BAC Information

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BAC

Clone NameB6Ng01-112L07
Chromosome3 (Build37)
Map Location 43,032,287 - 43,194,825
singlet/doubletdoublet
Overlap geneLOC677788
Upstream geneLOC100039204, LOC100039219
Downstream geneLOC100039264
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112L07.bB6Ng01-112L07.g
ACCDH918700DH918701
length9821,221
definitionDH918700|Mus musculus domesticus DNA, BAC clone: B6Ng01-112L07, 5' end.DH918701|Mus musculus domesticus DNA, BAC clone: B6Ng01-112L07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,193,830 - 43,194,825)(43,032,287 - 43,033,518)
sequence
gaattcaacaacaggggttagtaatcaggcttcatagcagccaggtgatc
cagagcatgagagtgtcatctgcagagccagtcagtgagaagctattata
gggtcagcttcagtgattagaatggcataagtggatatggttagtattgt
ggaaatgcttaagatattgcaatccaaaatctcacaggcagcctataagc
agtcaagacaagtatataatcctagaggaatctgctgaacccacttggca
acacaaatttgtgtaaaagtcgggtatttgcaaagtgtttcttcatgcac
ccttgggcatgatgttcttttggttatgggcctaagaagtgttcacgggc
tgaagacaaaattgatttttgagcttccaggtttggaggctggcaaaaaa
agccacgttctccaagactttcttcatggcttagtggaataaactggact
gctttgcatttaaaaaaaaataattacttctttagtgttttcatataaac
ttttctattaacatgtaatattgtgtatgctagttttctgcttttctcaa
ttattatctcataagaatgatattcagagttaagtagttttaagtatgtt
gagtggatctttaagcacaccacagtgaacacactaggggtacatatttt
tctggagagctccaaggtgctagatcgctgatgcaaagagaagtattttg
catattccttctagtttatattttatttaaaatcatttgttgttgttgtt
gttgttgttttgttttgttttgtttttgagacagggtttctctatatagc
ctggttgtcctggacttactttgtagaccaggttgcctcgactcagaaac
ccacctgcctctgcctccctatgctgggattaaaggcatgcacacatgcc
tgggcctcattaaaaatctttagtgaagtaattcccaggtcctgactaag
cattttgtactataattttgggggggaaattt
gaattcaataaagactgtcctttttaattctcatacaattatcacattga
gcactgaatttttcttttaaaagaatttggtatttgtttagtcttttgtc
tttggtaatgttgatataagtttatcaatttgatttgatagttttcacta
tgaacattttattaaatgttttgttgacttttatttattatcttatattt
tgtataaataaaatatgctgagttagtagtgctcatatgtatacaagaat
aaggctcaccacttgggataacgaagtagagggcttatctctggagagga
gaaactctcctcatcaatttcttatcacctttcatctactcttggagcct
tgtaagacttgcccttgtacactggcatatccactggtattgtcattgtg
caggtattattaagatgattttattgttgctatttcacaggtgcagcacc
tatcatatatagaagacattataggtaagtatatgttagtaccctctatc
ttttaccattttacagtccatttctatgatttcccctgaacactaaccat
catttttaattgaactataaattacttggatatatccctacaaaaaatgt
gtaggataaatttctacatattctctaaagatttttacccactgagtcat
ctcttcaactcctgtattaacttataaatactgttgggtcacaggttata
gctattcgtttttgtctgatttaggttgtttctgttgtcctagtccagac
agaaatttgtaaattttagatcatttagaaattagcatacttattttctg
cattattaatatagttttcatttagcttggggacccctttctcaagtatt
tctatcatctaccttggtaaatcaaatcttatgagatttgataaggcaat
taccaattttgagcattttttagggaagtaatcttattagcatatttctc
aaaagttgatgttttaaaatgagcttccacgaattcaagacatctctaag
gcttttgagagtcatagatgaagagagaaagttttggtagttcttcagta
ttatcctatccaaaagcatttatagatccatgtattcaaccaattagcca
aagcatccacacattctatggataatagaatctatgaacggtcaatgttt
tcatctcccaaagagaatttaactggagatcaagcatggtgagatgagaa
ctatatgaatgcctggaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_43193830_43194825
seq2: B6Ng01-112L07.b_47_1028 (reverse)

seq1  AAATTTACCCCCCCAAAAATTATAGTACAAAAATGCTTTAGTCAGGACCT  50
      ||||||  |||||| ||||||||||||| ||||||| |||||||||||| 
seq2  AAATTT--CCCCCCCAAAATTATAGTAC-AAAATGC-TTAGTCAGGACC-  45

seq1  TGGGAATTACTTTCACTTAAAGATTTTAAATGAGG-CCAGGCATGGTGCT  99
      |||||||||| ||||| |||||||||| ||||||| |||||||| ||| |
seq2  TGGGAATTAC-TTCAC-TAAAGATTTTTAATGAGGCCCAGGCAT-GTG-T  91

seq1  GCATGCCTTTAATCCCAGCATTAGGGAGGCAGAGGCAGGTGGGTTTCTGA  149
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GCATGCCTTTAATCCCAGCA-TAGGGAGGCAGAGGCAGGTGGGTTTCTGA  140

seq1  GTTCGAGGCCAACCTGGTCTACAAAGTAAGTTCCAGGACAACCAGGGCTA  199
      | |||||| ||||||||||||||||||||| ||||||||||||| |||||
seq2  G-TCGAGG-CAACCTGGTCTACAAAGTAAG-TCCAGGACAACCA-GGCTA  186

seq1  TATAGAGAAACCCTGTCTCAAAAAACAAAACAAAACAAAACAACAACAAC  249
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TATAGAGAAACCCTGTCTC-AAAAACAAAACAAAACAAAACAACAACAAC  235

seq1  AACAACAACAAATGATTTTAAATAAAATATAAACTAGAAGGAATATGCAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACAACAAATGATTTTAAATAAAATATAAACTAGAAGGAATATGCAA  285

seq1  AATACTTCTCTTTGCATCAGCGATCTAGCACCTTGGAGCTCTCCAGAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTCTCTTTGCATCAGCGATCTAGCACCTTGGAGCTCTCCAGAAAA  335

seq1  ATATGTACCCCTAGTGTGTTCACTGTGGTGTGCTTAAAGATCCACTCAAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACCCCTAGTGTGTTCACTGTGGTGTGCTTAAAGATCCACTCAAC  385

seq1  ATACTTAAAACTACTTAACTCTGAATATCATTCTTATGAGATAATAATTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTAAAACTACTTAACTCTGAATATCATTCTTATGAGATAATAATTG  435

seq1  AGAAAAGCAGAAAACTAGCATACACAATATTACATGTTAATAGAAAAGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCAGAAAACTAGCATACACAATATTACATGTTAATAGAAAAGTT  485

seq1  TATATGAAAACACTAAAGAAGTAATTATTTTTTTTTAAATGCAAAGCAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGAAAACACTAAAGAAGTAATTATTTTTTTTTAAATGCAAAGCAGT  535

seq1  CCAGTTTATTCCACTAAGCCATGAAGAAAGTCTTGGAGAACGTGGCTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTATTCCACTAAGCCATGAAGAAAGTCTTGGAGAACGTGGCTTTT  585

seq1  TTTGCCAGCCTCCAAACCTGGAAGCTCAAAAATCAATTTTGTCTTCAGCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAGCCTCCAAACCTGGAAGCTCAAAAATCAATTTTGTCTTCAGCC  635

seq1  CGTGAACACTTCTTAGGCCCATAACCAAAAGAACATCATGCCCAAGGGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAACACTTCTTAGGCCCATAACCAAAAGAACATCATGCCCAAGGGTG  685

seq1  CATGAAGAAACACTTTGCAAATACCCGACTTTTACACAAATTTGTGTTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGAAACACTTTGCAAATACCCGACTTTTACACAAATTTGTGTTGC  735

seq1  CAAGTGGGTTCAGCAGATTCCTCTAGGATTATATACTTGTCTTGACTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGGGTTCAGCAGATTCCTCTAGGATTATATACTTGTCTTGACTGCT  785

seq1  TATAGGCTGCCTGTGAGATTTTGGATTGCAATATCTTAAGCATTTCCACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCTGCCTGTGAGATTTTGGATTGCAATATCTTAAGCATTTCCACA  835

seq1  ATACTAACCATATCCACTTATGCCATTCTAATCACTGAAGCTGACCCTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAACCATATCCACTTATGCCATTCTAATCACTGAAGCTGACCCTAT  885

seq1  AATAGCTTCTCACTGACTGGCTCTGCAGATGACACTCTCATGCTCTGGAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCTTCTCACTGACTGGCTCTGCAGATGACACTCTCATGCTCTGGAT  935

seq1  CACCTGGCTGCTATGAAGCCTGATTACTAACCCCTGTTGTTGAATTC  996
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGCTGCTATGAAGCCTGATTACTAACCCCTGTTGTTGAATTC  982

seq1: chr3_43032287_43033518
seq2: B6Ng01-112L07.g_67_1287

seq1  GAATTCAATAAAGACTGTCCTTTTTAATTCTCATACAATTATCACATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATAAAGACTGTCCTTTTTAATTCTCATACAATTATCACATTGA  50

seq1  GCACTGAATTTTTCTTTTAAAAGAATTTGGTATTTGTTTAGTCTTTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTGAATTTTTCTTTTAAAAGAATTTGGTATTTGTTTAGTCTTTTGTC  100

seq1  TTTGGTAATGTTGATATAAGTTTATCAATTTGATTTGATAGTTTTCACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAATGTTGATATAAGTTTATCAATTTGATTTGATAGTTTTCACTA  150

seq1  TGAACATTTTATTAAATGTTTTGTTGACTTTTATTTATTATCTTATATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTTTATTAAATGTTTTGTTGACTTTTATTTATTATCTTATATTT  200

seq1  TGTATAAATAAAATATGCTGAGTTAGTAGTGCTCATATGTATACAAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAAATAAAATATGCTGAGTTAGTAGTGCTCATATGTATACAAGAAT  250

seq1  AAGGCTCACCACTTGGGATAACGAAGTAGAGGGCTTATCTCTGGAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTCACCACTTGGGATAACGAAGTAGAGGGCTTATCTCTGGAGAGGA  300

seq1  GAAACTCTCCTCATCAATTTCTTATCACCTTTCATCTACTCTTGGAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTCTCCTCATCAATTTCTTATCACCTTTCATCTACTCTTGGAGCCT  350

seq1  TGTAAGACTTGCCCTTGTACACTGGCATATCCACTGGTATTGTCATTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGACTTGCCCTTGTACACTGGCATATCCACTGGTATTGTCATTGTG  400

seq1  CAGGTATTATTAAGATGATTTTATTGTTGCTATTTCACAGGTGCAGCACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTATTAAGATGATTTTATTGTTGCTATTTCACAGGTGCAGCACC  450

seq1  TATCATATATAGAAGACATTATAGGTAAGTATATGTTAGTACCCTCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATATAGAAGACATTATAGGTAAGTATATGTTAGTACCCTCTATC  500

seq1  TTTTACCATTTTACAGTCCATTTCTATGATTTCCCCTGAACACTAACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACCATTTTACAGTCCATTTCTATGATTTCCCCTGAACACTAACCAT  550

seq1  CATTTTTAATTGAACTATAAATTACTTGGATATATCCCTACAAAAAATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAATTGAACTATAAATTACTTGGATATATCCCTACAAAAAATGT  600

seq1  GTAGGATAAATTTCTACATATTCTCTAAAGATTTTTACCCACTGAGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGATAAATTTCTACATATTCTCTAAAGATTTTTACCCACTGAGTCAT  650

seq1  CTCTTCAACTCCTGTATTAACTTATAAATACTGTTGGGTCACAGGTTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAACTCCTGTATTAACTTATAAATACTGTTGGGTCACAGGTTATA  700

seq1  GCTATTCGTTTTTGTCTGATTTAGGTTGTTTCTGTTGTCCTAGTCCAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTCGTTTTTGTCTGATTTAGGTTGTTTCTGTTGTCCTAGTCCAGAC  750

seq1  AGAAATTTGTAAATTTTAGATCATTTAGAAATTAGCATACTTATTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTGTAAATTTTAGATCATTTAGAAATTAGCATACTTATTTTCTG  800

seq1  CATTATTAATATAGTTTTCATTTAGCTTGGGGACCCCTTTCTCAAGTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTAATATAGTTTTCATTTAGCTTGGGGACCCCTTTCTCAAGTATT  850

seq1  TCTATCATCTACCTTGGTAAATCAAATCTTATGAGATTTGATAAGGCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCATCTACCTTGGTAAATCAAATCTTATGAGATTTGATAAGGCAAT  900

seq1  TACCAATTTTGAGCATTTTTTAGGGAAGTAATCTTATTAGCATATTTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATTTTGAGCATTTTTTAGGGAAGTAATCTTATTAGCATATTTCTC  950

seq1  AAAAGTTGATGTTTTTAAAATGAGCTT-CACGAATTCAAAGACATCTCTA  999
      ||||||||||| ||||||||||||||| ||||||||| ||||||||||||
seq2  AAAAGTTGATG-TTTTAAAATGAGCTTCCACGAATTC-AAGACATCTCTA  998

seq1  AGGCTTTTGAGAGTCATAGATG-AGAGAGAAAGTTTTTGGTAGTTCTTCA  1048
      |||||||||||||||||||||| |||||||||| ||||||||||||||| 
seq2  AGGCTTTTGAGAGTCATAGATGAAGAGAGAAAG-TTTTGGTAGTTCTTC-  1046

seq1  AGTATTATCCTATCCAAAAGCATTTATAGATCCAATGTAATTTCAACCAA  1098
      ||||||||||||||||||||||||||||||||| |||||  |||||||||
seq2  AGTATTATCCTATCCAAAAGCATTTATAGATCC-ATGTA--TTCAACCAA  1093

seq1  ATAGCCCAAAGCATTCAACACCATCCTATGAATTAATAGAATC-ATAGAC  1147
       ||| |||||||| || ||| ||| ||||| | |||||||||| ||  ||
seq2  TTAG-CCAAAGCA-TCCACA-CATTCTATGGA-TAATAGAATCTATGAAC  1139

seq1  AGTTTCAAAATGTTTCATCATCT----AAAAGGATTTAACAGGAGTTAAA  1193
       ||     |||||||  ||||||    || || ||||||| |||| | ||
seq2  GGT----CAATGTTT--TCATCTCCCAAAGAGAATTTAACTGGAGATCAA  1183

seq1  GCAATGGTGAGTTAGAGACCTA-AT-AATGATCTGGAGGCA  1232
      || |||||||| | |||| ||| || ||||  |||||||||
seq2  GC-ATGGTGAGAT-GAGAACTATATGAATG-CCTGGAGGCA  1221