BAC Information

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BAC

Clone NameB6Ng01-112J01
Chromosome3 (Build37)
Map Location 102,573,834 - 102,713,870
singlet/doubletdoublet
Overlap geneTspan2, Tshb, Sycp1, LOC668425, LOC100043517
Upstream geneBC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb
Downstream geneNr1h5, 5730470L24Rik, Csde1, Nras, Ampd1, Dennd2c, Bcas2, Trim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112J01.bB6Ng01-112J01.g
ACCDH918596DH918597
length1,0621,123
definitionDH918596|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J01, 5' end.DH918597|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,573,834 - 102,574,904)(102,712,733 - 102,713,870)
sequence
gaattctttatagattaagaacatagttttattctttaaaataaataaat
cgccccataactcagatattatgttatgagtaccctgtctaaaccaatat
aaacaccttcttcaatatgtatgcacacaacaaaggcaagttaatggatc
aaaagtactttcgtgcatacagctgcagcacaactatattctttctcagc
gaacccctgtggggatgaatagatgctcaggttctttgggagcctgagtg
attgattttaagtggggaaacccaggcactgctcggccttttggcagcaa
gtgggaaaccccacagcagggtcgaaattgatgtatttgtcataatggaa
cagcgtataaaggagtcttaggattatattgaccacataaaagtgaaggc
atgaggaattctggaaaccgtcaggctagcttctatgtccgctaagaacc
taagactttggtatgtgctagaacaaagtgccatgcttcaggaaactttt
accaagtgttttgctgaggacacacaactcctgggatgtctcacccacag
agcgccacctctctctttttcagatattcttgctactgctactagctttg
gagaaaaaaactgagggagttaaaagtataactgtgtatgactactttac
ctatgtatgcaaaagtatttaaaaaaaatcactctgtgatgtttataccc
cagtggttgacaaatgccagctttttaagcaaacaaagagtgatcagtcc
ttcttatagctttagtttatctgtcttcctgaagacagagaacaggctca
agtgtgtactcaggttcctccagctcagagttatttcccgttcctcagaa
gtgagtttcattccctgggtgagtgaataagtttaaggaaaaccacagta
ctatagacagaagagtaaaataattttttatgcagaagataagtctagaa
acccatgtcctgtgtgatacctctctgaggtgaagctttccaaagaatgt
gctgggtaaattagagaattcatctttgagtaagatggatatatatcttt
atgtgatggata
gaattcatagaaataacaataagcactgtaaagcaccacttttcctggta
gcaagaaagaaagctgtaaaagcaagaaaataggtgtaggagttagagaa
gaaatatgaataatgcaaggtcttggtaatttaaggtggagaaaacagta
gggaatgtttcatacagtcaaatatgacccagttacacaataagactgag
aatgacattacaaagtgcctattgttggattttgaggtcataaaattatt
aatatcatggaaatagttattagttttacatagagttaaacaatatatag
ttaataagcaggaatttaaaagataatatgagaaatcagatagcttgaaa
gggcagagaagttaatcaggtatctttggttttgtatttatatgggatgc
ttggtgggatagaaaataaggatttctctgcacagagttggtatgattta
gaacagataaagttacagaagaagaggatattgaaatgcaaagtgcaatg
atcagaatgaatttgaaagaagatcaattcttttaaattggaagagaaag
taataagccagatagattcaggaagtaatgagtttggaaagaaaaggtac
acaccccattccaaattattttatgtagactcattgtttattttgctttc
atgagttttggattcgtttggctatgagttaacctagaaacataagtgtt
aatatttatctattattacttttgcatagttgatttagactctatataag
cttccttaagtgtgttagtctatcttttttgaggggtgtgtgtgttcatt
tagcaggaaaatagtagtagttgctccttaggctttatatcctgtttagc
cataggtttttggcctgataatggtgccagatatgggttgattcttcttt
ttaaatgtcattattgcttatttcttctctttcctgctttttaatccagc
tatcaacacattttattttgttattttagaagagatgactaaatttaaaa
ataacaaagaagtggacttgagatgaaaaacatattggtaagtatatatt
cttttcttaatacatcctgtaatacttaaataaattgataggtgtcctat
atttccaactatacatttcattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_102573834_102574904
seq2: B6Ng01-112J01.b_43_1104

seq1  GAATTCTTTATAGATTAAGAACATAGTTTTATTCTTTAAAATAAATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATAGATTAAGAACATAGTTTTATTCTTTAAAATAAATAAAT  50

seq1  CGCCCCATAACTCAGATATTATGTTATGAGTACCCTGTCTAAACCAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCCATAACTCAGATATTATGTTATGAGTACCCTGTCTAAACCAATAT  100

seq1  AAACACCTTCTTCAATATGTATGCACACAACAAAGGCAAGTTAATGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACCTTCTTCAATATGTATGCACACAACAAAGGCAAGTTAATGGATC  150

seq1  AAAAGTACTTTCGTGCATACAGCTGCAGCACAACTATATTCTTTCTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTACTTTCGTGCATACAGCTGCAGCACAACTATATTCTTTCTCAGC  200

seq1  GAACCCCTGTGGGGATGAATAGATGCTCAGGTTCTTTGGGAGCCTGAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCCTGTGGGGATGAATAGATGCTCAGGTTCTTTGGGAGCCTGAGTG  250

seq1  ATTGATTTTAAGTGGGGAAACCCAGGCACTGCTCGGCCTTTTGGCAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTTAAGTGGGGAAACCCAGGCACTGCTCGGCCTTTTGGCAGCAA  300

seq1  GTGGGAAACCCCACAGCAGGGTCGAAATTGATGTATTTGTCATAATGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAACCCCACAGCAGGGTCGAAATTGATGTATTTGTCATAATGGAA  350

seq1  CAGCGTATAAAGGAGTCTTAGGATTATATTGACCACATAAAAGTGAAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCGTATAAAGGAGTCTTAGGATTATATTGACCACATAAAAGTGAAGGC  400

seq1  ATGAGGAATTCTGGAAACCGTCAGGCTAGCTTCTATGTCCGCTAAGAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGAATTCTGGAAACCGTCAGGCTAGCTTCTATGTCCGCTAAGAACC  450

seq1  TAAGACTTTGGTATGTGCTAGAACAAAGTGCCATGCTTCAGGAAACTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTTTGGTATGTGCTAGAACAAAGTGCCATGCTTCAGGAAACTTTT  500

seq1  ACCAAGTGTTTTGCTGAGGACACACAACTCCTGGGATGTCTCACCCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGTGTTTTGCTGAGGACACACAACTCCTGGGATGTCTCACCCACAG  550

seq1  AGCGCCACCTCTCTCTTTTTCAGATATTCTTGCTACTGCTACTAGCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCACCTCTCTCTTTTTCAGATATTCTTGCTACTGCTACTAGCTTTG  600

seq1  GAGAAAAAAACTGAGGGAGTTAAAAGTATAACTGTGTATGACTACTTTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAAACTGAGGGAGTTAAAAGTATAACTGTGTATGACTACTTTAC  650

seq1  CTATGTATGCAAAAGTATTTAAAAAAAATCACTCTGTGATGTTTATACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATGCAAAAGTATTTAAAAAAAATCACTCTGTGATGTTTATACCC  700

seq1  CAGTGGTTGACAAATGCCAGCTTTTTAAGCAAACAAAGAGTGATCAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTTGACAAATGCCAGCTTTTTAAGCAAACAAAGAGTGATCAGTCC  750

seq1  TTCTTATAGCTTTAGTTTATCTGTCTTCCTGAAGACAGAGAACAGGCTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTATAGCTTTAGTTTATCTGTCTTCCTGAAGACAGAGAACAGGCTCA  800

seq1  AGTGTGTACTCAGGTTCCTCCAGCTCAGAGTTATTTCCCGTTCCTCAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTACTCAGGTTCCTCCAGCTCAGAGTTATTTCCCGTTCCTCAGAA  850

seq1  GTGAGTTTCATTCCCTGGGTGAGTGAATAAGTTTAAGGAAAACCACAGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTGAGTTTCATTCCCTGGGTGAGTGAATAAGTTTAAGGAAAACCACAGT-  899

seq1  ACTATAGACAGAAGAGTAAAATAATTTTTTAATGCAGAAGAATAAGTCTA  950
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  ACTATAGACAGAAGAGTAAAATAATTTTTT-ATGCAGAAG-ATAAGTCTA  947

seq1  GAAACCCATGTCCTGTGTGATTACCTCTCTGAGGGTGAAGCTTTCCAAAG  1000
      |||||||||||||||||||| ||||||||||| |||||||||||||||||
seq2  GAAACCCATGTCCTGTGTGA-TACCTCTCTGA-GGTGAAGCTTTCCAAAG  995

seq1  AATGTGCTGGGTAAAATTAGAGAATTCCATCTTTGAGTAAAGATGGATAT  1050
      |||||||||||| ||||||||||||| ||||||||||| |||||||||||
seq2  AATGTGCTGGGT-AAATTAGAGAATT-CATCTTTGAGT-AAGATGGATAT  1042

seq1  ATATCTTTATGTGAATGGATA  1071
      ||||||||||||| |||||||
seq2  ATATCTTTATGTG-ATGGATA  1062

seq1: chr3_102712733_102713870
seq2: B6Ng01-112J01.g_67_1189 (reverse)

seq1  GAATGAAATATGTATAGTTTGAAAATATAGGCCACTAATTTCAAATTTAT  50
      |||||||  |||||||| ||| ||||||||| |||  ||    |||||||
seq2  GAATGAA--ATGTATAG-TTGGAAATATAGGACACCTAT---CAATTTAT  44

seq1  TTTTAAAGTAATTACAGGATGTTATTAAG-AAAGAATATATACTTACCAA  99
      ||   |||| ||||||||||| ||||||| ||||||||||||||||||||
seq2  TT---AAGT-ATTACAGGATG-TATTAAGAAAAGAATATATACTTACCAA  89

seq1  TATGTTTTTCAATTCTTCAAGTTCCACTTCTTTGTTATTTTTAAATTTAG  149
      |||||||||||  || ||||| ||||||||||||||||||||||||||||
seq2  TATGTTTTTCA--TC-TCAAG-TCCACTTCTTTGTTATTTTTAAATTTAG  135

seq1  TCATCTCTTCTAAAATAAACAAAATAAAATGTGTTGATAGCTGGATTAAA  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCATCTCTTCTAAAAT-AACAAAATAAAATGTGTTGATAGCTGGATTAAA  184

seq1  AAGCAGGAAAGAGAAGAAATAAGCAATAATGACATTTAAAAAGAAGAATC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGAAAGAGAAGAAATAAGCAATAATGACATTTAAAAAGAAGAATC  234

seq1  AACCCATATCTGGCACCATTATCAGGCCAAAAACCTATGGCTAAACAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATATCTGGCACCATTATCAGGCCAAAAACCTATGGCTAAACAGGA  284

seq1  TATAAAGCCTAAGGAGCAACTACTACTATTTTCCTGCTAAATGAACACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCCTAAGGAGCAACTACTACTATTTTCCTGCTAAATGAACACAC  334

seq1  ACACCCCTCAAAAAAGATAGACTAACACACTTAAGGAAGCTTATATAGAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCTCAAAAAAGATAGACTAACACACTTAAGGAAGCTTATATAGAG  384

seq1  TCTAAATCAACTATGCAAAAGTAATAATAGATAAATATTAACACTTATGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATCAACTATGCAAAAGTAATAATAGATAAATATTAACACTTATGT  434

seq1  TTCTAGGTTAACTCATAGCCAAACGAATCCAAAACTCATGAAAGCAAAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGGTTAACTCATAGCCAAACGAATCCAAAACTCATGAAAGCAAAAT  484

seq1  AAACAATGAGTCTACATAAAATAATTTGGAATGGGGTGTGTACCTTTTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATGAGTCTACATAAAATAATTTGGAATGGGGTGTGTACCTTTTCT  534

seq1  TTCCAAACTCATTACTTCCTGAATCTATCTGGCTTATTACTTTCTCTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAACTCATTACTTCCTGAATCTATCTGGCTTATTACTTTCTCTTCC  584

seq1  AATTTAAAAGAATTGATCTTCTTTCAAATTCATTCTGATCATTGCACTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAAGAATTGATCTTCTTTCAAATTCATTCTGATCATTGCACTTT  634

seq1  GCATTTCAATATCCTCTTCTTCTGTAACTTTATCTGTTCTAAATCATACC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCAATATCCTCTTCTTCTGTAACTTTATCTGTTCTAAATCATACC  684

seq1  AACTCTGTGCAGAGAAATCCTTATTTTCTATCCCACCAAGCATCCCATAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTGTGCAGAGAAATCCTTATTTTCTATCCCACCAAGCATCCCATAT  734

seq1  AAATACAAAACCAAAGATACCTGATTAACTTCTCTGCCCTTTCAAGCTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAAAACCAAAGATACCTGATTAACTTCTCTGCCCTTTCAAGCTAT  784

seq1  CTGATTTCTCATATTATCTTTTAAATTCCTGCTTATTAACTATATATTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTCTCATATTATCTTTTAAATTCCTGCTTATTAACTATATATTGT  834

seq1  TTAACTCTATGTAAAACTAATAACTATTTCCATGATATTAATAATTTTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCTATGTAAAACTAATAACTATTTCCATGATATTAATAATTTTAT  884

seq1  GACCTCAAAATCCAACAATAGGCACTTTGTAATGTCATTCTCAGTCTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCAAAATCCAACAATAGGCACTTTGTAATGTCATTCTCAGTCTTAT  934

seq1  TGTGTAACTGGGTCATATTTGACTGTATGAAACATTCCCTACTGTTTTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACTGGGTCATATTTGACTGTATGAAACATTCCCTACTGTTTTCT  984

seq1  CCACCTTAAATTACCAAGACCTTGCATTATTCATATTTCTTCTCTAACTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTAAATTACCAAGACCTTGCATTATTCATATTTCTTCTCTAACTC  1034

seq1  CTACACCTATTTTCTTGCTTTTACAGCTTTCTTTCTTGCTACCAGGAAAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCTATTTTCTTGCTTTTACAGCTTTCTTTCTTGCTACCAGGAAAA  1084

seq1  GTGGTGCTTTACAGTGCTTATTGTTATTTCTATGAATTC  1138
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCTTTACAGTGCTTATTGTTATTTCTATGAATTC  1123