BAC Information

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BAC

Clone NameB6Ng01-111J24
Chromosome3 (Build37)
Map Location 55,397,368 - 55,537,422
singlet/doubletdoublet
Overlap genenone
Upstream geneB020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
Downstream geneMab21l1, 4933417G07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111J24.bB6Ng01-111J24.g
ACCDH917920DH917921
length1,0901,091
definitionDH917920|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J24, 5' end.DH917921|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,536,346 - 55,537,422)(55,397,368 - 55,398,474)
sequence
gaattctatcatagcataactagattgccagaaaaaaagcaattctcttt
tctgtctgcttgataaacattgaccagtttggatgttagaataattacat
tagcatctcacctgacagatcttcaaaagtccaaacaactttcctgacaa
tttgtaatatctaaatagcacttttaccacatttgttcaaagaaagcatg
agaactcagatctgaaattggaggaaaatgtctaaagataaaagaaagta
taagtgtgaccagttacaaaattgtcacagtgcagaaaattgcaaaagaa
gttaatattctagtttctacaaactagagtcattataacttttttgccca
gcccccattcaaaaacaaacaaacaaacaaaaaccagcaaagagaaaaat
gtaagatttttagagtttgccagagaaattggtaaacacagccaaaagat
acagcgcttacacctggagacattcatgcttcagacaaaaccaaaaccgc
tttcccggctccccttcctcggtccacaccttggagagtgcttttgcaaa
ggactccatctgcagctctgaacatttttgtaagttcaaactgctaagtg
tttcacccaccaaagtgattgaagtgcccttcgtaaggagtaatagactg
gatagaaatctggtccggtctccaccctcatgccctaccagttctgaagg
acacaggtaataaaatagaccagcttcaaagtacttgccacagtgtaaga
caatgcaaaggacacaagtggctctcttgggtgagtttataatttttaac
tagtaatgacttactgtttatgtatatttattgtgacaaaccccctggtt
ccctgttaagatccttttcttcactgtaagtcacagcaatgatttctgga
agcgcctaatttaatgatctggcatctttcgcagaaaaaccctcaaattg
gcatggtcattgtcccagaccaagggcccaaaagccggtatattttgtct
tgacctagccttggttaatctggctcccaccctcccttactggtctcatc
tttcaccttccctcctcacaaacctagggcactgacccct
gaattcccttcagccccaacctccaagcaatacaatgcatagaaggcggg
tgctctccagggtgtggctctgacacatagtggaatgccttcagctcagc
tgtcagcccaaggttccctccgattggcctcaggggcctcaagcacatta
tttaatctctctaaagctcaccagaacatctgaaattcagatgtaacggc
acccatctctgaggttaaggaccaagtaatatagtgcctgcagcatgtgt
aacctagtgagcaggtctcccgagtctttgttaagtcaccatgtggaggc
tggtgtctgcttgtgccctgcacataacagagagacccagtgtctttgtg
tcttctaaggaggattttgacatatgagaaagtgtatatttgaggtacta
cataattttaaggtgacactggcagcaaggtaacacagtaaggcgggggc
tggaagtgtgcctgccacttgacactagaactatgtcccctcaccatcct
gagaaatcttggtgtggatgttgtaccatgctcatttagttccaacactt
tggatgtcatcacgttccgacagaaggatgagagccatgctaatagagcc
ctacaaggacattagcctactcacttcacaagtgggccagcccaagacca
tgaacaaaagagggagagccaggctatgaatccaggccacatgaaaccat
agcatgtgacttgacccttctttttaaaattaagtatccattgaatggat
aaagaaaatgtaacgcatatatacaataaaatatcatttggtcccaaaga
gggaggagattctgttttgtacaccatgggatggagttggagatttttat
gtcaagttgacacaaaaaagcctataaaaggaaaatgccacataattcac
tgatgccaattgccttcagtattgcatttatgggaagaaaagtaaaaggc
tttttaccaggcctgagggaaggaaagatgagaagttagtgttcatgggt
aggattcagttatagatgaaaagagtttgggtaatgaagtctatagggca
taggccagtgtcctaaggtcaactcacccaaagggtgagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55536346_55537422
seq2: B6Ng01-111J24.b_46_1135 (reverse)

seq1  AGGGTGTCAGTGC---ATGTGTTGTGAGGAGGGAAGGTGAAAGATGAGAA  47
      |||| ||||||||   | || |||||||||||||||||||||||||||| 
seq2  AGGG-GTCAGTGCCCTAGGT-TTGTGAGGAGGGAAGGTGAAAGATGAGAC  48

seq1  CAGTAAGGGAGGGGTGGGAGCCAGATTAA-CAAGGCTAGGTC-AGACAAA  95
      |||||||||| |||||||||||||||||| |||||||||||| |||||||
seq2  CAGTAAGGGA-GGGTGGGAGCCAGATTAACCAAGGCTAGGTCAAGACAAA  97

seq1  TTATA-CGGCTTTTGGGCCC-TGGTCTGAGAACAATGA-CATGCC-ATTT  141
       |||| |||||||||||||| ||||||| | ||||||| |||||| ||||
seq2  ATATACCGGCTTTTGGGCCCTTGGTCTG-GGACAATGACCATGCCAATTT  146

seq1  GAGGG-TTTTCTGCG-AAGATGCCAGATCATTAAATTA-GCGCTT-CAGA  187
      ||||| ||||||||| |||||||||||||||||||||| |||||| ||||
seq2  GAGGGTTTTTCTGCGAAAGATGCCAGATCATTAAATTAGGCGCTTCCAGA  196

seq1  AATCATTGCTGTGAC-TACAGTGAAG-AAAGGATCTTAACAAGGAAACAG  235
      ||||||||||||||| |||||||||| |||||||||||||| |||| |||
seq2  AATCATTGCTGTGACTTACAGTGAAGAAAAGGATCTTAACAGGGAACCAG  246

seq1  GGGGTTTGTCACAAT-AATATACATAAACAGTAAGTCATTACTAGTTAAA  284
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGGTTTGTCACAATAAATATACATAAACAGTAAGTCATTACTAGTTAAA  296

seq1  AATTATAAACTCACCCAAGAGAGCCACTTGTGTCCTTTGCATTGTCTTAC  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAAACTCACCCAAGAGAGCCACTTGTGTCCTTTGCATTGTCTTAC  346

seq1  ACTGTGGCAAGTACTTTGAAGCTGGTCTATTTTATTACCTGTGTCCTTCA  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGCAAGTACTTTGAAGCTGGTCTATTTTATTACCTGTGTCCTTCA  396

seq1  GAACTGGTAGGGCATGAGGGTGGAGACCGGACCAGA-TTCTATCCAGTCT  433
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAACTGGTAGGGCATGAGGGTGGAGACCGGACCAGATTTCTATCCAGTCT  446

seq1  ATTACTCCTTACGAAGGGCACTTCAATCACTTTGGTGGGTGAAACACTTA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTCCTTACGAAGGGCACTTCAATCACTTTGGTGGGTGAAACACTTA  496

seq1  GCAGTTTGAACTTACAAAAATGTTCAGAGCTGCAGATGGAGTCCTTTGCA  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTTGAACTTACAAAAATGTTCAGAGCTGCAGATGGAGTCCTTTGCA  546

seq1  AAAGCACTCTCCAAGGTGTGGACCGAGGAAGGGGAGCCGGGAAAGCGGTT  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACTCTCCAAGGTGTGGACCGAGGAAGGGGAGCCGGGAAAGCGGTT  596

seq1  TTGGTTTTGTCTGAAGCATGAATGTCTCCAGGTGTAAGCGCTGTATCTTT  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTGTCTGAAGCATGAATGTCTCCAGGTGTAAGCGCTGTATCTTT  646

seq1  TGGCTGTGTTTACCAATTTCTCTGGCAAACTCTAAAAATCTTACATTTTT  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGTTTACCAATTTCTCTGGCAAACTCTAAAAATCTTACATTTTT  696

seq1  CTCTTTGCTGGTTTTTGTTTGTTTGTTTGTTTTTGAATGGGGGCTGGGCA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTGCTGGTTTTTGTTTGTTTGTTTGTTTTTGAATGGGGGCTGGGCA  746

seq1  AAAAAGTTATAATGACTCTAGTTTGTAGAAACTAGAATATTAACTTCTTT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTTATAATGACTCTAGTTTGTAGAAACTAGAATATTAACTTCTTT  796

seq1  TGCAATTTTCTGCACTGTGACAATTTTGTAACTGGTCACACTTATACTTT  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTTTCTGCACTGTGACAATTTTGTAACTGGTCACACTTATACTTT  846

seq1  CTTTTATCTTTAGACATTTTCCTCCAATTTCAGATCTGAGTTCTCATGCT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATCTTTAGACATTTTCCTCCAATTTCAGATCTGAGTTCTCATGCT  896

seq1  TTCTTTGAACAAATGTGGTAAAAGTGCTATTTAGATATTACAAATTGTCA  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGAACAAATGTGGTAAAAGTGCTATTTAGATATTACAAATTGTCA  946

seq1  GGAAAGTTGTTTGGACTTTTGAAGATCTGTCAGGTGAGATGCTAATGTAA  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTGTTTGGACTTTTGAAGATCTGTCAGGTGAGATGCTAATGTAA  996

seq1  TTATTCTAACATCCAAACTGGTCAATGTTTATCAAGCAGACAGAAAAGAG  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTAACATCCAAACTGGTCAATGTTTATCAAGCAGACAGAAAAGAG  1046

seq1  AATTGCTTTTTTTCTGGCAATCTAGTTATGCTATGATAGAATTC  1077
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTTTTTTCTGGCAATCTAGTTATGCTATGATAGAATTC  1090

seq1: chr3_55397368_55398474
seq2: B6Ng01-111J24.g_70_1160

seq1  GAATTCCCTTCAGCCCCAACCTCCAAGCAATACAATGCATAGAAGGCGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCAGCCCCAACCTCCAAGCAATACAATGCATAGAAGGCGGG  50

seq1  TGCTCTCCAGGGTGTGGCTCTGACACATAGTGGAATGCCTTCAGCTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCCAGGGTGTGGCTCTGACACATAGTGGAATGCCTTCAGCTCAGC  100

seq1  TGTCAGCCCAAGGTTCCCTCCGATTGGCCTCAGGGGCCTCAAGCACATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCCCAAGGTTCCCTCCGATTGGCCTCAGGGGCCTCAAGCACATTA  150

seq1  TTTAATCTCTCTAAAGCTCACCAGAACATCTGAAATTCAGATGTAACGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCTCTCTAAAGCTCACCAGAACATCTGAAATTCAGATGTAACGGC  200

seq1  ACCCATCTCTGAGGTTAAGGACCAAGTAATATAGTGCCTGCAGCATGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATCTCTGAGGTTAAGGACCAAGTAATATAGTGCCTGCAGCATGTGT  250

seq1  AACCTAGTGAGCAGGTCTCCCGAGTCTTTGTTAAGTCACCATGTGGAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGTGAGCAGGTCTCCCGAGTCTTTGTTAAGTCACCATGTGGAGGC  300

seq1  TGGTGTCTGCTTGTGCCCTGCACATAACAGAGAGACCCAGTGTCTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTCTGCTTGTGCCCTGCACATAACAGAGAGACCCAGTGTCTTTGTG  350

seq1  TCTTCTAAGGAGGATTTTGACATATGAGAAAGTGTATATTTGAGGTACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAAGGAGGATTTTGACATATGAGAAAGTGTATATTTGAGGTACTA  400

seq1  CATAATTTTAAGGTGACACTGGCAGCAAGGTAACACAGTAAGGCGGGGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTTAAGGTGACACTGGCAGCAAGGTAACACAGTAAGGCGGGGGC  450

seq1  TGGAAGTGTGCCTGCCACTTGACACTAGAACTATGTCCCCTCACCATCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTGTGCCTGCCACTTGACACTAGAACTATGTCCCCTCACCATCCT  500

seq1  GAGAAATCTTGGTGTGGATGTTGTACCATGCTCATTTAGTTCCAACACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATCTTGGTGTGGATGTTGTACCATGCTCATTTAGTTCCAACACTT  550

seq1  TGGATGTCATCACGTTCCGACAGAAGGATGAGAGCCATGCTAATAGAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTCATCACGTTCCGACAGAAGGATGAGAGCCATGCTAATAGAGCC  600

seq1  CTACAAGGACATTAGCCTACTCACTTCACAAGTGGGCCAGCCCAAGACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGGACATTAGCCTACTCACTTCACAAGTGGGCCAGCCCAAGACCA  650

seq1  TGAACAAAAGAGGGAGAGCCAGGCTATGAATCCAGGCCACATGAAACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAAAAGAGGGAGAGCCAGGCTATGAATCCAGGCCACATGAAACCAT  700

seq1  AGCATGTGACTTGACCCTTCTTTTTAAAATTAAGTATCCATTGAATGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGACTTGACCCTTCTTTTTAAAATTAAGTATCCATTGAATGGAT  750

seq1  AAAGAAAATGTAACGCATATATACAATAAAATATCATTTGGTCCCAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAATGTAACGCATATATACAATAAAATATCATTTGGTCCCAAAGA  800

seq1  GGGAGGAGATTCTGTTTTGTACACCAT-GGATGGAGTTGGAGGATATTAT  849
      ||||||||||||||||||||||||||| ||||||||||||||  | ||||
seq2  GGGAGGAGATTCTGTTTTGTACACCATGGGATGGAGTTGGAGATTTTTAT  850

seq1  GTCAAG-TGACACAAAAGAGCC-ATAAAAGGAAAAATGCCACATAATTCA  897
      |||||| |||||||||| |||| |||||||| ||||||||||||||||||
seq2  GTCAAGTTGACACAAAAAAGCCTATAAAAGG-AAAATGCCACATAATTCA  899

seq1  CTGATGCCAATTGCCTTCAGTATTGCATTTATGGGGAAGAAAGTAAAAGG  947
      ||||||||||||||||||||||||||||||||||| |  |||||||||||
seq2  CTGATGCCAATTGCCTTCAGTATTGCATTTATGGGAAGAAAAGTAAAAGG  949

seq1  CTGTTTACCAGGGCCTGAAGGGAGGGACAGATGAGAAGTTAGTGTTCAAT  997
      || ||||||| |||||| ||||| ||| ||||||||||||||||||| ||
seq2  CTTTTTACCA-GGCCTG-AGGGAAGGAAAGATGAGAAGTTAGTGTTC-AT  996

seq1  GGGTAGGGATTTCAGTTTTATAAGATGAAAAGAGTTTTGGTGTAAATGGA  1047
      |||||||   ||||||| |   ||||||||||||||| |||   |||| |
seq2  GGGTAGG--ATTCAGTTAT---AGATGAAAAGAGTTTGGGT---AATGAA  1038

seq1  GTCCTTATAGGGCAGAGGCAGGGTGTCCATAGGGCAAACTCACCCCAAAA  1097
      |||  ||||||||| ||||   |||||| || ||  |||||||||   ||
seq2  GTC--TATAGGGCATAGGC-CAGTGTCC-TAAGGTCAACTCACCC---AA  1081

seq1  GGGGTGAGCT  1107
       |||||||||
seq2  AGGGTGAGCT  1091