BAC Information

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BAC

Clone NameB6Ng01-111I17
Chromosome3 (Build37)
Map Location 18,957,621 - 19,093,992
singlet/doubletdoublet
Overlap geneArmc1, Mtfr1
Upstream geneCyp7b1, LOC622921, LOC100040153
Downstream genePde7a, Dnajc5b, EG620290, Trim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111I17.bB6Ng01-111I17.g
ACCDH917860DH917861
length1,1111,113
definitionDH917860|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I17, 5' end.DH917861|Mus musculus domesticus DNA, BAC clone: B6Ng01-111I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,092,872 - 19,093,992)(18,957,621 - 18,958,497)
sequence
gaattcaagacaagcttggattagacagggagacctacactcaaacacat
acatacaaacataaatacatatacacacatatacatatggatacatatat
atatctatatgacttttgcgtctatgagttaagtaatattcaaacaaact
ctcctctcacttagaacaagtaaattaggtggaaaagagaaaaaagaaaa
ctgccaagcagtggtaacacatgcctttaatcccagcacttgggaggcag
agggaagcggatttctgagttcaaggccagccttgtctacagagtgagtt
tcaggacagccagagttacacagagaaaccctgcctcaaaaacaaacaca
aaaaacccagaaaaaataaaactgctgacgctgaaaccatcaaagcctat
taagaacaggaaggataaccaagtcaagagctggtttagccaggcataga
agcaaattcctttaatttctgcacctctgaggtagaagcaggaggattgt
gagttcatggccatcttgggcaataattaatatatatatagatatttata
tctatctatatatagatagatataaattttaaaaaggaaataaaaaatca
aaaagttgcttctttgaagagtctattagttgtaaaaaaaatatagtgct
ctgatgaaattcattaagaaaaaaatagagaaatgaattagctttatcag
gaataaaaaaaaaaaaggataccagtacatttcctacagataacaagaga
atcatataaagaagacaattttggatgcaataaatttctgtgaaacgttt
ataaataaataagaagcccaaacactgaaacactgaaagcagttatagtg
gctacctttgattcaatctgggtaattaatacttggaagagagtcaccaa
ggtgtttttctgatatgcaagctttcttttcttaacatgggtgtctatta
catgaatgtatgctttgtgaaagatttatatatgtatgactatcaatgta
tgtataattcatgtgatgctatccatcagctgattttctccatagcactg
atacataatacacatgtaaacttagtgttcatgttgattgctaatcttgt
ccacctgaata
gaattcccctgtactggagcatataaagtttgcaagaccaatgatgggcg
actatgtcatcttctgctacatatgcagctagagactcgagctctggggg
gtactggttagttcatattgttgttcctcctatagggttgcagaaccctt
tagctccttgggtgctttctctagctcctccattgagggccctgtgttcc
atccaatagctgactgtgagcatccacgtctgtatttgccaagcactggc
ctagcctcacagggaacagctgtatcagggtcccttatctccttgtacaa
agctcaaatctaagtggatcaaaaacctccacataaaaccagagacactg
aaatgtatagaggagaaagtggggaaaagcctcgaagatatgggcacagg
ggaaaagttcctaaacagaacagcagtagcttgtgctgtaagatcaagaa
ttgacaaatgggacttcataaaattgcaaagcttctgtaaggcaaaagac
actgtcaataagacaaaaaggccaccaacagattgggaaaggatttttac
caatcctaaatctgatagggaactaatatccaatatatacaaagagctca
agaagctggactccagaaattcaaataaccccactaaaaaatggggtaca
gaactaaacgaagaattctcaactgaggaatactgaatggctgagaagca
cctttaaaaatgttcaacatccttaatcaatttcacattcttaaaatgtg
gctggcaatggacacaaagcagggcctaagcaagttctgttgaataagaa
agatgaggagcagcagcttctgggggcacgaagtttcctttgtgaaggta
aaagctgtccactatggatgggacggcgcatctggtgcatgacctgttca
aaaacggtcatgaaagttttattttgtcacctagtcgtttacatgacaaa
agccagatggaatttcatcagtgtcctttagtcatctaatgcctgattat
atatctctccctatcctctgttctggccaaaatttgtgtcccaagcagaa
caaaaaattactctccaatcctttggggatacttggagaacaaaggtctt
gaaatctttgcca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_19092872_19093992
seq2: B6Ng01-111I17.b_45_1155 (reverse)

seq1  TATTCAGGTTGACAAGATTAGCTATCATACATGAACACTTAAGTTTACAT  50
      ||||||||| |||||||||||| |||| |||||||||| |||||||||||
seq2  TATTCAGGTGGACAAGATTAGCAATCA-ACATGAACAC-TAAGTTTACAT  48

seq1  GTGTATGTATGTATCAGTGCTATGGGGAAAAATCAAGCTGGATGGGAATT  100
      |||||| |||||||||||||||||| | |||||| |||| |||||    |
seq2  GTGTAT-TATGTATCAGTGCTATGGAG-AAAATC-AGCT-GATGG---AT  91

seq1  AGCCATCACATGAATTATAACATACATTGATAAGTCATACATATATAAAT  150
      || ||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  AG-CATCACATGAATTAT-ACATACATTGAT-AGTCATACATATATAAAT  138

seq1  CTATCACAAAGCATACATTCATGTAATAGACACCCATGTTAAGAAAAGAA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACAAAGCATACATTCATGTAATAGACACCCATGTTAAGAAAAGAA  188

seq1  AGCTTGCATATCAG-AAAACACCTTGGTGACTCTCTTCCAAGTATTAATT  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGCTTGCATATCAGAAAAACACCTTGGTGACTCTCTTCCAAGTATTAATT  238

seq1  ACCCAGATTGAATCAAAGGTAGCCACTATAACTGCTTTCAGTGTTTCAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATTGAATCAAAGGTAGCCACTATAACTGCTTTCAGTGTTTCAGT  288

seq1  GTTTTGGCTTCTTATTTATTTATAAACGTTTCACAGAAATTTATTGCATC  349
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGCTTCTTATTTATTTATAAACGTTTCACAGAAATTTATTGCATC  338

seq1  CAAAATTGTCTTCTTTATATGATTCTCTTGTTATCTGTAGGAAATGTACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATTGTCTTCTTTATATGATTCTCTTGTTATCTGTAGGAAATGTACT  388

seq1  GGTATCC-TTTTTTTTTTTATTCCTGATAAAGCTAATTCATTTCTCTATT  448
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATCCTTTTTTTTTTTTATTCCTGATAAAGCTAATTCATTTCTCTATT  438

seq1  TTTTTCTTAATGAATTTCATCAGAGCACTATATTTTTTTTACAACTAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTAATGAATTTCATCAGAGCACTATATTTTTTTTACAACTAATA  488

seq1  GACTCTTCAAAGAAGCAACTTTTTGATTTTTTATTTCCTTTTTAAAATTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTCAAAGAAGCAACTTTTTGATTTTTTATTTCCTTTTTAAAATTT  538

seq1  ATATCTATCTATATATAGATAGATATAAATATCTATATATATATTAATTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTATCTATATATAGATAGATATAAATATCTATATATATATTAATTA  588

seq1  TTGCCCAAGATGGCCATGAACTCACAATCCTCCTGCTTCTACCTCAGAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAAGATGGCCATGAACTCACAATCCTCCTGCTTCTACCTCAGAGG  638

seq1  TGCAGAAATTAAAGGAATTTGCTTCTATGCCTGGCTAAACCAGCTCTTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAATTAAAGGAATTTGCTTCTATGCCTGGCTAAACCAGCTCTTGA  688

seq1  CTTGGTTATCCTTCCTGTTCTTAATAGGCTTTGATGGTTTCAGCGTCAGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTATCCTTCCTGTTCTTAATAGGCTTTGATGGTTTCAGCGTCAGC  738

seq1  AGTTTTATTTTTTCTGGGTTTTTTGTGTTTGTTTTTGAGGCAGGGTTTCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTATTTTTTCTGGGTTTTTTGTGTTTGTTTTTGAGGCAGGGTTTCT  788

seq1  CTGTGTAACTCTGGCTGTCCTGAAACTCACTCTGTAGACAAGGCTGGCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTAACTCTGGCTGTCCTGAAACTCACTCTGTAGACAAGGCTGGCCT  838

seq1  TGAACTCAGAAATCCGCTTCCCTCTGCCTCCCAAGTGCTGGGATTAAAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCAGAAATCCGCTTCCCTCTGCCTCCCAAGTGCTGGGATTAAAGG  888

seq1  CATGTGTTACCACTGCTTGGCAGTTTTCTTTTTTCTCTTTTCCACCTAAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTTACCACTGCTTGGCAGTTTTCTTTTTTCTCTTTTCCACCTAAT  938

seq1  TTACTTGTTCTAAGTGAGAGGAGAGTTTGTTTGAATATTACTTAACTCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGTTCTAAGTGAGAGGAGAGTTTGTTTGAATATTACTTAACTCAT  988

seq1  AGACGCAAAAGTCATATAGATATATATATGTATCCATATGTATATGTGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGCAAAAGTCATATAGATATATATATGTATCCATATGTATATGTGTG  1038

seq1  TATATGTATTTATGTTTGTATGTATGTGTTTGAGTGTAGGTCTCCCTGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTATTTATGTTTGTATGTATGTGTTTGAGTGTAGGTCTCCCTGTC  1088

seq1  TAATCCAAGCTTGTCTTGAATTC  1121
      |||||||||||||||||||||||
seq2  TAATCCAAGCTTGTCTTGAATTC  1111

seq1: chr3_18957621_18958497
seq2: B6Ng01-111I17.g_299_1179

seq1  TATTTGCCAAGCACTGGCCTAGCCTCACAGGGAACAGCTGTATCAGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCAAGCACTGGCCTAGCCTCACAGGGAACAGCTGTATCAGGGTC  50

seq1  CCTTATCTCCTTGTACAAAGCTCAAATCTAAGTGGATCAAAAACCTCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATCTCCTTGTACAAAGCTCAAATCTAAGTGGATCAAAAACCTCCAC  100

seq1  ATAAAACCAGAGACACTGAAATGTATAGAGGAGAAAGTGGGGAAAAGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACCAGAGACACTGAAATGTATAGAGGAGAAAGTGGGGAAAAGCCT  150

seq1  CGAAGATATGGGCACAGGGGAAAAGTTCCTAAACAGAACAGCAGTAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGATATGGGCACAGGGGAAAAGTTCCTAAACAGAACAGCAGTAGCTT  200

seq1  GTGCTGTAAGATCAAGAATTGACAAATGGGACTTCATAAAATTGCAAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGTAAGATCAAGAATTGACAAATGGGACTTCATAAAATTGCAAAGC  250

seq1  TTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCCACCAACAGA  300

seq1  TTGGGAAAGGATTTTTACCAATCCTAAATCTGATAGGGAACTAATATCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAGGATTTTTACCAATCCTAAATCTGATAGGGAACTAATATCCA  350

seq1  ATATATACAAAGAGCTCAAGAAGCTGGACTCCAGAAATTCAAATAACCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATACAAAGAGCTCAAGAAGCTGGACTCCAGAAATTCAAATAACCCC  400

seq1  ACTAAAAAATGGGGTACAGAACTAAACGAAGAATTCTCAACTGAGGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAATGGGGTACAGAACTAAACGAAGAATTCTCAACTGAGGAATA  450

seq1  CTGAATGGCTGAGAAGCACCTTTAAAAATGTTCAACATCCTTAATCAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGCTGAGAAGCACCTTTAAAAATGTTCAACATCCTTAATCAATT  500

seq1  TCACATTCTTAAAATGTGGCTGGCAATGGACACAAAGCAGGGCCTAAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTCTTAAAATGTGGCTGGCAATGGACACAAAGCAGGGCCTAAGCA  550

seq1  AGTTCTGTTGAATAAGAAAGATGAGGAGCAGCAGCTTCTGGGGGCACGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTTGAATAAGAAAGATGAGGAGCAGCAGCTTCTGGGGGCACGAA  600

seq1  GGTTTCCTTTGTGAAGGT-AAAGCTGTCCACTATGGAT-GGACGGCGGCA  648
       ||||||||||||||||| ||||||||||||||||||| ||||||| |||
seq2  -GTTTCCTTTGTGAAGGTAAAAGCTGTCCACTATGGATGGGACGGC-GCA  648

seq1  TCTGTTGCATGACCTGTTCAGAAAACGGTCA-GGAAGTTT--ATTTGTCA  695
      |||| ||||||||||||||| |||||||||| | ||||||   |||||||
seq2  TCTGGTGCATGACCTGTTCA-AAAACGGTCATGAAAGTTTTATTTTGTCA  697

seq1  CCTAGTCGTTTACAATGACAAAAG-CAGAAGGAATTTCATCA-TGTCCTT  743
      ||||||||||||| |||||||||| |||| |||||||||||| |||||||
seq2  CCTAGTCGTTTAC-ATGACAAAAGCCAGATGGAATTTCATCAGTGTCCTT  746

seq1  TAGTCATCTAAATGCCTGATTTATATATCTCTCCCTAT-CTCTGTTCTGC  792
      ||||||||| ||||||||| |||||||||||||||||| |||||||||| 
seq2  TAGTCATCT-AATGCCTGA-TTATATATCTCTCCCTATCCTCTGTTCTGG  794

seq1  CCAAAATTTGT-TCCCAAGCAGGAACAAAAAATTAC-CTCCAATCCTGTT  840
      ||||||||||| ||||||||| |||||||||||||| |||||||||| | 
seq2  CCAAAATTTGTGTCCCAAGCA-GAACAAAAAATTACTCTCCAATCCTTTG  843

seq1  GGGATACTTGGAGGAC-AAGGTCTAGAAATCCTTGCCA  877
      ||||||||||||| || ||||||| |||||| ||||||
seq2  GGGATACTTGGAGAACAAAGGTCTTGAAATCTTTGCCA  881