BAC Information

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BAC

Clone NameB6Ng01-113C02
Chromosome3 (Build37)
Map Location 82,320,131 - 82,545,831
singlet/doubletdoublet
Overlap geneNpy2r, LOC100041940
Upstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3, Mtap9
Downstream geneEG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2, 1700028M03Rik, LOC100042007, LOC100042091
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113C02.bB6Ng01-113C02.g
ACCDH919004DH919005
length1,143163
definitionDH919004|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C02, 5' end.DH919005|Mus musculus domesticus DNA, BAC clone: B6Ng01-113C02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,320,131 - 82,321,280)(82,545,669 - 82,545,831)
sequence
gaattcttctccttccaatatgatgatgccttgctatctctctatacatc
agtcatatagctatctcttgttatttactatttcgttttggcttgctata
ttcttaataaagtcaactcagtcaaagcaaaaaaaccatcctcaatagta
ctgttgatagatgttacccaaacattacaataccacatgagacaatcctg
ccacccacatgttaatgtatgccatcaacagtctccacaggtcttcatta
atatgactaaagagctgatttcaaactcacttacatctacttgacatctt
ttatcattgtatcttcaaataagatatctgtggcaaatcttctagcatgg
tatgcacctagagaaattcaggtttctcatttctatttcccattggttat
cagtacaaccagcaccaggtagagtatcaaagtagacagtttccacctcc
actgcacttgttgtgtattttttcaagagaccatgctcagaacagatcat
gagggttgccaccagccttttccattcttcactgaagcagacaggtcaca
atatagtcatactggctctggcagcacagaacattcatgcaacactgcac
aactataggctgaaaaccttccaggccgacaaagaccatgtaatgaatac
aaaagttttaatgatggaatcagctctgaacattgttccttttctagaaa
aacatgcacacaatctttgggggaatacatatggcatctgtagctggggg
ctatagctcaaatgataaaaatgcatacaggaagcccagggtgcaatacc
cagtaccacacaaactaggcagagtaatgtctgcctataatcccagcatt
catagggttagaaattccaagtcctcttagagtccaccttgagttaccag
agatcctgtctcacaaccccagcaagaagaaaaccacagcaaagctaaac
cataagacaacttcttcacttagaagtcttaagtataaaatacaaagtct
agtgcgtttgatatttcaatctctttttttttagcttatctcctaagtga
atctcatctcctatctaaatccttggataatgcagttaagcaataattat
gaatgctttaatatagtctaaagtgaacatcccacaatcctgc
ttgcacccggggagcctgagacagaggcagtgtttgggaagggtcttcag
cctgcactatagatgcccctctttcttgcttgtctttctctgatagacat
aaaggattggggattagagatcaggtcccaggtaaaggggggggggtggg
caggaaggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_82320131_82321280
seq2: B6Ng01-113C02.b_45_1187

seq1  GAATTCTTCTCCTTCCAATATGATGATGCCTTGCTATCTCTCTATACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTCCTTCCAATATGATGATGCCTTGCTATCTCTCTATACATC  50

seq1  AGTCATATAGCTATCTCTTGTTATTTACTATTTCGTTTTGGCTTGCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATATAGCTATCTCTTGTTATTTACTATTTCGTTTTGGCTTGCTATA  100

seq1  TTCTTAATAAAGTCAACTCAGTCAAAGCAAAAAAACCATCCTCAATAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAATAAAGTCAACTCAGTCAAAGCAAAAAAACCATCCTCAATAGTA  150

seq1  CTGTTGATAGATGTTACCCAAACATTACAATACCACATGAGACAATCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGATAGATGTTACCCAAACATTACAATACCACATGAGACAATCCTG  200

seq1  CCACCCACATGTTAATGTATGCCATCAACAGTCTCCACAGGTCTTCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACATGTTAATGTATGCCATCAACAGTCTCCACAGGTCTTCATTA  250

seq1  ATATGACTAAAGAGCTGATTTCAAACTCACTTACATCTACTTGACATCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACTAAAGAGCTGATTTCAAACTCACTTACATCTACTTGACATCTT  300

seq1  TTATCATTGTATCTTCAAATAAGATATCTGTGGCAAATCTTCTAGCATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATTGTATCTTCAAATAAGATATCTGTGGCAAATCTTCTAGCATGG  350

seq1  TATGCACCTAGAGAAATTCAGGTTTCTCATTTCTATTTCCCATTGGTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACCTAGAGAAATTCAGGTTTCTCATTTCTATTTCCCATTGGTTAT  400

seq1  CAGTACAACCAGCACCAGGTAGAGTATCAAAGTAGACAGTTTCCACCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAACCAGCACCAGGTAGAGTATCAAAGTAGACAGTTTCCACCTCC  450

seq1  ACTGCACTTGTTGTGTATTTTTTCAAGAGACCATGCTCAGAACAGATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCACTTGTTGTGTATTTTTTCAAGAGACCATGCTCAGAACAGATCAT  500

seq1  GAGGGTTGCCACCAGCCTTTTCCATTCTTCACTGAAGCAGACAGGTCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTGCCACCAGCCTTTTCCATTCTTCACTGAAGCAGACAGGTCACA  550

seq1  ATATAGTCATACTGGCTCTGGCAGCACAGAACATTCATGCAACACTGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAGTCATACTGGCTCTGGCAGCACAGAACATTCATGCAACACTGCAC  600

seq1  AACTATAGGCTGAAAACCTTCCAGGCCGACAAAGACCATGTAATGAATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAGGCTGAAAACCTTCCAGGCCGACAAAGACCATGTAATGAATAC  650

seq1  AAAAG-TTTAATGATGGAATCAGCTCTGAACATTGTTCCTTTTCTAGAAA  699
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTTTAATGATGGAATCAGCTCTGAACATTGTTCCTTTTCTAGAAA  700

seq1  AACATGCACACAATCTTTGGGGGAATACATATGGCATCTGTAGCTGGGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCACACAATCTTTGGGGGAATACATATGGCATCTGTAGCTGGGGG  750

seq1  CTATAGCTCAAATGATAAAAATGCATACAGGAAGCCCAGGGTGCAATACC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCTCAAATGATAAAAATGCATACAGGAAGCCCAGGGTGCAATACC  800

seq1  CAGTACCACACAAACTAGGCAGAGTAATGTCTGCCTATAATCCCAGCAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGTACCACACAAACTAGGCAGAGTAATGTCTGCCTATAATCCCAGC-AT  849

seq1  TCATAGGATTAGAAATTCCAAGTCCTCTTAGAGTCCACCTTGAGTTACCA  899
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGGTTAGAAATTCCAAGTCCTCTTAGAGTCCACCTTGAGTTACCA  899

seq1  GAGATCCTGTCTCACAACCCCAGCAAGAAGAAAACCACAGCAAAGCTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCCTGTCTCACAACCCCAGCAAGAAGAAAACCACAGCAAAGCTAAA  949

seq1  CCATAAGACAACTTCTTCACTTAGAAGTCTTAAGTATAAAATACAAAGTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAAGACAACTTCTTCACTTAGAAGTCTTAAGTATAAAATACAAAGTC  999

seq1  TAGTGCGTTTTTAATATTTCAATCTCTTTTTTTATAGC-TATCTCCTAAG  1048
      |||||||  ||| |||||||||||||||||||| |||| |||||||||||
seq2  TAGTGCG--TTTGATATTTCAATCTCTTTTTTTTTAGCTTATCTCCTAAG  1047

seq1  TGAATCTCATCTCTATTCTAAATTCCTTGATATTGCAGTTATAGCAATTA  1098
      |||||||||||||   ||||||| | | |||| |||||||| ||||||  
seq2  TGAATCTCATCTCCTATCTAAATCCTTGGATAATGCAGTTA-AGCAAT--  1094

seq1  AATTAATGAAATGCTTTTAATATAGTCATAAGTGAACA-CCCACAATTCC  1147
      |||| ||| ||||| ||||||||||||  ||||||||| ||||||| |||
seq2  AATT-ATG-AATGC-TTTAATATAGTCTAAAGTGAACATCCCACAA-TCC  1140

seq1  TGC  1150
      |||
seq2  TGC  1143

seq1: chr3_82545669_82545831
seq2: B6Ng01-113C02.g_73_235 (reverse)

seq1  CCTCCCCTTCCTGCCCACCCCCCCCCCTTTACCTGGGACCTGATCTCTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTTCCTGCCCACCCCCCCCCCTTTACCTGGGACCTGATCTCTAA  50

seq1  TCCCCAATCCTTTATGTCTATCAGAGAAAGACAAGCAAGAAAGAGGGGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAATCCTTTATGTCTATCAGAGAAAGACAAGCAAGAAAGAGGGGCA  100

seq1  TCTATAGTGCAGGCTGAAGACCCTTCCCAAACACTGCCTCTGTCTCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTGCAGGCTGAAGACCCTTCCCAAACACTGCCTCTGTCTCAGGC  150

seq1  TCCCCGGGTGCAA  163
      |||||||||||||
seq2  TCCCCGGGTGCAA  163