BAC Information

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BAC

Clone NameB6Ng01-112J02
Chromosome10 (Build37)3 (Build37)
Map Location 109,665,418 - 109,665,94217,884,884 - 17,885,800
singlet/doubletsingletsinglet
Overlap geneLOC100042506
Upstream geneNav3, LOC100042497, LOC100042502
Downstream geneLOC100042510, LOC667855, 9230102K24Rik, LOC100042518, E2f7, Csrp2, Zdhhc17, EG432502, LOC667904, Osbpl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112J02.bB6Ng01-112J02.g
ACCDH918598DH918599
length827914
definitionDH918598|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J02, 5' end.DH918599|Mus musculus domesticus DNA, BAC clone: B6Ng01-112J02, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(109,665,418 - 109,665,942)(17,884,884 - 17,885,800)
sequence
gaattctttcttcagagacttgaagttcttatcgtacagatctttcattt
ttctttttagattcacaccaaggtatattatttgtgactattttgaaggg
tcttgtttccctaatttctctctcagtctgtttaattttgtgtagagaaa
gtccattggtttatttgagttaattttatatccagctactgcactgaagc
tgtttatcaggtttaggagttctctggtggaatttttagggtcacttatg
tatgctatcatatcatctgcaaatagtgatattttaacttcttcctttcc
aacttgtatccccttgaactacttttgttgttgaattactctggctagga
cttcaagtacaatgttgaataggtagggagaaagtgggcagccttgtcta
gtcccagattttagtgggatttcttccagcttttcaccatttactttgat
gttggctactggtttgctgtagattgcttttattatgtttaggtaagggc
cttgaattcctgatcttttcaagactattagcataaggatgttgaatttt
gtcaaatgctttctcagcatctaaggagatgatcatgtggtttttgtctt
tgagtttgtttatatagtgggttactttgatggatttccgtatattaaac
catccctgcatccctgggatgaagcctacttggtcatgaaggatgatcat
tttgatatgttcttggatttggtttgcaagggttttattgagttaatata
tatgcattcgatattcataatggaaattggtttgaagtttctctttcttt
gttggatctttgtgtggtttaggtatc
gaattccatgaataaaatcagccaagatttaaaaatatatattattgtct
ctagaaaccataagggaaccatggaaataactctgttagtaacacaaact
gcagcagggaccctgtagccttaggaaagtgaaaccacacatgatgtgac
aactataaaggaggaaagccttgtcccatttttagttattcactaagcaa
gtgagcagtggaatcagcacagtacctgcacttgcctttgatgagatgct
ttccatatccaaggtctcacttcggcccatgctgctgaatttcaattacg
attattgtgaggatccaccctcacatttgccattacaagatggcgctgac
atcctgtgttctaagtagtaaacaaataatctgcgcatgtgccggggtag
ttttccactccatgtgctctaccttccccatgacgacaactcggccgatg
ggctgcagccaatcagggagcgacacgtccgaggcggagggcaattttcc
ataaaagggacggggttttgccattcgctctcttcctcctgaagaagtaa
gcaataaagcttttgccgcagaagattccggttgtcctgagtgtgttctt
gccggcggggacaaaagctcgggatagattatgatgctcttatcatcatc
atttttactagtgtttcttcatgatcaattgcagtaatatctacttcaat
gactatactgcttcctaaagaaatagctatcaatatcactaatatttact
ctgatgactatactgtttcctaagaaatagtattcatataagtttttctc
tgctattgggcatataaaattcatattcttgaaggataagttgaaaaaac
atccaaaaatttctcttgggtcagtattagacctgaaattcaaagaggtt
cgaagctcacataa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_109665418_109665942
seq2: B6Ng01-112J02.b_341_869 (reverse)

seq1  GATACCTAAACCACAGAAAGATCCAACAAAGATAGAG-AACTTCAGACCA  49
      ||||||||||||||| |||||||||||||||| |||| ||||||| ||||
seq2  GATACCTAAACCACACAAAGATCCAACAAAGAAAGAGAAACTTCAAACCA  50

seq1  ATTTCTCTTATGAATATCG-ATGCAAAAAT----CCTCAATAAAATTCTC  94
      |||||  |||||||||||| ||||| | ||     ||||||||||  || 
seq2  ATTTCCATTATGAATATCGAATGCATATATATTAACTCAATAAAACCCTT  100

seq1  GCTAACCGAATCCAAGAACATATTAAAGCAATCATCCATCCTGACCAAGT  144
      || |||| ||||||||||||||| |||   ||||||| || |||||||||
seq2  GCAAACCAAATCCAAGAACATATCAAAATGATCATCCTTCATGACCAAGT  150

seq1  AGGTTTTATTCCAGGGATGCAGGGATGGTTTAATATACGAAAATCCATCA  194
      ||| || || ||||||||||||||||||||||||||||| ||||||||||
seq2  AGGCTTCATCCCAGGGATGCAGGGATGGTTTAATATACGGAAATCCATCA  200

seq1  ATGTAATCCACTATATAAACAAACTCAAAGACAAAAACCACATGATCATC  244
      | |||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAACCCACTATATAAACAAACTCAAAGACAAAAACCACATGATCATC  250

seq1  TCGTTAGATGCAGAAAAAGCATTTGACAAGATCCAACACCCATTCATGAT  294
      || |||||||| || |||||||||||||| || ||||| ||  | ||| |
seq2  TCCTTAGATGCTGAGAAAGCATTTGACAAAATTCAACATCC--TTATGCT  298

seq1  AAAAGTTCTGGAAAGATCAGGAATTCAAGGCCCATACCTAAACATGATAA  344
      || |||  || |||||||||||||||||||||| ||||||||||| ||||
seq2  AATAGTCTTGAAAAGATCAGGAATTCAAGGCCCTTACCTAAACATAATAA  348

seq1  AAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGAGAGAAG  394
      ||||||||||||||||||||||||||||||||||||||||||| || |||
seq2  AAGCAATCTACAGCAAACCAGTAGCCAACATCAAAGTAAATGGTGAAAAG  398

seq1  CTGGAAGCAATCCCACTAAAATCAGGGACTAGACAAGGCTGCCCACTTTC  444
      ||||||| ||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGGAAGAAATCCCACTAAAATCTGGGACTAGACAAGGCTGCCCACTTTC  448

seq1  TCCCTACCTTTTCAACATAGTACTTGAAGTATTAGCCAGAGCAATTCGAC  494
      ||||||||| |||||||| |||||||||||  ||||||||| ||||| ||
seq2  TCCCTACCTATTCAACATTGTACTTGAAGTCCTAGCCAGAGTAATTCAAC  498

seq1  AACAAAAGGAGATCAAGGGGATACAAATTGG  525
      |||||||| || |||||||||||||| ||||
seq2  AACAAAAGTAGTTCAAGGGGATACAAGTTGG  529

seq1: chr3_17884884_17885800
seq2: B6Ng01-112J02.g_67_980 (reverse)

seq1  TTATGTGAGCCTTTCTGAACCTCTTTTGATATCAGGTCTAATTACTGACC  50
      ||||||||||  ||| ||||||||||  || |||||||||| ||||||||
seq2  TTATGTGAGC--TTC-GAACCTCTTTGAATTTCAGGTCTAA-TACTGACC  46

seq1  C-AGAGAAATTTTTGGATG-TTTTTCAACTTATCCTTCAAGGATATGAAT  98
      | ||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  CAAGAGAAATTTTTGGATGTTTTTTCAACTTATCCTTCAAGAATATGAAT  96

seq1  TTTATATGCCCAATAGCAGAGAAAAACTTATATGAATACTATTTCTTTAG  148
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTTATATGCCCAATAGCAGAGAAAAACTTATATGAATACTATTTC-TTAG  145

seq1  GAAACAGTATAGTCATCAGAGTAAATATTAGTGATATTGATAGCTATTTC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGTATAGTCATCAGAGTAAATATTAGTGATATTGATAGCTATTTC  195

seq1  TTTAGGAAGCAGTATAGTCATTGAAGTAGATATTACTGCAATTGATCATG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAGCAGTATAGTCATTGAAGTAGATATTACTGCAATTGATCATG  245

seq1  AAGAAACACTAGTAAAAATGATGATGATAAGAGCATCATAATCTATCCCG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACACTAGTAAAAATGATGATGATAAGAGCATCATAATCTATCCCG  295

seq1  AGCTTTTGTCCCCGCCGGCAAGAACACACTCAGGACAACCGGAATCTTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGTCCCCGCCGGCAAGAACACACTCAGGACAACCGGAATCTTCT  345

seq1  GCGGCAAAAGCTTTATTGCTTACTTCTTCAGGAGGAAGAGAGCGAATGGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGCAAAAGCTTTATTGCTTACTTCTTCAGGAGGAAGAGAGCGAATGGC  395

seq1  AAAACCCCGTCCCTTTTATGGAAAATTGCCCTCCGCCTCGGACGTGTCGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCGTCCCTTTTATGGAAAATTGCCCTCCGCCTCGGACGTGTCGC  445

seq1  TCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGTCGTCATGGGGAAGGTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGTCGTCATGGGGAAGGTA  495

seq1  GAGCACATGGAGTGGAAAACTACCCCGGCACATGCGCAGATTATTTGTTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACATGGAGTGGAAAACTACCCCGGCACATGCGCAGATTATTTGTTT  545

seq1  ACTACTTAGAACACAGGATGTCAGCGCCATCTTGTAATGGCAAATGTGAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTAGAACACAGGATGTCAGCGCCATCTTGTAATGGCAAATGTGAG  595

seq1  GGTGGATCCTCACAATAATCGTAATTGAAATTCAGCAGCATGGGCCGAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGATCCTCACAATAATCGTAATTGAAATTCAGCAGCATGGGCCGAAG  645

seq1  TGAGACCTTGGATATGGAAAGCATCTCATCAAAGGCAAGTGCAGGTACTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCTTGGATATGGAAAGCATCTCATCAAAGGCAAGTGCAGGTACTG  695

seq1  TGCTGATTCCACTGCTCACTTGCTTAGTGAATAACTAAAAATGGGACAAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGATTCCACTGCTCACTTGCTTAGTGAATAACTAAAAATGGGACAAG  745

seq1  GCTTTCCTCCTTTATAGTTGTCACATCATGTGTGGTTTCACTTTCCTAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCTCCTTTATAGTTGTCACATCATGTGTGGTTTCACTTTCCTAAG  795

seq1  GCTACAGGGTCCCTGCTGCAGTTTGTGTTACTAACAGAGTTATTTCCATG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGGGTCCCTGCTGCAGTTTGTGTTACTAACAGAGTTATTTCCATG  845

seq1  GTTCCCTTATGGTTTCTAGAGACAATAATATATATTTTTAAATCTTGGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCTTATGGTTTCTAGAGACAATAATATATATTTTTAAATCTTGGCT  895

seq1  GATTTTATTCATGGAATTC  917
      |||||||||||||||||||
seq2  GATTTTATTCATGGAATTC  914