BAC Information

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BAC

Clone NameB6Ng01-113I06
Chromosome3 (Build37)
Map Location 14,185,474 - 14,311,425
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
Downstream geneEG622229, LOC668062, Slc7a12, LOC668068, Lrrcc1, E2f5, 1810022K09Rik, LOC100039929, Car13, EG545507, Car1, LOC100041785, Car3, Car2, EG634323, LOC100039985, LOC751864
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113I06.bB6Ng01-113I06.g
ACCDH919290DH919291
length1,0541,116
definitionDH919290|Mus musculus domesticus DNA, BAC clone: B6Ng01-113I06, 5' end.DH919291|Mus musculus domesticus DNA, BAC clone: B6Ng01-113I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,185,474 - 14,186,528)(14,310,301 - 14,311,425)
sequence
gaattcatttgacctctgacaggtagatccaagtcttatgatttctttaa
ttctgcaaaactaacataatttttttttcatcaaagaagataaaagctta
agatatattagcattctgattgtattgaaattcatattgtacattaaaaa
gtcatttaacagacgtctgtaaaatagataaaacatatttaaccaaaggg
aatttaaaacctttagtttttttactgaatagtaagtagtgagtatcctg
ccagtttatcagaattccatttatgagtataaaaacattgaacctttaaa
atctcgttgtaacaatatatttttcagtttgtatttatatatcttaaaac
ttatatatgtctatatatcttaaatcactttgagacccttagaacttact
taagtttttacacctttagactttgtgtggattttggatcatttttttaa
aaatctaatcatttaccagaaacataggaagttatggttgagatcagtaa
ttgtggaacatgttctttcagtgtaaagatgtaactgaaacctgtttatc
ctttatgatgaagcctaaggacaaagtaaacatggctgccttttcttcac
aagagtaataatatctttagttacctaatgagctgacacagtacagtagc
tgtagccttgggagaagaagctgatcgtctactattgcctaactgacaaa
gctacagttagtcttgctatacagatcatgtgttaataaatgcattaaaa
taaaaatatcggataaattttaaatattccatagttttataaatttaatc
attttaaaggctgtttttaaaatacctagtttttagttttctgtaaaaac
caaagattgttggagtaatgtctttgtgcagtgtaaagattatccttgta
tttacatcctgattactacataagcagtactggtattgtttgtatttttt
atttagcatcacctatctcagagttttgtaaacattcttctctatcacct
tctgactgatcagtagtttacagcaaattagctgggcagaagagaatagt
ttag
gaattcccagaactgaaggtttcatttggtggagagaaatgtcttgtgga
ggttttgcctttcttgatatttggtgacttaatttagatttcttttatat
atgtgtgaacatttagatttcttttatatatgtgtgtatatttagatttc
ttttatatgtgtgtgtatattttaagacgcttttattgtattaggtttct
atgtgactcttcaaatcacatcttgcgctgaattccttcatacatctgta
gttgagttttgtcctgggtagtgcatacaaatctatttccatgtttctgt
atgtagccatccactttgccttcttaggaactttcttcattgtgattcat
tctatgcttttcctgagaaaattatgtctgagtctttttagaaaagtatc
tatcccttttgcttttaaagaaataactttatctagcactattgtgaagt
tttccttatgccatggagatcattcaacacagataagcacatagctagat
gaggcaattactccatgaatcttcttatgacatcagctcctgggctaact
caaacaatataattggtgcaaggtaaacagaaaaaattgacaaactcaga
tgggcaacgagaaaaggttacagattcaagtcttctttttgttctaactt
agcgctctctggaaatatattttaaagaactctggggtcgccccggggta
cctcgccagtggagtcgcccgacacccgcaagggcccacacaggattccc
caggggatcctaagaccttttggtgagtggaacacagtgcctgccccaat
ccaatcgcatggaacctgagttgtggtaaatagggaagcagactacccgg
gcctgacctggggcacaagccccttccactccactcgagccccagggtac
ctcaccagcggagtcgcccgacacctcagggcccacacaggattcacacg
ggatcctaagacctctagtgagtggaacacacttctgccaggaggtcggt
tgaacaccagatatctgggtaccttccctgcaagacgaaggcttgcctgc
aaggagtacccgtgcccactcaactcgagaagagctaccttccaggttgc
ttatagaggctacaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_14185474_14186528
seq2: B6Ng01-113I06.b_48_1101

seq1  GAATTCATTTGACCTCTGACAGGTAGATCCAAGTCTTATGATTTCTTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTGACCTCTGACAGGTAGATCCAAGTCTTATGATTTCTTTAA  50

seq1  TTCTGCAAAACTAACATAATTTTTTTTTCATCAAAGAAGATAAAAGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAAAACTAACATAATTTTTTTTTCATCAAAGAAGATAAAAGCTTA  100

seq1  AGATATATTAGCATTCTGATTGTATTGAAATTCATATTGTACATTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATATTAGCATTCTGATTGTATTGAAATTCATATTGTACATTAAAAA  150

seq1  GTCATTTAACAGACGTCTGTAAAATAGATAAAACATATTTAACCAAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTAACAGACGTCTGTAAAATAGATAAAACATATTTAACCAAAGGG  200

seq1  AATTTAAAACCTTTAGTTTTTTTACTGAATAGTAAGTAGTGAGTATCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAACCTTTAGTTTTTTTACTGAATAGTAAGTAGTGAGTATCCTG  250

seq1  CCAGTTTATCAGAATTCCATTTATGAGTATAAAAACATTGAACCTTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTATCAGAATTCCATTTATGAGTATAAAAACATTGAACCTTTAAA  300

seq1  ATCTCGTTGTAACAATATATTTTTCAGTTTGTATTTATATATCTTAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGTTGTAACAATATATTTTTCAGTTTGTATTTATATATCTTAAAAC  350

seq1  TTATATATGTCTATATATCTTAAATCACTTTGAGACCCTTAGAACTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATGTCTATATATCTTAAATCACTTTGAGACCCTTAGAACTTACT  400

seq1  TAAGTTTTTACACCTTTAGACTTTGTGTGGATTTTGGATCATTTTTTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTTTACACCTTTAGACTTTGTGTGGATTTTGGATCATTTTTTTAA  450

seq1  AAATCTAATCATTTACCAGAAACATAGGAAGTTATGGTTGAGATCAGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTAATCATTTACCAGAAACATAGGAAGTTATGGTTGAGATCAGTAA  500

seq1  TTGTGGAACATGTTCTTTCAGTGTAAAGATGTAACTGAAACCTGTTTATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAACATGTTCTTTCAGTGTAAAGATGTAACTGAAACCTGTTTATC  550

seq1  CTTTATGATGAAGCCTAAGGACAAAGTAAACATGGCTGCCTTTTCTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATGATGAAGCCTAAGGACAAAGTAAACATGGCTGCCTTTTCTTCAC  600

seq1  AAGAGTAATAATATCTTTAGTTACCTAATGAGCTGACACAGTACAGTAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAATAATATCTTTAGTTACCTAATGAGCTGACACAGTACAGTAGC  650

seq1  TGTAGCCTTGGGAGAAGAAGCTGATCGTCTACTATTGCCTAACTGACAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCCTTGGGAGAAGAAGCTGATCGTCTACTATTGCCTAACTGACAAA  700

seq1  GCTACAGTTAGTCTTGCTATACAGATCATGTGTTAATAAATGCATTAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTTAGTCTTGCTATACAGATCATGTGTTAATAAATGCATTAAAA  750

seq1  TAAAAATATCGGATAAATTTTAAATATTCCATAGTTTTATAAATTTAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATATCGGATAAATTTTAAATATTCCATAGTTTTATAAATTTAATC  800

seq1  ATTTTAAAGGCTGTTTTTAAAATACCTAGTTTTTAGTTTTCTGTAAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAAGGCTGTTTTTAAAATACCTAGTTTTTAGTTTTCTGTAAAAAC  850

seq1  CAAAGATTGTTGGAGTAATGTCTTTGTGCAGTGTAAAGATTATCCTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTGTTGGAGTAATGTCTTTGTGCAGTGTAAAGATTATCCTTGTA  900

seq1  TTTACATCCTGATTACTACATAAGCAGTACTGGTATTGTTTGTTATTTTT  950
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  TTTACATCCTGATTACTACATAAGCAGTACTGGTATTGTTTGTATTTTTT  950

seq1  ATTTAGCATCACCTATCTCAGAGTTTTGTAAACATTCTTCTCTATCACCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGCATCACCTATCTCAGAGTTTTGTAAACATTCTTCTCTATCACCT  1000

seq1  TCTGACTGATCAGTAGTTTACCAGCAAATTAGCTGGGCAGAAGAGAATAG  1050
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTGACTGATCAGTAGTTTA-CAGCAAATTAGCTGGGCAGAAGAGAATAG  1049

seq1  TTTAG  1055
      |||||
seq2  TTTAG  1054

seq1: chr3_14310301_14311425
seq2: B6Ng01-113I06.g_70_1185 (reverse)

seq1  TCTGTTAGCCTCTATAAGCAGACCTGGGAGGGTAGCTCTCTCCTTAGTTT  50
      |||| ||||||||||||||| |||| ||| ||||||||| ||   || ||
seq2  TCTG-TAGCCTCTATAAGCA-ACCT-GGAAGGTAGCTCT-TCTCGAG-TT  45

seq1  GAGTGGGCA-GAGTACTCTCTGCAGGCAAGCTCTCGTCTTGCAGGGAAGG  99
      ||||||||| | ||||||  |||||||||||  |||||||||||||||||
seq2  GAGTGGGCACGGGTACTCCTTGCAGGCAAGCCTTCGTCTTGCAGGGAAGG  95

seq1  TACCCAGATATCTGGTGTTCAAACCGACCTCCTGGCAGAAGTTGTGTTCC  149
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  TACCCAGATATCTGGTGTTC-AACCGACCTCCTGGCAGAAG-TGTGTTCC  143

seq1  ACTCACTAGAGGTCTTAGGATCCCGTGTGGAATCCTGTGTGGGCCCTTGA  199
      |||||||||||||||||||||||||||| ||||||||||||||||| |||
seq2  ACTCACTAGAGGTCTTAGGATCCCGTGT-GAATCCTGTGTGGGCCC-TGA  191

seq1  GGGTGTCGGGCGACTCCGCTGGTGAGGTACCCTGGGGCTCGAGTGGAGTG  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GGTGTCGGGCGACTCCGCTGGTGAGGTACCCTGGGGCTCGAGTGGAGTG  240

seq1  GAAGGGGCTTGTGCCCCAGGTCAGGCCCGGGTAGTCTGCTTCCCTATTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGCTTGTGCCCCAGGTCAGGCCCGGGTAGTCTGCTTCCCTATTTA  290

seq1  CCACAATCTCAGGTTCCATGCGATTGGATTGGGGCAGGCACTGTGTTCCA  349
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAA-CTCAGGTTCCATGCGATTGGATTGGGGCAGGCACTGTGTTCCA  339

seq1  CTCACC-AAAGGTCTTAGGATCCCCTGGGGAATCCTGTGTGGGCCCTTGC  398
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCAAAAGGTCTTAGGATCCCCTGGGGAATCCTGTGTGGGCCCTTGC  389

seq1  GGGTGTCGGGCGACTCCACTGGCGAGGTACCCCGGGGCGACCCCAGAGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTCGGGCGACTCCACTGGCGAGGTACCCCGGGGCGACCCCAGAGTT  439

seq1  CTTTAAAATATATTTCCAGAGAGCGCTAAGTTAGAACAAAAAGAAGACTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAATATATTTCCAGAGAGCGCTAAGTTAGAACAAAAAGAAGACTT  489

seq1  GAATCTGTAACCTTTTCTCGTTGCCCATCTGAGTTTGTCAATTTTTTCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTGTAACCTTTTCTCGTTGCCCATCTGAGTTTGTCAATTTTTTCTG  539

seq1  TTTACCTTGCACCAATTATATTGTTTGAGTTAGCCCAGGAGCTGATGTCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTGCACCAATTATATTGTTTGAGTTAGCCCAGGAGCTGATGTCA  589

seq1  TAAGAAGATTCATGGAGTAATTGCCTCATCTAGCTATGTGCTTATCTGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAGATTCATGGAGTAATTGCCTCATCTAGCTATGTGCTTATCTGTG  639

seq1  TTGAATGATCTCCATGGCATAAGGAAAACTTCACAATAGTGCTAGATAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGATCTCCATGGCATAAGGAAAACTTCACAATAGTGCTAGATAAA  689

seq1  GTTATTTCTTTAAAAGCAAAAGGGATAGATACTTTTCTAAAAAGACTCAG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCTTTAAAAGCAAAAGGGATAGATACTTTTCTAAAAAGACTCAG  739

seq1  ACATAATTTTCTCAGGAAAAGCATAGAATGAATCACAATGAAGAAAGTTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATTTTCTCAGGAAAAGCATAGAATGAATCACAATGAAGAAAGTTC  789

seq1  CTAAGAAGGCAAAGTGGATGGCTACATACAGAAACATGGAAATAGATTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGAAGGCAAAGTGGATGGCTACATACAGAAACATGGAAATAGATTTG  839

seq1  TATGCACTACCCAGGACAAAACTCAACTACAGATGTATGAAGGAATTCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACTACCCAGGACAAAACTCAACTACAGATGTATGAAGGAATTCAG  889

seq1  CGCAAGATGTGATTTGAAGAGTCACATAGAAACCTAATACAATAAAAGCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCAAGATGTGATTTGAAGAGTCACATAGAAACCTAATACAATAAAAGCG  939

seq1  TCTTAAAATATACACACACATATAAAAGAAATCTAAATATACACACATAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATATACACACACATATAAAAGAAATCTAAATATACACACATAT  989

seq1  ATAAAAGAAATCTAAATGTTCACACATATATAAAAGAAATCTAAATTAAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGAAATCTAAATGTTCACACATATATAAAAGAAATCTAAATTAAG  1039

seq1  TCACCAAATATCAAGAAAGGCAAAACCTCCACAAGACATTTCTCTCCACC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAATATCAAGAAAGGCAAAACCTCCACAAGACATTTCTCTCCACC  1089

seq1  AAATGAAACCTTCAGTTCTGGGAATTC  1125
      |||||||||||||||||||||||||||
seq2  AAATGAAACCTTCAGTTCTGGGAATTC  1116