAATTTCTTTTTTCTTTCTTTCTTTCTTCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCTCTTCTCCAATTCCAATTTCTTTTTTCTTTCTTTCTTTCTTCCT  100

seq1  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTTCTTT  150

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTATTGGTTTTTCAAGACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCTTTTTTTATTGGTTTTTCAAGACAG  200

seq1  GGTTTCTCTGTATATCCCTGGCTGTCCTGGAACTCACTCTGTAAAACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTATATCCCTGGCTGTCCTGGAACTCACTCTGTAAAACAGG  250

seq1  CTGGCCTCGAACTCAGAAATCCACCTGCTTTTGCCTCCCAAGTGCTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCTCGAACTCAGAAATCCACCTGCTTTTGCCTCCCAAGTGCTGGGA  300

seq1  ATGAAGGTGTGTGCCATGACTGCCCAGCCAATTCCAATTTCTAAGGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTGTGTGCCATGACTGCCCAGCCAATTCCAATTTCTAAGGAAGC  350

seq1  TCTATATTGAGAGTTTTATCTGACACCAGTCAGTATGGCCAAGATCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATTGAGAGTTTTATCTGACACCAGTCAGTATGGCCAAGATCATTA  400

seq1  TAACAAATGACAACCCATACTAAGGAGTACATAGAATAAGAGAAACAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAATGACAACCCATACTAAGGAGTACATAGAATAAGAGAAACAATC  450

seq1  ATCCATTGCTGATGAGACTGCAAACTTGTCCACCCATTAAGAAAACAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTGCTGATGAGACTGCAAACTTGTCCACCCATTAAGAAAACAGTG  500

seq1  TGGGAGTTCCTCAGGAAGCTGGGAATAAACCTACCTTGAAAGCCATAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTTCCTCAGGAAGCTGGGAATAAACCTACCTTGAAAGCCATAACT  550

seq1  AACTCTTGGGCATATAACCAATAGATGTTTAATTGTACTGCAGAGACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTGGGCATATAACCAATAGATGTTTAATTGTACTGCAGAGACCTT  600

seq1  TGATCAACTATGTTTGTTGATGCTCTTTTCATAAGACATAGAATTTGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCAACTATGTTTGTTGATGCTCTTTTCATAAGACATAGAATTTGGAA  650

seq1  ACAGCCTAGATATCCAATTTGGATGAATGCATAAAAATGTGGTTCATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTAGATATCCAATTTGGATGAATGCATAAAAATGTGGTTCATTTA  700

seq1  CACAATGAAATATTATGCAGCCATTAGAAAATGGAATCATCAAATTTGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGAAATATTATGCAGCCATTAGAAAATGGAATCATCAAATTTGCA  750

seq1  TTTGAAGGGTTAGAGGAAGAAAAAGTCATCCTGAGTAAAGAAACTTAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGGGTTAGAGGAAGAAAAAGTCATCCTGAGTAAAGAAACTTAGAC  800

seq1  TCAAAAGGGCAAATATTATGCATATTTGGGTGTTAGGTGTAAAAGCTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGGCAAATATTATGCATATTTGGGTGTTAGGTGTAAAAGCTTCT  850