BAC Information

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BAC

Clone NameB6Ng01-112N18
Chromosome3 (Build37)
Map Location 48,473,337 - 48,616,238
singlet/doubletdoublet
Overlap geneLOC100039404
Upstream geneLOC666202, LOC666208, 1700018B24Rik
Downstream geneEG666230, 4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112N18.bB6Ng01-112N18.g
ACCDH918809DH918810
length1,058781
definitionDH918809|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N18, 5' end.DH918810|Mus musculus domesticus DNA, BAC clone: B6Ng01-112N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,615,163 - 48,616,238)(48,473,337 - 48,474,111)
sequence
gaattctctctgacaagtatttcatcagagggatttttgatgaaaattct
atctacctacaaaataaatggtccaccaaaatttattactcatttcagag
tcaacacacaaggcaagattattcacataggcaagattttaaaagttgca
tgctttgtgggcacaagtagccaaactgtctgctaaacctacctttgtgt
tatttgccctgttggactgatgctaaactggaatattctgtatgagatta
tcagtacaaaatagtcctctaacctccaaaggggtaaggaagggtttaat
tttagaataaattctgagaacaatggcccaagaacatggattatgatttc
cccaatttatgggttccagtgtgttaagttgaaagattgttttatactaa
aagaacatagaaagttataaatcaatgcacttatgatatattttggtgga
actataaggtgagagggttgtggcaaaggagagaaatctcagctgtagtt
accatatgtcatcagatggcattcttagcctctttgtacattttaaacaa
tttatttaaaggtcacagtgatgttaaatcataaacaagtgtaggtaata
tgtggatctgaaggagctaaaggtggtccaaaataaattttaactagact
ctgaagatattccattcacactccaccacaatcagttaatgagcaacatg
ctctgtgtaggatttggttctcttcacgaaattacctgcacaatcattta
tgtaagatcttcagcagtgtagaaacagtaatttgctcatggactaaaat
aaaaacatatttctggagctgactcccaatgaatctatcttatgcatcgt
tcaacaaaacatatgttaacctgaaagaaattcagagaatgtcatatgca
tagtttccatggtttgccactgaccacttttcaatgatgtatgtttcctc
cctcgaggaaacgtgatgttgtttctctagaaatggagttctgctttagt
ctaaagtcttttgaattatatgggagtgataatgacagttctcgatcagt
caagtagt
gaattcttactttcatttatttgttagttgtagtgtagagaattgtagac
acaagaagacagtaaacaactataaacacttcctgcattagacagggttc
tattgaaatatacatgagcccacacagagcacattcttgtgttcatgagt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgaaaaagagcttccaagaag
gtcttaaaagttgcaaggattaggtaatccaaagggggtattctcggtac
tggagaggataagaacctgtcgcttctcagtcccaaagaaagaaagcctc
agctgccctagtccagcactgacaatcctgaagatatctgggcttgctgg
ttttcagtacagaatgagaggctgaggatgctagagtatgaagcctctga
ggatggaagagaatcaaaaccgggaaggatagcattcatcagcactttgg
tactcttccacactcacccccacactaaataaacccttctcaaaaatcac
aagagcttaaaagcattgtgtttcaaatgcattgtgcacattaagtgctg
ggtctcatggagtaattgtaatctgcacaatgatgtgtttttaatcttta
aaaatacatcacatttatgtgacacttgagaaatgattcaaaggtaaggg
tgttttgtcttttctttcaaatcacctgaaaattttttccccagtacgtc
cacaaatggcttagaattacctgtaaatgcaagtatccaaagattcaaga
ccttcttctgtttctgtggggtatatataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_48615163_48616238
seq2: B6Ng01-112N18.b_46_1103 (reverse)

seq1  ACTACTTTGACTGATTCTGAAGGACCTGTCATTATTCACCTCCCATTATA  50
      ||||| |||||||||   |||    ||||||||| ||| |||||| ||||
seq2  ACTAC-TTGACTGATCGAGAA----CTGTCATTA-TCA-CTCCCA-TATA  42

seq1  ATTTCAAAAGACTTTAAGACTAAAGGCAGAACTTCCATTTCTAGAGGAAA  100
      | ||||||||||||| |||||||| ||||||| |||||||||||| ||||
seq2  A-TTCAAAAGACTTT-AGACTAAA-GCAGAAC-TCCATTTCTAGA-GAAA  87

seq1  CAACATCACGTTTTCCTCGAGGGAGGAAACATACCATCATTGAAAAGTTG  150
      |||||||||| |||||||||||||||||||||| ||||||||||||| ||
seq2  CAACATCACG-TTTCCTCGAGGGAGGAAACATA-CATCATTGAAAAG-TG  134

seq1  GTCAGTGGCAAACCATGGAAACCTATGCATATGACATTCTCTGAATTTCT  200
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTCAGTGGCAAACCATGGAAA-CTATGCATATGACATTCTCTGAATTTCT  183

seq1  TTCAGGTTAACATATGTTTTGTTGAACGATGCATAAAGATAGATTCATTG  250
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTCAGGTTAACATATGTTTTGTTGAACGATGCAT-AAGATAGATTCATTG  232

seq1  GGAGTCAGCTCCAGAAATATGTTTTTATTTTAGTCCATGAGCAAATTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCAGCTCCAGAAATATGTTTTTATTTTAGTCCATGAGCAAATTACT  282

seq1  GTTTCTACACTGCTGAAGATCTTACATAAATGATTGTGCAGGTAATTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GTTTCTACACTGCTGAAGATCTTACATAAATGATTGTGCAGGTAATTTCG  332

seq1  TGAAGAGAACCAAATCCTACACAGAGCATGTTGCTCATTAACTGATTGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAACCAAATCCTACACAGAGCATGTTGCTCATTAACTGATTGTG  382

seq1  GTGGAGTGTGAATGGAATATCTTCAGAGTCTAGTTAAAATTTATTTTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTGTGAATGGAATATCTTCAGAGTCTAGTTAAAATTTATTTTGGA  432

seq1  CCACCTTTAGCTCCTTCAGATCCACATATTACCTACACTTGTTTATGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTTAGCTCCTTCAGATCCACATATTACCTACACTTGTTTATGATT  482

seq1  TAACATCACTGTGACCTTTAAATAAATTGTTTAAAATGTACAAAGAGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATCACTGTGACCTTTAAATAAATTGTTTAAAATGTACAAAGAGGCT  532

seq1  AAGAATGCCATCTGATGACATATGGTAACTACAGCTGAGATTTCTCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGCCATCTGATGACATATGGTAACTACAGCTGAGATTTCTCTCCT  582

seq1  TTGCCACAACCCTCTCACCTTATAGTTCCACCAAAATATATCATAAGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACAACCCTCTCACCTTATAGTTCCACCAAAATATATCATAAGTGC  632

seq1  ATTGATTTATAACTTTCTATGTTCTTTTAGTATAAAACAATCTTTCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTATAACTTTCTATGTTCTTTTAGTATAAAACAATCTTTCAACT  682

seq1  TAACACACTGGAACCCATAAATTGGGGAAATCATAATCCATGTTCTTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACACTGGAACCCATAAATTGGGGAAATCATAATCCATGTTCTTGGG  732

seq1  CCATTGTTCTCAGAATTTATTCTAAAATTAAACCCTTCCTTACCCCTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTCTCAGAATTTATTCTAAAATTAAACCCTTCCTTACCCCTTTG  782

seq1  GAGGTTAGAGGACTATTTTGTACTGATAATCTCATACAGAATATTCCAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTAGAGGACTATTTTGTACTGATAATCTCATACAGAATATTCCAGT  832

seq1  TTAGCATCAGTCCAACAGGGCAAATAACACAAAGGTAGGTTTAGCAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCAGTCCAACAGGGCAAATAACACAAAGGTAGGTTTAGCAGACA  882

seq1  GTTTGGCTACTTGTGCCCACAAAGCATGCAACTTTTAAAATCTTGCCTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGCTACTTGTGCCCACAAAGCATGCAACTTTTAAAATCTTGCCTAT  932

seq1  GTGAATAATCTTGCCTTGTGTGTTGACTCTGAAATGAGTAATAAATTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAATCTTGCCTTGTGTGTTGACTCTGAAATGAGTAATAAATTTTG  982

seq1  GTGGACCATTTATTTTGTAGGTAGATAGAATTTTCATCAAAAATCCCTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACCATTTATTTTGTAGGTAGATAGAATTTTCATCAAAAATCCCTCT  1032

seq1  GATGAAATACTTGTCAGAGAGAATTC  1076
      ||||||||||||||||||||||||||
seq2  GATGAAATACTTGTCAGAGAGAATTC  1058

seq1: chr3_48473337_48474111
seq2: B6Ng01-112N18.g_67_847

seq1  GAATTCTTACTTTCATTTATTTGTTAGTTGTAGTGTAGAGAATTGTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACTTTCATTTATTTGTTAGTTGTAGTGTAGAGAATTGTAGAC  50

seq1  ACAAGAAGACAGTAAACAACTATAAACACTTCCTGCATTAGACAGGGTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGACAGTAAACAACTATAAACACTTCCTGCATTAGACAGGGTTC  100

seq1  TATTGAAATATACATGAGCCCACACAGAGCACATTCTTGTGTTCATGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAATATACATGAGCCCACACAGAGCACATTCTTGTGTTCATGAGT  150

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAAAGAGCTTCCAAGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAAAAGAGCTTCCAAGAAG  200

seq1  GTCTTAAAAGTTGCAAGGATTAGGTAATCCAAAGGGGGTATTCTCGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAAAAGTTGCAAGGATTAGGTAATCCAAAGGGGGTATTCTCGGTAC  250

seq1  TGGAGAGGATAAGAACCTGTCGCTTCTCAGTCCCAAAGAAAGAAAGCCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGATAAGAACCTGTCGCTTCTCAGTCCCAAAGAAAGAAAGCCTC  300

seq1  AGCTGCCCTAGTCCAGCACTGACAATCCTGAAGATATCTGGGCTTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCCTAGTCCAGCACTGACAATCCTGAAGATATCTGGGCTTGCTGG  350

seq1  TTTTCAGTACAGAATGAGAGGCTGAGGATGCTAGAGTATGAAGCCTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAGTACAGAATGAGAGGCTGAGGATGCTAGAGTATGAAGCCTCTGA  400

seq1  GGATGGAAGAGAATCAAAACCGGGAAGGATAGCATTCATCAGCACTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGAAGAGAATCAAAACCGGGAAGGATAGCATTCATCAGCACTTTGG  450

seq1  TACTCTTCCACACTCACCCCCACACTAAATAAACCCTTCTCAAAAATCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTTCCACACTCACCCCCACACTAAATAAACCCTTCTCAAAAATCAC  500

seq1  AAGAGCTTAAAAGCATTGTGTTTCAAATGCATTGTGCACATTAAGTGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTTAAAAGCATTGTGTTTCAAATGCATTGTGCACATTAAGTGCTG  550

seq1  GGTCTCATGGAGTAATTGTAATCTGCACAATGATGTGTTTTTAATCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCATGGAGTAATTGTAATCTGCACAATGATGTGTTTTTAATCTTTA  600

seq1  AAAATACATCACA-TTATGTGACACTTGAGAAATGATTCAGAGGTAAGGG  649
      ||||||||||||| |||||||||||||||||||||||||| |||||||||
seq2  AAAATACATCACATTTATGTGACACTTGAGAAATGATTCAAAGGTAAGGG  650

seq1  TG-TTTGTC-TTTCTTTCAGAGCACCTGAAA--TTTTTCCCCAGTACGTC  695
      || |||||| ||||||||| | |||||||||  |||||||||||||||||
seq2  TGTTTTGTCTTTTCTTTCAAATCACCTGAAAATTTTTTCCCCAGTACGTC  700

seq1  CAC-AATGGCTTAGAATTACCTGTAAATGCAAGTATCCAAAGATCCAAGA  744
      ||| |||||||||||||||||||||||||||||||||||||||| |||||
seq2  CACAAATGGCTTAGAATTACCTGTAAATGCAAGTATCCAAAGATTCAAGA  750

seq1  CCTTCTTCTGTTCTCTGT-GGGTATATATACA  775
      |||||||||||| ||||| |||||||||||||
seq2  CCTTCTTCTGTT-TCTGTGGGGTATATATACA  781