BAC Information

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BAC

Clone NameB6Ng01-112E05
Chromosome3 (Build37)13 (Build37)
Map Location 18,581,839 - 18,581,87082,138,876 - 82,139,874
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneENSMUSG00000074674, LOC100040120, Cypt12, LOC545508, Bhlhb5, Cyp7b1, LOC622921, LOC100040153
Downstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290, Trim55
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112E05.bB6Ng01-112E05.g
ACCDH918371DH918372
length607999
definitionDH918371|Mus musculus domesticus DNA, BAC clone: B6Ng01-112E05, 5' end.DH918372|Mus musculus domesticus DNA, BAC clone: B6Ng01-112E05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,581,839 - 18,581,870)(82,138,876 - 82,139,874)
sequence
gaattctgtgtttagctctgtacctcatttttaatagtgttaattgtttc
tctggagtctaacttcttgagttctttgtatatattggatattagcccct
tatccgatttaggattagtaaagagcctttcccaatcagttggttgccgt
tttgtcttattgacaatgtcctttgccttccagaaactttaaaattttat
gaggtcccatttgttgattcttgatcttacagcacaagtcattggtgttc
tattcagaaatttccccctgtgcctatatgtttgaggctcttccctattt
tctcctctataagtatcattgtctctggttttatgtggagttctttgatc
cacttagacttgagctttgtacaaggagataagaatggatcaatttgcat
tcttctacatgataactgccagttcagccagcaccatttgttgaaaatgc
tatcttttttttccactggatggtttaagctcctttgtcctttagatcca
gtgaccataggtgtgtgggttcatttctgggtcttcaattctattcctgt
ctgtcactgtaccagtaccatgcagcttccttccttcctccctccctccc
tccctcc
gaattcagatgaatttcttcttcaacatttctaaagaatacttttataac
aaggatgtacatgcaataagtatcagtgtagttgacacttaaaatatcaa
atatcagaacacatagcatttggtttacgtaatgtattacaagaaaaaag
gcctatgtaaagttgatttcttttatcttgccactgactttattccaaat
tcatttgtattttctgctggcaaaagtttgaccactgtacatagatgtgt
ctataattaggaatgcagcaattcacataaaaatcaagtatttaaaagaa
atataatttttctgctaaaacattaaccaggccttcaaaactacaataat
gcaaccaaccaaaacactttaaaataaaactggacaatttactgtggtat
atcaggagaaatcaaatgctctgtgtgcctcacacattaccatttctaaa
gaaaagctgtgatgctcacaaactccccagaacagagtactgcaacattt
cagatgctacttagatctactttgtgtgtatttaaacacaaatttaagaa
attggtctctaagcatttgcttttcacagactttccactgactgctgcta
gcttgctgtgttaccttggaactcattttgaatctctggtctgtttctca
tttacataactgtttcctcttaatattctgtaaagatgatataaaaaagc
aagaaagaagtttaattttgtttccactatatctatatttaggtgccaca
gtggaacaccatggatagatggattggcaagcctttgtactggcttccag
gcatctgagatggacacaaagctgaattagaaattgtgtgtctactacac
aaactcacacaaagctcagatcctttcatcacaatgtggtcccggataca
tcacttcagtttgaaattctcattggatcaatctatcatttcctttttta
aagtttttctatttgctttgtgctcaaatgatggtggtgggggtggtag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_18581839_18581870
seq2: B6Ng01-112E05.b_623_654 (reverse)

seq1  GGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAG  32
      ||||||||||||||||||||||||||||||||
seq2  GGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAG  32

seq1: chr13_82138876_82139874
seq2: B6Ng01-112E05.g_65_1063 (reverse)

seq1  CTACCACCACCACCACCATCATTTGAGCACAAAGCAAATAGAAAAACTTT  50
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CTACCACCCCCACCACCATCATTTGAGCACAAAGCAAATAGAAAAACTTT  50

seq1  AAAAAAGGAAATGATAGATTGATCCAATGAGAATTTCAAACTGAAGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGGAAATGATAGATTGATCCAATGAGAATTTCAAACTGAAGTGAT  100

seq1  GTATCCGGGACCACATTGTGATGAAAGGATCTGAGCTTTGTGTGAGTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCGGGACCACATTGTGATGAAAGGATCTGAGCTTTGTGTGAGTTTG  150

seq1  TGTAGTAGACACACAATTTCTAATTCAGCTTTGTGTCCATCTCAGATGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTAGACACACAATTTCTAATTCAGCTTTGTGTCCATCTCAGATGCC  200

seq1  TGGAAGCCAGTACAAAGGCTTGCCAATCCATCTATCCATGGTGTTCCACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGCCAGTACAAAGGCTTGCCAATCCATCTATCCATGGTGTTCCACT  250

seq1  GTGGCACCTAAATATAGATATAGTGGAAACAAAATTAAACTTCTTTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCACCTAAATATAGATATAGTGGAAACAAAATTAAACTTCTTTCTTG  300

seq1  CTTTTTTATATCATCTTTACAGAATATTAAGAGGAAACAGTTATGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTATATCATCTTTACAGAATATTAAGAGGAAACAGTTATGTAAAT  350

seq1  GAGAAACAGACCAGAGATTCAAAATGAGTTCCAAGGTAACACAGCAAGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAGACCAGAGATTCAAAATGAGTTCCAAGGTAACACAGCAAGCT  400

seq1  AGCAGCAGTCAGTGGAAAGTCTGTGAAAAGCAAATGCTTAGAGACCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAGTCAGTGGAAAGTCTGTGAAAAGCAAATGCTTAGAGACCAATT  450

seq1  TCTTAAATTTGTGTTTAAATACACACAAAGTAGATCTAAGTAGCATCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAATTTGTGTTTAAATACACACAAAGTAGATCTAAGTAGCATCTGA  500

seq1  AATGTTGCAGTACTCTGTTCTGGGGAGTTTGTGAGCATCACAGCTTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTGCAGTACTCTGTTCTGGGGAGTTTGTGAGCATCACAGCTTTTCT  550

seq1  TTAGAAATGGTAATGTGTGAGGCACACAGAGCATTTGATTTCTCCTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAATGGTAATGTGTGAGGCACACAGAGCATTTGATTTCTCCTGATA  600

seq1  TACCACAGTAAATTGTCCAGTTTTATTTTAAAGTGTTTTGGTTGGTTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACAGTAAATTGTCCAGTTTTATTTTAAAGTGTTTTGGTTGGTTGCA  650

seq1  TTATTGTAGTTTTGAAGGCCTGGTTAATGTTTTAGCAGAAAAATTATATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTAGTTTTGAAGGCCTGGTTAATGTTTTAGCAGAAAAATTATATT  700

seq1  TCTTTTAAATACTTGATTTTTATGTGAATTGCTGCATTCCTAATTATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAAATACTTGATTTTTATGTGAATTGCTGCATTCCTAATTATAGA  750

seq1  CACATCTATGTACAGTGGTCAAACTTTTGCCAGCAGAAAATACAAATGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTATGTACAGTGGTCAAACTTTTGCCAGCAGAAAATACAAATGAA  800

seq1  TTTGGAATAAAGTCAGTGGCAAGATAAAAGAAATCAACTTTACATAGGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAATAAAGTCAGTGGCAAGATAAAAGAAATCAACTTTACATAGGCC  850

seq1  TTTTTTCTTGTAATACATTACGTAAACCAAATGCTATGTGTTCTGATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTGTAATACATTACGTAAACCAAATGCTATGTGTTCTGATATT  900

seq1  TGATATTTTAAGTGTCAACTACACTGATACTTATTGCATGTACATCCTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTTAAGTGTCAACTACACTGATACTTATTGCATGTACATCCTTG  950

seq1  TTATAAAAGTATTCTTTAGAAATGTTGAAGAAGAAATTCATCTGAATTC  999
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAAGTATTCTTTAGAAATGTTGAAGAAGAAATTCATCTGAATTC  999