BAC Information

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BAC

Clone NameB6Ng01-111M22
Chromosome3 (Build37)
Map Location 6,449,821 - 6,450,381
singlet/doubletsinglet
Overlap genenone
Upstream genePxmp3, EG620382, EG667759, LOC100041165, LOC100041193, EG620570, LOC100041214
Downstream geneLOC383818, 1700008P02Rik, LOC100039349, Olfr289-ps1, EG667801, Pkia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111M22.bB6Ng01-111M22.g
ACCDH918050DH918051
length1,1681,048
definitionDH918050|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M22, 5' end.DH918051|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M22, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtgatct
ttttgtcttattgatggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctattcaggaatttttcccctgtacccatgtattcacggcttttccctac
tttctcctctataagtttcagtgtctctggttttatgtggagttccttaa
tccacttagatttaaccttagtacaatgagatagaaatggatcaatttgg
tttcttctacatgataaccaccagatgtgccagcaccatttgttgaaaat
gctgtcttttttccactggatggttttagctcccttgtcaaagatcaagt
gatcataggtgtgtgggttcatctctgggtcttcaattctgttccattgg
tctacttgtctgtcactatatcagtaccatgcagtttttatcacagttgc
tctgtagtacagttttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatctgccgattgccttttctaatttgttgaagaattgagttggaatttt
gatggggattgcattaaatctgtagattgcttttggcaagatagccattt
ttactacattgatcctgccgatccatgagcatgggagatctttccatctt
ctgagatcttttttgattgctttcttcagagacttgaagttcttgtcata
gagatctttcacttccttagtacagtcacgcaagtattttgtattattgt
gactatgagaggtgtgtttccctatttttttctcagctgttatcttgtgt
acagtaagcatgactgttgagttatttatatcgctactcattaagctgtt
aagctaagagttcctggtgaatttaggtcacttatattaccatcaatcac
tctgcaatgaatttgactctcctcattatcctgactccatggtcaatggc
tgtagactcagaacaagt
gaattcaataaagccatccaagacctaaaaagggaagtagacacaataaa
gaaaacccaaagtggggcaacgctggagatagaaaccctaggaaagaaat
ctggaaccatagattcgagtatcagcaacagaatacaagagatggaagag
agaatctcaggtgcagaagattccatagagaacatcagcacaacaatcaa
agaaaatggaaaatgcaaaaaggtcctaattaaaaacatccaggaaatcc
aggacacaatgagaagaccaaacctacggataataggagtagatgagaat
gaagattttcaactcaaaggtccagcaaatattttcaacaaaattataga
agaaaacttcccaaacctaaagaaagagatgcccatgaacatagaagaag
cctacagaactccaaattgactggaccagaaaagaaattcctcccgacac
ataataatcagaacaacaaatgcactaaataaagatagaatattaaaagc
agtaagggaaaatgtcaagtaacatataagcaagcctatcagaattacac
cagatttttcaccagagactatgaaagccagaagagcctagatagatgtt
atacagacactaagagaacacaaatgccagcctaggctactatacccagc
caaactctcaattaccataaatggagaaaccaaagtattccaaaacaaaa
ccaaattcacacattatcttgccatgaatccagcccttcaagggataata
acagaaaagaaccaatacaaaggacgaaaaccatgtcctagaaaaagcaa
gaggtaatcccccaacaaacctaaaagaagacagccacaagaacagactg
ccaactttaacaacaataataataggaagcaactattacttttcctaata
tctctaatatcaatggactcaactccccataaaagacatagactacagac
tggctggtttatttcaatatctgtggtgaaatctggctcatcatgcatgt
gactggagaaaatgtcattctgggtaaatgtagatatgctcatctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_6449821_6450381
seq2: B6Ng01-111M22.g_567_1114

seq1  AGTAAGGGAAAATGTCAAGTAACATATAAGCAAGCCTATCAGAATTACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAGGGAAAATGTCAAGTAACATATAAGCAAGCCTATCAGAATTACAC  50

seq1  CAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTAGATAGATGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTTTCACCAGAGACTATGAAAGCCAGAAGAGCCTAGATAGATGTT  100

seq1  ATACAGACACTAAGAGAACACAAATGCCAGCCTAGGCTACTATACCCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGACACTAAGAGAACACAAATGCCAGCCTAGGCTACTATACCCAGC  150

seq1  CAAACTCTCAATTACCATAAATGGAGAAACCAAAGTATTCCAAAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTCAATTACCATAAATGGAGAAACCAAAGTATTCCAAAACAAAA  200

seq1  CCAAATTCACACATTATCTTGCCATGAATCCAGCCCTTCAAGGGATAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCACACATTATCTTGCCATGAATCCAGCCCTTCAAGGGATAATA  250

seq1  ACAGAAAAGAACCAATAC-AAGGACGAAAACCATGTCCTAGAAAAAGCAA  299
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ACAGAAAAGAACCAATACAAAGGACGAAAACCATGTCCTAGAAAAAGCAA  300

seq1  GAAGGTAATCCCCCAACAAACCTAAAAGAAGACAGCCACAAGAACAGACT  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-AGGTAATCCCCCAACAAACCTAAAAGAAGACAGCCACAAGAACAGACT  349

seq1  GCCAACTTTAACAACAATAATAATAGGAAGCAACTATTACTTTTCCTTAA  399
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCCAACTTTAACAACAATAATAATAGGAAGCAACTATTACTTTTCC-TAA  398

seq1  TATCTCTTAATATCAATGGACTCAACTCCCCAATAAAAAGACATAGACTA  449
      |||||| |||||||||||||||||||||||||   |||||||||||||| 
seq2  TATCTC-TAATATCAATGGACTCAACTCCCCA--TAAAAGACATAGACT-  444

seq1  ACAGACTGGCTGGTTTAATTTCCAAATATCTGTGTTGAAATTCTGGCTTC  499
      |||||||||||||||| |||||  |||||||||| ||||| |||||| ||
seq2  ACAGACTGGCTGGTTT-ATTTC--AATATCTGTGGTGAAA-TCTGGC-TC  489

seq1  ATCATGCATGTGACTGGAGAAAATGTCATTTCCTTGGTAAATGTAGATTA  549
      ||||||||||||||||||||||||||||||  || |||||||||||| ||
seq2  ATCATGCATGTGACTGGAGAAAATGTCATT--CTGGGTAAATGTAGA-TA  536

seq1  TGCTCATCTCTT  561
      ||||||||||||
seq2  TGCTCATCTCTT  548