BAC Information

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BAC

Clone NameB6Ng01-112C16
Chromosome3 (Build37)
Map Location 40,748,560 - 40,902,666
singlet/doubletdoublet
Overlap geneLarp2, Pgrmc2
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112C16.bB6Ng01-112C16.g
ACCDH918306DH918307
length1,1341,084
definitionDH918306|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C16, 5' end.DH918307|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,748,560 - 40,749,696)(40,901,575 - 40,902,666)
sequence
gaattcaatgctagtctgggtcacatgagactgtctccgcagaaggggag
ctgttggctagaggatgctttctctcacattcatataggagagctcattt
cttcatcctctacccatttgccttcatagtagagttttgacccaaataac
ttgtttctctaggctaggatggataactcctattcaagaacaaatcattc
acagatcagctagtgactcatttatttttactagaaaaatgggcacaaat
ggccaagtgctttcttggcaccccagacatttcacttccagcactgtttt
aggcacagagatctatctccacatttgtccatgctggccacataatcctg
agtttaagtgatcctcccacatctctgagtagctgagattacaagtgcct
gacaccttgtctggaacctccatggttttgaactaggaaatggaggaaga
atctgatataagctatattctagctataaaggaaaagtcaaggaacaaaa
tggcggttagcaatggcaaactggctcagctagggtgccagtaacagatg
gaacattcagaatgcataatttgaagttgttaaaaggaccatttacagag
gtatggactatcttcagagaatctggggccagctagtacaccccgagggc
tgctgcttattatctctatggctaaaagggcaaagattagaaatacagga
caggtagagaaaaaactctgctgataagctttggtgatttgacttaggga
acgaggactgtgaacttccatatcttcagacctttctaatattcagatgc
tagagggcaagtctgcacactgctactatctagggaagtttagacttctc
tagtacaaggtcaggagaaggaggattgccaagtttggggtagcacataa
ctacagcttcaggaaagaacttgggaggctaagtctggtagatttaaaat
ttgaagtcaggtctaggttacatagcatattccagggcaggctgggctac
ttaatgcaactctgtccataaaccaaccaaaattaaacaaacaaaaatac
aagcaaccaaataaaccacggaacaacccatttcccagaaccctcttagg
aggattactctatctctaaaaaataaaaattatt
gaattcacttcctagcacccaagctgggcagttcataaccacctgtaact
ccagctccaggggacccaacaccctcctctggcttctgaggacccctgca
aacacatgcatatagtcacaactacacacacacataatttaaaataaaac
atttttaaaaagatgttgaagtaagatgcctagggaagatgccagaatta
aaacattcatgagtctcatgcccaagctaatattatttatcccaccattt
ttatataattagtattactataattatcctggtttacaacctaatagata
gttagatgaattgttctatgtgcaggctttgctttctgctcaatagctct
gagttaaattagagaaataacagttaatgtggccactgaggaaaatgtaa
aatatcttactgaattgttaaatgagctgagaaatctcttatgctcaata
tttctgtttggtgaagttggatcctaaacaagtctgagtcctaaagcgta
tctgaggtgggggagaagctccagagaagtgttctgtcaagtaaaaaatg
gccaccaactgtttacaattctcatttgattatctttctataggaaaaca
ataaaaatggttatgaagaattgaaataaaactgttgttgcgtgcaaagg
aaatggcatgttctatagaattactgtgttgtttacaactaagtaagaaa
gcattccagacaaggctgagacccaccccttatactaatgattaaagaga
ttcagagatgacccagggccaaacaaggtttttccagtagatgccctcag
cactctgcctcccagtatctatagcagccctgaacaaagatatttctgcc
atctagggcttccatgtttaccaggtctacatctctgtattcttgtcagt
cctcctagatgtacacatggtttgtttcagaccctgggacaagggactgg
gatgcgtattttaatatcacagcagaccaggcctcaagaccagaccagca
tccctctgtctacctggcatactctaccccaacccaagggctccccagga
gctcttcctttaatattcagcacttgcttttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40748560_40749696
seq2: B6Ng01-112C16.b_46_1179

seq1  GAATTCAATGCTAGTCTGGGTCACATGAGACTGTCTCCGCAGAAGGGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCTAGTCTGGGTCACATGAGACTGTCTCCGCAGAAGGGGAG  50

seq1  CTGTTGGCTAGAGGATGCTTTCTCTCACATTCATATAGGAGAGCTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGCTAGAGGATGCTTTCTCTCACATTCATATAGGAGAGCTCATTT  100

seq1  CTTCATCCTCTACCCATTTGCCTTCATAGTAGAGTTTTGACCCAAATAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCTCTACCCATTTGCCTTCATAGTAGAGTTTTGACCCAAATAAC  150

seq1  TTGTTTCTCTAGGCTAGGATGGATAACTCCTATTCAAGAACAAATCATTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTCTAGGCTAGGATGGATAACTCCTATTCAAGAACAAATCATTC  200

seq1  ACAGATCAGCTAGTGACTCATTTATTTTTACTAGAAAAATGGGCACAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCAGCTAGTGACTCATTTATTTTTACTAGAAAAATGGGCACAAAT  250

seq1  GGCCAAGTGCTTTCTTGGCACCCCAGACATTTCACTTCCAGCACTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGTGCTTTCTTGGCACCCCAGACATTTCACTTCCAGCACTGTTTT  300

seq1  AGGCACAGAGATCTATCTCCACATTTGTCCATGCTGGCCACATAATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACAGAGATCTATCTCCACATTTGTCCATGCTGGCCACATAATCCTG  350

seq1  AGTTTAAGTGATCCTCCCACATCTCTGAGTAGCTGAGATTACAAGTGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAGTGATCCTCCCACATCTCTGAGTAGCTGAGATTACAAGTGCCT  400

seq1  GACACCTTGTCTGGAACCTCCATGGTTTTGAACTAGGAAATGGAGGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTTGTCTGGAACCTCCATGGTTTTGAACTAGGAAATGGAGGAAGA  450

seq1  ATCTGATATAAGCTATATTCTAGCTATAAAGGAAAAGTCAAGGAACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATATAAGCTATATTCTAGCTATAAAGGAAAAGTCAAGGAACAAAA  500

seq1  TGGCGGTTAGCAATGGCAAACTGGCTCAGCTAGGGTGCCAGTAACAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTTAGCAATGGCAAACTGGCTCAGCTAGGGTGCCAGTAACAGATG  550

seq1  GAACATTCAGAATGCATAATTTGAAGTTGTTAAAAGGACCATTTACAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTCAGAATGCATAATTTGAAGTTGTTAAAAGGACCATTTACAGAG  600

seq1  GTATGGACTATCTTCAGAGAATCTGGGGCCAGCTAGTACACCCCGAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGACTATCTTCAGAGAATCTGGGGCCAGCTAGTACACCCCGAGGGC  650

seq1  TGCTGCTTATTATCTCTATGGCTAAAAGGGCAAAGATTAGAAATACAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTTATTATCTCTATGGCTAAAAGGGCAAAGATTAGAAATACAGGA  700

seq1  CAGGTAGAGAAAAAACTCTGCTGATAAGCTTTGGTGATTTGACTTAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAGAGAAAAAACTCTGCTGATAAGCTTTGGTGATTTGACTTAGGGA  750

seq1  ACGAGGACTGTGAACTTCCATATCTTCAGACCTTTCTAATATTCAGATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGACTGTGAACTTCCATATCTTCAGACCTTTCTAATATTCAGATGC  800

seq1  TAGAGGGCAAGTCTGCACACTGCTACTATCTAGGGAAG-TTAGACTTCTC  849
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TAGAGGGCAAGTCTGCACACTGCTACTATCTAGGGAAGTTTAGACTTCTC  850

seq1  TAGTACAAGGTCAGGAGAAGGAGGATTGCCAAGTT--GGGTAGCACATAA  897
      |||||||||||||||||||||||||||||||||||  |||||||||||||
seq2  TAGTACAAGGTCAGGAGAAGGAGGATTGCCAAGTTTGGGGTAGCACATAA  900

seq1  CTACAGCTCCAGG-AAGAACTTGGGAGGCTAAGTCTGGTAGATTTTAAAA  946
      |||||||| |||| |||||||||||||||||||||||||||| |||||||
seq2  CTACAGCTTCAGGAAAGAACTTGGGAGGCTAAGTCTGGTAGA-TTTAAAA  949

seq1  TTTGAAGTCA-GTCTAGGTTACATAGCATATTCCAGGGCAGGCTGGGCTA  995
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAGTCAGGTCTAGGTTACATAGCATATTCCAGGGCAGGCTGGGCTA  999

seq1  CTTAATGCAACTCTGTCACAATAAACAAACCAAAATAAAACAAAACAAAA  1045
      ||||||||||||||||  | |||||| ||||||||| |||||||   |||
seq2  CTTAATGCAACTCTGT--CCATAAACCAACCAAAATTAAACAAA--CAAA  1045

seq1  AATACAAAGCAACCAAATAAAACACAGGACAACCCATTTCCCAGACCCTT  1095
      ||||| ||||||||||||||| ||| | ||||||||||||||||| || |
seq2  AATAC-AAGCAACCAAATAAACCACGGAACAACCCATTTCCCAGAACCCT  1094

seq1  CTTAGGGAGGTATTACTCTATCTCTTAAAAAAAAAAATTATT  1137
      |||| ||||| |||||||||||||| ||||| ||||||||||
seq2  CTTA-GGAGG-ATTACTCTATCTCTAAAAAATAAAAATTATT  1134

seq1: chr3_40901575_40902666
seq2: B6Ng01-112C16.g_69_1152 (reverse)

seq1  GAGAAAAGCAAAGTGTCTGAATTATATAGGGAAGAGCCTCTGGGGAGCCC  50
      ||||||||| ||||| ||||| |||  | ||||||||  |||||||||||
seq2  GAGAAAAGC-AAGTG-CTGAA-TATTAAAGGAAGAGCTCCTGGGGAGCCC  47

seq1  CTGGGTTGGGGGTAGAGTATGCCAGGTAGGAACAGAGGGATGCTGGTCTG  100
       |||||| |||||||||||||||||||||  |||||||||||||||||||
seq2  TTGGGTT-GGGGTAGAGTATGCCAGGTAG--ACAGAGGGATGCTGGTCTG  94

seq1  GTCTTGAGGCCTGGTCTGCTGTGATATGTAAAATACGCATCCCAGTCCCT  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTCTTGAGGCCTGGTCTGCTGTGATAT-TAAAATACGCATCCCAGTCCCT  143

seq1  TGTCCCAGGGTCTGAAACCAAACCATGTGTACATCTAGGAGGACTGACAA  200
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTCCCAGGGTCTGAAA-CAAACCATGTGTACATCTAGGAGGACTGACAA  192

seq1  GAATACAGAGATGTAGACCTGGTAAACATGGAAGCCCTAGATGGCAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACAGAGATGTAGACCTGGTAAACATGGAAGCCCTAGATGGCAGAAA  242

seq1  TATCTTTGTTCAGGGCTGCTATAGATACTGGGAGGCAGAGTGCTGAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGTTCAGGGCTGCTATAGATACTGGGAGGCAGAGTGCTGAGGGC  292

seq1  ATCTACTGGAAAAACCTTGTTTGGCCCTGGGTCATCTCTGAATCTCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTGGAAAAACCTTGTTTGGCCCTGGGTCATCTCTGAATCTCTTTA  342

seq1  ATCATTAGTATAAGGGGTGGGTCTCAGCCTTGTCTGGAATGCTTTCTTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTAGTATAAGGGGTGGGTCTCAGCCTTGTCTGGAATGCTTTCTTAC  392

seq1  TTAGTTGTAAACAACACAGTAATTCTATAGAACATGCCATTTCCTTTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGTAAACAACACAGTAATTCTATAGAACATGCCATTTCCTTTGCA  442

seq1  CGCAACAACAGTTTTATTTCAATTCTTCATAACCATTTTTATTGTTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAACAACAGTTTTATTTCAATTCTTCATAACCATTTTTATTGTTTTCC  492

seq1  TATAGAAAGATAATCAAATGAGAATTGTAAACAGTTGGTGGCCATTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAGATAATCAAATGAGAATTGTAAACAGTTGGTGGCCATTTTTT  542

seq1  ACTTGACAGAACACTTCTCTGGAGCTTCTCCCCCACCTCAGATACGCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGACAGAACACTTCTCTGGAGCTTCTCCCCCACCTCAGATACGCTTT  592

seq1  AGGACTCAGACTTGTTTAGGATCCAACTTCACCAAACAGAAATATTGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCAGACTTGTTTAGGATCCAACTTCACCAAACAGAAATATTGAGC  642

seq1  ATAAGAGATTTCTCAGCTCATTTAACAATTCAGTAAGATATTTTACATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGATTTCTCAGCTCATTTAACAATTCAGTAAGATATTTTACATTT  692

seq1  TCCTCAGTGGCCACATTAACTGTTATTTCTCTAATTTAACTCAGAGCTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGTGGCCACATTAACTGTTATTTCTCTAATTTAACTCAGAGCTAT  742

seq1  TGAGCAGAAAGCAAAGCCTGCACATAGAACAATTCATCTAACTATCTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAAAGCAAAGCCTGCACATAGAACAATTCATCTAACTATCTATT  792

seq1  AGGTTGTAAACCAGGATAATTATAGTAATACTAATTATATAAAAATGGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGTAAACCAGGATAATTATAGTAATACTAATTATATAAAAATGGTG  842

seq1  GGATAAATAATATTAGCTTGGGCATGAGACTCATGAATGTTTTAATTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAATAATATTAGCTTGGGCATGAGACTCATGAATGTTTTAATTCTG  892

seq1  GCATCTTCCCTAGGCATCTTACTTCAACATCTTTTTAAAAATGTTTTATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTCCCTAGGCATCTTACTTCAACATCTTTTTAAAAATGTTTTATT  942

seq1  TTAAATTATGTGTGTGTGTAGTTGTGACTATATGCATGTGTTTGCAGGGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTATGTGTGTGTGTAGTTGTGACTATATGCATGTGTTTGCAGGGG  992

seq1  TCCTCAGAAGCCAGAGGAGGGTGTTGGGTCCCCTGGAGCTGGAGTTACAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGAAGCCAGAGGAGGGTGTTGGGTCCCCTGGAGCTGGAGTTACAG  1042

seq1  GTGGTTATGAACTGCCCAGCTTGGGTGCTAGGAAGTGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATGAACTGCCCAGCTTGGGTGCTAGGAAGTGAATTC  1084