BAC Information

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BAC

Clone NameB6Ng01-113B16
Chromosome3 (Build37)
Map Location 84,105,845 - 84,278,092
singlet/doubletdoublet
Overlap gene6330505N24Rik
Upstream geneDchs2, 1700028M03Rik, LOC100042007, LOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713
Downstream geneArfip1, EG667788, EG627369, Tigd4, Tmem154, LOC624889, Fbxw7, Dear1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113B16.bB6Ng01-113B16.g
ACCDH918984DH918985
length671735
definitionDH918984|Mus musculus domesticus DNA, BAC clone: B6Ng01-113B16, 5' end.DH918985|Mus musculus domesticus DNA, BAC clone: B6Ng01-113B16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,105,845 - 84,106,515)(84,277,361 - 84,278,092)
sequence
gaattcagggaggagacagaggtggtcagtttgtgaagatcaacctcttt
tgattcacagccagaaaagcctctaggaaactagagattgtttcttcatt
tcagtaatccagagctctcaggtcagaaaactatgggcctccacagagaa
agaggccggcatttgccagagcaggctttatttctcctttcatagaaata
aagaaaggaaggggaagaggagggaacgaagcaagcaagcataaacttca
aggatggaagatagaggtcctgggacaagtggtagcccacccaacaccac
cccatgtgccccatgcactgtcctgttctggggagacaaggtctggtgag
gctgcccaatctggactgtaagacagacctggcaggggcatattgtttgg
caagcacgatgcacttttagttattttaattagttgccaatctgtaaaga
tctagtggtttcacgttaacaaaagctagactcctggttccctccagctg
agctggctagcctgaatgtaagcttctactgccctccccagttaacccta
ttagaccatggtttcactcagcacttgcgccccctgcctgcccctgcagc
gacagacctgggcatctaaggcatgggcaggtgtctgtccatctattttc
ttacccagatagctctcacca
gaattcatccttcagagatgcccgggaagaggtaagatgagaggatgggg
gtgagagaacgggaggggcagagtcctgctgtcaatgctgttgtgtgttg
gagttgcatgtttcagaacctttggtaaatttcactgggaaaggagagcg
tgcaagctagatgtgctccgggagccacagaaagcagccccccccagccc
ctcccttcccgaacgatgagctgaggctgagtagcaagagtatggggagt
gtgtgtgcaggatcctcccaggcatccccatggattatgacctcatacag
agaacacataagttggggccccacttaagaggctctggcctcccagcacc
accctgttgctagcgaatctgctgtggttttctcaggaagagaagttcag
atggaacccagctcttgtagtctcccctgggacagaaggctgagctctag
aacccagctatctgggatgagctgcagccatctgggatcaaatgcctttt
gttaagagacataagtcctagatcgctttgggattccttcccccccagtg
tgccctcagcgtgcgtgttgagatggcctccgtgcctcagacctctggat
taggtcaccccttttgtggggatggatttccacagagccaaaccgtctgt
gctattttcagacggatttttatatgaagagtgtttccagttaacgctaa
ttttgttcctttgaaggaggaaacgggttgtttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_84105845_84106515
seq2: B6Ng01-113B16.b_48_718

seq1  GAATTCAGGGAGGAGACAGAGGTGGTCAGTTTGTGAAGATCAACCTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGAGGAGACAGAGGTGGTCAGTTTGTGAAGATCAACCTCTTT  50

seq1  TGATTCACAGCCAGAAAAGCCTCTAGGAAACTAGAGATTGTTTCTTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCACAGCCAGAAAAGCCTCTAGGAAACTAGAGATTGTTTCTTCATT  100

seq1  TCAGTAATCCAGAGCTCTCAGGTCAGAAAACTATGGGCCTCCACAGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTAATCCAGAGCTCTCAGGTCAGAAAACTATGGGCCTCCACAGAGAA  150

seq1  AGAGGCCGGCATTTGCCAGAGCAGGCTTTATTTCTCCTTTCATAGAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCGGCATTTGCCAGAGCAGGCTTTATTTCTCCTTTCATAGAAATA  200

seq1  AAGAAAGGAAGGGGAAGAGGAGGGAACGAAGCAAGCAAGCATAAACTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGGAAGGGGAAGAGGAGGGAACGAAGCAAGCAAGCATAAACTTCA  250

seq1  AGGATGGAAGATAGAGGTCCTGGGACAAGTGGTAGCCCACCCAACACCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGGAAGATAGAGGTCCTGGGACAAGTGGTAGCCCACCCAACACCAC  300

seq1  CCCATGTGCCCCATGCACTGTCCTGTTCTGGGGAGACAAGGTCTGGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTGCCCCATGCACTGTCCTGTTCTGGGGAGACAAGGTCTGGTGAG  350

seq1  GCTGCCCAATCTGGACTGTAAGACAGACCTGGCAGGGGCATATTGTTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCCAATCTGGACTGTAAGACAGACCTGGCAGGGGCATATTGTTTGG  400

seq1  CAAGCACGATGCACTTTTAGTTATTTTAATTAGTTGCCAATCTGTAAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCACGATGCACTTTTAGTTATTTTAATTAGTTGCCAATCTGTAAAGA  450

seq1  TCTAGTGGTTTCACGTTAACAAAAGCTAGACTCCTGGTTCCCTCCAGCAG  500
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTAGTGGTTTCACGTTAACAAAAGCTAGACTCCTGGTTCCCTCCAGCTG  500

seq1  AGCTGGCTAGCCTGAATGTAAGCTTCTACTGCCCTCCCCAGTTAACCCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCTAGCCTGAATGTAAGCTTCTACTGCCCTCCCCAGTTAACCCTA  550

seq1  TTAGACCATGGTTTCACTCAGCACTTGCGCCCCCTGCCTGCCCCTGCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCATGGTTTCACTCAGCACTTGCGCCCCCTGCCTGCCCCTGCAGC  600

seq1  GACAGACCTGGGCATCTAAGGCATGGGCAGGTGTCTGTCCATCTATTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACCTGGGCATCTAAGGCATGGGCAGGTGTCTGTCCATCTATTTTC  650

seq1  TTACCCAGAGAGCTCTCACCA  671
      ||||||||| |||||||||||
seq2  TTACCCAGATAGCTCTCACCA  671

seq1: chr3_84277361_84278092
seq2: B6Ng01-113B16.g_71_805 (reverse)

seq1  TTTAACAA-CCGTTTCCTCCTTCAAAGGAACACATTTAGCGTTAACTGGA  49
      || ||||| ||||||||||||||||||||||| | |||||||||||||||
seq2  TTAAACAACCCGTTTCCTCCTTCAAAGGAACAAAATTAGCGTTAACTGGA  50

seq1  AACACTCTTCATAT-AAAATCCGTCTGAAAATAGC-CTGACGGTTTGGCT  97
      |||||||||||||| |||||||||||||||||||| | ||||||||||||
seq2  AACACTCTTCATATAAAAATCCGTCTGAAAATAGCACAGACGGTTTGGCT  100

seq1  CTGTGGAAATCCATCCCCACAAAAGGGGTGACCTAATCCAGAGGTCTGAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAAATCCATCCCCACAAAAGGGGTGACCTAATCCAGAGGTCTGAG  150

seq1  GCACGGAGGCCATCTCAACACGCACGCTGAGGGCACACTGGGGGGGAAGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGAGGCCATCTCAACACGCACGCTGAGGGCACACTGGGGGGGAAGG  200

seq1  AATCCCAAAGCGATCTAGGACTTATGTCTCTTAACAAAAGGCATTTGATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAAAGCGATCTAGGACTTATGTCTCTTAACAAAAGGCATTTGATC  250

seq1  CCAGATGGCTGCAGCTCATCCCAGATAGCTGGGTTCTAGAGCTCAGCCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGCTGCAGCTCATCCCAGATAGCTGGGTTCTAGAGCTCAGCCTT  300

seq1  CTGTCCCAGGGGAGACTACAAGAGCTGGGTTCCATCTGAACTTCTCTTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCCAGGGGAGACTACAAGAGCTGGGTTCCATCTGAACTTCTCTTCC  350

seq1  TGAGAAAACCACAGCAGATTCGCTAGCAACAGGGTGGTGCTGGGAGGCCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAACCACAGCAGATTCGCTAGCAACAGGGTGGTGCTGGGAGGCCA  400

seq1  GAGCCTCTTAAGTGGGGCCCCAACTTATGTGTTCTCTGTATGAGGTCATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCTTAAGTGGGGCCCCAACTTATGTGTTCTCTGTATGAGGTCATA  450

seq1  ATCCATGGGGATGCCTGGGAGGATCCTGCACACACACTCCCCATACTCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATGGGGATGCCTGGGAGGATCCTGCACACACACTCCCCATACTCTT  500

seq1  GCTACTCAGCCTCAGCTCATCGTTCGGGAAGGGAGGGGCTGGGGGGGGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTCAGCCTCAGCTCATCGTTCGGGAAGGGAGGGGCTGGGGGGGGCT  550

seq1  GCTTTCTGTGGCTCCCGGAGCACATCTAGCTTGCACGCTCTCCTTTCCCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGTGGCTCCCGGAGCACATCTAGCTTGCACGCTCTCCTTTCCCA  600

seq1  GTGAAATTTACCAAAGGTTCTGAAACATGCAACTCCAACACACAACAGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAATTTACCAAAGGTTCTGAAACATGCAACTCCAACACACAACAGCA  650

seq1  TTGACAGCAGGACTCTGCCCCTCCCGTTCTCTCACCCCCATCCTCTCATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGCAGGACTCTGCCCCTCCCGTTCTCTCACCCCCATCCTCTCATC  700

seq1  TTACCTCTTCCCGGGCATCTCTGAAGGATGAATTC  732
      |||||||||||||||||||||||||||||||||||
seq2  TTACCTCTTCCCGGGCATCTCTGAAGGATGAATTC  735