BAC Information

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BAC

Clone NameB6Ng01-112C21
Chromosome3 (Build37)
Map Location 72,027,473 - 72,225,461
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667377, LOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112C21.bB6Ng01-112C21.g
ACCDH918316DH918317
length9941,206
definitionDH918316|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C21, 5' end.DH918317|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,224,946 - 72,225,461)(72,027,473 - 72,028,682)
sequence
gaattctttgatatgaggaagaaaaatattttagctcttctagtcaaact
atatgagtgagcaagtaacttcaaagtctaagattattgttcagcagcaa
ttaatcacatgagttaaacattttcttctaatgaacaatgctatacaatg
gaaatataatacaagatatatgagtaatttcattacttttgtctaactca
atatacaaatgtaatggttaatctatccaatagaaggctgagagcatctg
ctgtttctgtttttttttttaataattacttatcaataggccttgattca
aaggcataccatttgtatgtaattattgctattttattggtcactgtgta
cttttattgattacttctgcttctttatgaaaagctatcaccctttgaat
ggatcctttaagttatccacctggtttctttctagttttattttaaatta
atcttaaaaatattactatagctttctgtatatgttagccttggacaaac
ttgggtgcaaattccatggatggatggcccatagtcccaagaggcctctc
tattccccaggcacactagcatgcccaggatcttagtatcactgatgagt
ggaacacaatatgtgttccaacacaactgggagtgcctggggccagcagg
agcagaagcacaggagccctgcctaaccagaagctcaagttccttctggt
ctgcactggtctaccttggtttcaaacacagcagacagacccacgggccc
cagaggaagtaccactcccaggagctcaaacatgcccaggatcttaggat
tccagaataccaagataccaggagcttggtcaacccagaatcacaggatc
acagagaaagctggattctgagcagttctaactgaaccatgattacagga
gaggcagtctccaattagatatatttgagggcagtgagcacttaagataa
tcaaatggcagcaggcaagcataggaacataagcacaaaaacga
gaattcaacagaaacacatagtattaatttgaaatgcttgtagttgaacc
aagatagaaattgaggtattctcctgtggcatctacagaaattttctcat
ccttcttttttagaaacacagatgaattttaaactctgtgctctctctac
taggttaactaattggagcattttggagagaaaaaaactctttgggtgtg
ttttattcagtgttctaatggtctgaaaagacatcctaaccaagttaact
cttatagataaaaaaacatttaatgaggaattgtttacagtttccaaaat
ttagtccattgtcatcatggtggcacacaggcagaaaaggtgttggagaa
agaggtgagacctacatcctgatttgctagatgaggtagactctggactg
ggcacaggactttgaaacctcaaagccaccccaagtggcatacctcctcc
aacaaagccacacctcttaagcctttcaaataagtatcactcatttgtga
caacgcattgaaatttatgagactatacaagtcattctgagactagcaca
agaggattttaatctgtgtccttcaaggaggctgcaatagtgacctattg
cttaaaagaaaagagtcttgaatgatgtactcatcagataatttagaatt
cagtaaataggctgtgcctattggttagcaaatgtgcaggcataataata
agaacattgattatgtaggtcaaactacatacatctgtgttgtacttgtc
atataagcttttttctgtccaagtgtgtttgcacttgtcaattaagcttt
attctttctataagaatcaagagaagcagggcattcagtgggtaaatcta
acagtaccgtgaaagaaaactagaaatgatattcactcttattctttagt
caggatcagtgttctatatatgcttgtaaacacaaatgcataagttattt
tgttggttcaagagaaaacacatgtgagtacagcatgtatatttttttac
tatttatgaggagttaagatcatcatttattttttcaagttttactggta
aatccatctctcagttaaagacttttcaatccaaaaaatgcttacctatg
ctataaccacccatgagagagggaacgaatttgtcaaaacctgttgactg
gcaatgtcctgtgatttggtgtgccccccggcacatatgaggccaatttc
taccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72224946_72225461
seq2: B6Ng01-112C21.b_43_558 (reverse)

seq1  TGGAATTTGCACCCAAGTTTGTCCAAGGCTAACATATACAGAAAGCTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATTTGCACCCAAGTTTGTCCAAGGCTAACATATACAGAAAGCTATA  50

seq1  GTAATATTTTTAAGATTAATTTAAAATAAAACTAGAAAGAAACCAGGTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTTTTAAGATTAATTTAAAATAAAACTAGAAAGAAACCAGGTGG  100

seq1  ATAACTTAAAGGATCCATTCAAAGGGTGATAGCTTTTCATAAAGAAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTAAAGGATCCATTCAAAGGGTGATAGCTTTTCATAAAGAAGCAG  150

seq1  AAGTAATCAATAAAAGTACACAGTGACCAATAAAATAGCAATAATTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATCAATAAAAGTACACAGTGACCAATAAAATAGCAATAATTACAT  200

seq1  ACAAATGGTATGCCTTTGAATCAAGGCCTATTGATAAGTAATTATTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGGTATGCCTTTGAATCAAGGCCTATTGATAAGTAATTATTAAAA  250

seq1  AAAAAAACAGAAACAGCAGATGCTCTCAGCCTTCTATTGGATAGATTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAGAAACAGCAGATGCTCTCAGCCTTCTATTGGATAGATTAAC  300

seq1  CATTACATTTGTATATTGAGTTAGACAAAAGTAATGAAATTACTCATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACATTTGTATATTGAGTTAGACAAAAGTAATGAAATTACTCATATA  350

seq1  TCTTGTATTATATTTCCATTGTATAGCATTGTTCATTAGAAGAAAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATTATATTTCCATTGTATAGCATTGTTCATTAGAAGAAAATGTT  400

seq1  TAACTCATGTGATTAATTGCTGCTGAACAATAATCTTAGACTTTGAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATGTGATTAATTGCTGCTGAACAATAATCTTAGACTTTGAAGTT  450

seq1  ACTTGCTCACTCATATAGTTTGACTAGAAGAGCTAAAATATTTTTCTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTCACTCATATAGTTTGACTAGAAGAGCTAAAATATTTTTCTTCC  500

seq1  TCATATCAAAGAATTC  516
      ||||||||||||||||
seq2  TCATATCAAAGAATTC  516

seq1: chr3_72027473_72028682
seq2: B6Ng01-112C21.g_66_1271

seq1  GAATTCAACAGAAACACATAGTATTAATTTGAAATGCTTGTAGTTGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACAGAAACACATAGTATTAATTTGAAATGCTTGTAGTTGAACC  50

seq1  AAGATAGAAATTGAGGTATTCTCCTGTGGCATCTACAGAAATTTTCTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAGAAATTGAGGTATTCTCCTGTGGCATCTACAGAAATTTTCTCAT  100

seq1  CCTTCTTTTTTAGAAACACAGATGAATTTTAAACTCTGTGCTCTCTCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTTTTTAGAAACACAGATGAATTTTAAACTCTGTGCTCTCTCTAC  150

seq1  TAGGTTAACTAATTGGAGCATTTTGGAGAGAAAAAAACTCTTTGGGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTAACTAATTGGAGCATTTTGGAGAGAAAAAAACTCTTTGGGTGTG  200

seq1  TTTTATTCAGTGTTCTAATGGTCTGAAAAGACATCCTAACCAAGTTAACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTCAGTGTTCTAATGGTCTGAAAAGACATCCTAACCAAGTTAACT  250

seq1  CTTATAGATAAAAAAACATTTAATGAGGAATTGTTTACAGTTTCCAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAGATAAAAAAACATTTAATGAGGAATTGTTTACAGTTTCCAAAAT  300

seq1  TTAGTCCATTGTCATCATGGTGGCACACAGGCAGAAAAGGTGTTGGAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCATTGTCATCATGGTGGCACACAGGCAGAAAAGGTGTTGGAGAA  350

seq1  AGAGGTGAGACCTACATCCTGATTTGCTAGATGAGGTAGACTCTGGACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGAGACCTACATCCTGATTTGCTAGATGAGGTAGACTCTGGACTG  400

seq1  GGCACAGGACTTTGAAACCTCAAAGCCACCCCAAGTGGCATACCTCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGACTTTGAAACCTCAAAGCCACCCCAAGTGGCATACCTCCTCC  450

seq1  AACAAAGCCACACCTCTTAAGCCTTTCAAATAAGTATCACTCATTTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGCCACACCTCTTAAGCCTTTCAAATAAGTATCACTCATTTGTGA  500

seq1  CAACGCATTGAAATTTATGAGACTATACAAGTCATTCTGAGACTAGCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCATTGAAATTTATGAGACTATACAAGTCATTCTGAGACTAGCACA  550

seq1  AGAGGATTTTAATCTGTGTCCTTCAAGGAGGCTGCAATAGTGACCTATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGATTTTAATCTGTGTCCTTCAAGGAGGCTGCAATAGTGACCTATTG  600

seq1  CTTAAAAGAAAAGAGTCTTGAATGATGTACTCATCAGATAATTTAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAGAAAAGAGTCTTGAATGATGTACTCATCAGATAATTTAGAATT  650

seq1  CAGTAAATAGGCTGTGCCTATTGGTTAGCAAATGTGCAGGCATAATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAATAGGCTGTGCCTATTGGTTAGCAAATGTGCAGGCATAATAATA  700

seq1  AGAACATTGATTATGTAGGTCAAACTACATACATCTGTGTTGTACTTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATTGATTATGTAGGTCAAACTACATACATCTGTGTTGTACTTGTC  750

seq1  ATATAAGCTTTTTTCTGTCCAAGTGTGTTTGCACTTGTCAATTAAGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGCTTTTTTCTGTCCAAGTGTGTTTGCACTTGTCAATTAAGCTTT  800

seq1  ATTCTTTCTATAAGAATCAAGAGAAGCAGGGCATTCAGTGGGTAAAATCT  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTCTTTCTATAAGAATCAAGAGAAGCAGGGCATTCAGTGGGT-AAATCT  849

seq1  AACAGTACCGTGAAAGAAAACTAGAAATGATATTCACTCTTATTCTTTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTACCGTGAAAGAAAACTAGAAATGATATTCACTCTTATTCTTTAG  899

seq1  TCAGGGATCAGTGTTCTATATATGCTTGTAAACAACAAATGCATAAGTTA  950
      ||| ||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TCA-GGATCAGTGTTCTATATATGCTTGTAAAC-ACAAATGCATAAGTTA  947

seq1  -TTTGTTGGTTCAAGAGAAAACACATGTGAGTACAGCATGTATATATTTT  999
       |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTTGTTGGTTCAAGAGAAAACACATGTGAGTACAGCATGTATAT-TTTT  996

seq1  ATACTATTTATGAGGAGTTAAGATCATCATTTA-TTCTTCAAGTTTTACT  1048
       |||||||||||||||||||||||||||||||| || |||||||||||||
seq2  TTACTATTTATGAGGAGTTAAGATCATCATTTATTTTTTCAAGTTTTACT  1046

seq1  GGTAAAATCCATC-CTCAGTTATAGACTTTACAAATCACAACAATGC-TA  1096
      ||| ||||||||| |||||||| ||||||| | ||||  || ||||| ||
seq2  GGT-AAATCCATCTCTCAGTTAAAGACTTTTC-AATCCAAAAAATGCTTA  1094

seq1  TCTATGCATAT-ACAACCCAAGA-AGAGGAGACAGAATTTGTTCAAAAAC  1144
       |||||| ||| || ||||| || ||||| ||  ||||||| ||||||  
seq2  CCTATGC-TATAACCACCCATGAGAGAGG-GAACGAATTTG-TCAAAA--  1139

seq1  ACTGTTGACTGGCAATGTCTTGTGATTT-GTGTGCCCCACTGCATATATG  1193
       |||||||||||||||||| |||||||| ||||||||| | ||| |||||
seq2  CCTGTTGACTGGCAATGTCCTGTGATTTGGTGTGCCCCCCGGCACATATG  1189

seq1  GGCTCAATTTCTACCAT  1210
       |  |||||||||||||
seq2  AGGCCAATTTCTACCAT  1206