BAC Information

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BAC

Clone NameB6Ng01-112D20
Chromosome3 (Build37)
Map Location 34,640,688 - 34,734,518
singlet/doubletdoublet
Overlap genenone
Upstream geneTtc14, Ccdc39, LOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC665655, Ube2l3-ps1, LOC625963, Atp11b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112D20.bB6Ng01-112D20.g
ACCDH918355DH918356
length9091,139
definitionDH918355|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D20, 5' end.DH918356|Mus musculus domesticus DNA, BAC clone: B6Ng01-112D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,640,688 - 34,641,601)(34,733,370 - 34,734,518)
sequence
gaattcaattcctagcaaccacatgtcaactaacaactgtctgaaatagg
atctgatgccctcttctggtgtgcaaacatcaatgcagacaaaataccta
tatacataaataaataagttgtaaaaaaaaaaaaaagatacttgaaagag
agagagacaatttttttttttttagttttattttaggtgtatgaatattt
gcctaggtggatactggataccctggagctggagatgtggatggctgtga
gtcatctctgggtgctgggaacttaaccctgttctcagcagcagcagcag
tgatctgagtgctgaggctagcactgtgcctgtgtacttcacccgccttc
cccttccttctcttgctccctccctctttccctcccctcctccctccctc
cctcttttcctttcctttcctttcctttcctttcctttccttttcctttt
cctttcctctttctttcctatttcctctttcctatttctttcccctttcc
ccccctttttcccttttcccctttccccccttttttcccctttccccttt
ttcctttttcccctttcccctttttcccctttcccctttcccctttcctg
cctctccctccacacagttgacattagagtcaggaactgccaggttcagc
tatgttcacccatgttcagatctcacttgggatggagagtgacaggttat
ctttaggctgttctgagactccatatcttaattcatggtttagatggagt
ctctgccttctctcacagtctccaaagatactgcagtgggtgccctttta
ctactgggtcctgggaaagatcctgagtctctgacaggccttcctggact
ttcctggacattggaggaggaggacactttatttctggcgactggtgtct
agtctacga
gaattccagagcagcctggtctacgtagagttccaggccagccaggatta
catagtgagacccttcctgccttgtagagtgtcgggcaggggaggccagg
gtgattgataaaaccgtggtcaccgccagaaggtcaaacaaggaattatt
tgctgtctctgttttctgggtttcaactataaatgaattcttttttttta
attgcccagaggggatacagtagtcacaaagtctcacaaaccagaggctg
gcagctaaaaatgacaaagggggtcatcagtgacagggacagcagtgctg
gtgggaggcagggaggcagggaggctgggccctgggagaggagggactgg
acccttccagtgtaggagtggaagtgaaggagagagagtgggtcctgggg
cagctccgaggagttgctgagaggttaggagggaacgtgagggagcaggt
gagggagcagctcacaggtgctcctcagacttccttatccagtaagagcg
cacagtgctccacgttaccacccttctcctgtggtgattctcaccttcca
aaggctaacctgtttcttcgcttgcttacatttctgctagtttactttcg
tttgtttaaaaccacctgctctctcccctcaatcacgacacccacctcta
agctgcctgtgcatttatctataccctggaaatcaaccaccatagaactt
tcttaagagttaaaagacactaagtcatctttgctgggccacctctgaaa
gttgtgattctatagattaggtgcggagagtaagcgtcaaagacttgctg
cttccggatctccaccctgtttccgagccacggagcacaagtttacaggg
tcaaaaggtaagaacctttacatttttagtagttgctgtcaagggcttct
ccaaaaatgtcccagaacactacagacaagctcttattagatctatctgt
gcatgagagaggcaaaagaacagacatgatgtaacagcttgtcggcaaaa
ataagcacacaggaattgttttaccaaaaaaaagaaaaaacccaccacac
tagccatcacttccggatccaagctccacttgcaaggttacttctgtgtc
cagcatcattaatccatggctcagattttttctgaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_34640688_34641601
seq2: B6Ng01-112D20.b_45_953

seq1  GAATTCAATTCCTAGCAACCACATGTCAACTAACAACTGTCTGAAATAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCCTAGCAACCACATGTCAACTAACAACTGTCTGAAATAGG  50

seq1  ATCTGATGCCCTCTTCTGGTGTGCAAACATCAATGCAGACAAAATACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCCCTCTTCTGGTGTGCAAACATCAATGCAGACAAAATACCTA  100

seq1  TATACATAAATAAATAAGTTGTAAAAAAAAAAAAAAGATACTTGAAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATAAATAAATAAGTTGTAAAAAAAAAAAAAAGATACTTGAAAGAG  150

seq1  AGAGAGACAATTTTTTTTTTTTTAGTTTTATTTTAGGTGTATGAATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAATTTTTTTTTTTTTAGTTTTATTTTAGGTGTATGAATATTT  200

seq1  GCCTAGGTGGATACTGGATACCCTGGAGCTGGAGATGTGGATGGCTGTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGGTGGATACTGGATACCCTGGAGCTGGAGATGTGGATGGCTGTGA  250

seq1  GTCATCTCTGGGTGCTGGGAACTTAACCCTGTTCTCAGCAGCAGCAGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTCTGGGTGCTGGGAACTTAACCCTGTTCTCAGCAGCAGCAGCAG  300

seq1  TGATCTGAGTGCTGAGGCTAGCACTGTGCCTGTGTACTTCACCCGCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTGAGTGCTGAGGCTAGCACTGTGCCTGTGTACTTCACCCGCCTTC  350

seq1  CCCTTCCTTCTCTTGCTCCCTCCCTCTTTCCCTCCCCTCCTCCCTCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTTCTCTTGCTCCCTCCCTCTTTCCCTCCCCTCCTCCCTCCCTC  400

seq1  CCTCTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTTCCTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTTCCTTTT  450

seq1  CCTTTCCTCTTTCTTTCCTATTTCCTCTTTCCTATTTCTTTCCCCTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCCTCTTTCTTTCCTATTTCCTCTTTCCTATTTCTTTCCCCTTTCC  500

seq1  CCCCCTTTTTCCCTTTTCCCCTTTCCCCCCTTTTTTCCCCTTTCCCCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTTTCCCTTTTCCCCTTTCCCCCCTTTTTTCCCCTTTCCCCTTT  550

seq1  TTCCTTTTTCCCCTTTCCCCTTTTTCCCCTTTCCCCTTTCCCCTTTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTCCCCTTTCCCCTTTTTCCCCTTTCCCCTTTCCCCTTTCCTG  600

seq1  CCTCTCCCTCCACACAGTTGACATTAGAGTCAGGAACTGCCAGGTTCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTCCACACAGTTGACATTAGAGTCAGGAACTGCCAGGTTCAGC  650

seq1  TATGTTCACCCATGTTCAGATCTCACTTGGGATGGAGAGTGACAGGTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTCACCCATGTTCAGATCTCACTTGGGATGGAGAGTGACAGGTTAT  700

seq1  CTTTAGGCTGTTCTGAGACTCCATATCTTAATTCATGGTTTAGATGGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGCTGTTCTGAGACTCCATATCTTAATTCATGGTTTAGATGGAGT  750

seq1  CTCTGCCTTCTCTCACAGTCTCCAAAGATACTGCAGTGGGTGCCCTTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTTCTCTCACAGTCTCCAAAGATACTGCAGTGGGTGCCCTTTTA  800

seq1  CTACTGGGTCCTGGGAAAGATCCTGAGTCTCTGACAGGCCTTTCCTGGAC  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CTACTGGGTCCTGGGAAAGATCCTGAGTCTCTGACAGGCC-TTCCTGGAC  849

seq1  TTTCCTGGACAATTGGAGGAAGGAGGAACACTTTATTTCTGGCAGACT-G  899
      |||||||||| |||||||| |||||| |||||||||||||||| |||| |
seq2  TTTCCTGGAC-ATTGGAGG-AGGAGG-ACACTTTATTTCTGGC-GACTGG  895

seq1  TGTCTAAGTCTACGA  914
      ||||| |||||||||
seq2  TGTCT-AGTCTACGA  909

seq1: chr3_34733370_34734518
seq2: B6Ng01-112D20.g_66_1204 (reverse)

seq1  ATATCCAGAAAACAATTCTGAGCATTGGGGATTAATTGTTGCTGGACACA  50
      |||| ||||||  || |||||||  |  ||||||| || |||||||||||
seq2  ATATTCAGAAA--AAATCTGAGCCAT--GGATTAA-TGATGCTGGACACA  45

seq1  GGAGTGACCCTTGCAGTGGGAGCTGGGATCCCGGAAGTGGATGGCT-GTG  99
      | ||| | |||||||   |||||| |||| |||||||| ||||||| |||
seq2  GAAGT-AACCTTGCAAGTGGAGCTTGGAT-CCGGAAGT-GATGGCTAGTG  92

seq1  TGTGTGTTTTTTTCTTTTTTTTTTGGTAAAAC-ATTCCTGTGTGCTTTAT  148
      ||   | |||||||  |||||||||||||||| |||||||||||| ||||
seq2  TGGTGGGTTTTTTC--TTTTTTTTGGTAAAACAATTCCTGTGTGC-TTAT  139

seq1  TTTTGCCGAC-AGCTGTTAACTTCATGTCTTGTTCTTTTTGCCTCTCTCA  197
      |||||||||| ||||||| || ||||||| ||||| ||||||||||||||
seq2  TTTTGCCGACAAGCTGTT-ACATCATGTC-TGTTC-TTTTGCCTCTCTCA  186

seq1  TGCACAGATAGATCTAATAAGAGCTTGTCTGTAGTGTTCTTGGGACATTT  247
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCACAGATAGATCTAATAAGAGCTTGTCTGTAGTGTTC-TGGGACATTT  235

seq1  TTGGAG-AGCCCTTGACAGCAACTACTAAAAATGTAAAGGTTCTTACCTT  296
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGAAGCCCTTGACAGCAACTACTAAAAATGTAAAGGTTCTTACCTT  285

seq1  TTGACCCTGT-AACTTGTGCTCCGTGGCTCGGAAACAGGGTGGAGATCCG  345
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCTGTAAACTTGTGCTCCGTGGCTCGGAAACAGGGTGGAGATCCG  335

seq1  GAAGCAGCAAGTCTTTGACGCTTACTCTCCGCACCTAATCTATAGAATCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCAAGTCTTTGACGCTTACTCTCCGCACCTAATCTATAGAATCA  385

seq1  CAACTTTCAGAGGTGGCCCAGCAAAGATGACTTAGTGTCTTTTAACTCTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCAGAGGTGGCCCAGCAAAGATGACTTAGTGTCTTTTAACTCTT  435

seq1  AAGAAAGTTCTATGGTGGTTGATTTCCAGGGTATAGATAAATGCACAGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTTCTATGGTGGTTGATTTCCAGGGTATAGATAAATGCACAGGC  485

seq1  AGCTTAGAGGTGGGTGTCGTGATTGAGGGGAGAGAGCAGGTGGTTTTAAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGAGGTGGGTGTCGTGATTGAGGGGAGAGAGCAGGTGGTTTTAAA  535

seq1  CAAACGAAAGTAAACTAGCAGAAATGTAAGCAAGCGAAGAAACAGGTTAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACGAAAGTAAACTAGCAGAAATGTAAGCAAGCGAAGAAACAGGTTAG  585

seq1  CCTTTGGAAGGTGAGAATCACCACAGGAGAAGGGTGGTAACGTGGAGCAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGAAGGTGAGAATCACCACAGGAGAAGGGTGGTAACGTGGAGCAC  635

seq1  TGTGCGCTCTTACTGGATAAGGAAGTCTGAGGAGCACCTGTGAGCTGCTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGCTCTTACTGGATAAGGAAGTCTGAGGAGCACCTGTGAGCTGCTC  685

seq1  CCTCACCTGCTCCCTCACGTTCCCTCCTAACCTCTCAGCAACTCCTCGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACCTGCTCCCTCACGTTCCCTCCTAACCTCTCAGCAACTCCTCGGA  735

seq1  GCTGCCCCAGGACCCACTCTCTCTCCTTCACTTCCACTCCTACACTGGAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCCAGGACCCACTCTCTCTCCTTCACTTCCACTCCTACACTGGAA  785

seq1  GGGTCCAGTCCCTCCTCTCCCAGGGCCCAGCCTCCCTGCCTCCCTGCCTC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCAGTCCCTCCTCTCCCAGGGCCCAGCCTCCCTGCCTCCCTGCCTC  835

seq1  CCACCAGCACTGCTGTCCCTGTCACTGATGACCCCCTTTGTCATTTTTAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGCACTGCTGTCCCTGTCACTGATGACCCCCTTTGTCATTTTTAG  885

seq1  CTGCCAGCCTCTGGTTTGTGAGACTTTGTGACTACTGTATCCCCTCTGGG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGCCTCTGGTTTGTGAGACTTTGTGACTACTGTATCCCCTCTGGG  935

seq1  CAATTAAAAAAAAAGAATTCATTTATAGTTGAAACCCAGAAAACAGAGAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAAAAAAAGAATTCATTTATAGTTGAAACCCAGAAAACAGAGAC  985

seq1  AGCAAATAATTCCTTGTTTGACCTTCTGGCGGTGACCACGGTTTTATCAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATAATTCCTTGTTTGACCTTCTGGCGGTGACCACGGTTTTATCAA  1035

seq1  TCACCCTGGCCTCCCCTGCCCGACACTCTACAAGGCAGGAAGGGTCTCAC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCTGGCCTCCCCTGCCCGACACTCTACAAGGCAGGAAGGGTCTCAC  1085

seq1  TATGTAATCCTGGCTGGCCTGGAACTCTACGTAGACCAGGCTGCTCTGGA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAATCCTGGCTGGCCTGGAACTCTACGTAGACCAGGCTGCTCTGGA  1135

seq1  ATTC  1149
      ||||
seq2  ATTC  1139