BAC Information

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BAC

Clone NameB6Ng01-113I14
Chromosome3 (Build37)
Map Location 52,645,854 - 52,790,349
singlet/doubletdoublet
Overlap geneCog6
Upstream geneMaml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1, LOC100039762, LOC100039832
Downstream geneLhfp, LOC100039808, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113I14.bB6Ng01-113I14.g
ACCDH919306DH919307
length1,1101,073
definitionDH919306|Mus musculus domesticus DNA, BAC clone: B6Ng01-113I14, 5' end.DH919307|Mus musculus domesticus DNA, BAC clone: B6Ng01-113I14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,645,854 - 52,646,958)(52,789,263 - 52,790,349)
sequence
gaattcactctggaggccaagctggccttgaacttagagatccacctgcc
tcctcaacgctggagtgcaccactacagtcccactgcaagaagactctta
tataaaatagcttaatgtttgtgcatagcctaggtccacccccctgaaca
cttcagattaatctagaacagtacaatatccaacccattgcaagcatggt
gaatagttgtacgaaatgtttagagaattgtgacaagataaaaggtttga
atgtaactctggtggtgtgacatcttcccagtgagtctggaatttagtct
gaaagccattcagtgagggatggaaagaacgatacagagttcaggcaaac
gtggatgccgtttgagtagaattgcttgtgcatcctcgttgggggctggc
ctctgccctaagtcaattctattgatgatacttgtgcacttatcagaaat
actcccttctccctcaagagactttatatctgaaacacagatgtattttt
ttaaaatccaccacttgaagtattgtcaacagacccacagaattctacca
tgtattttccagttcattgtccaataccaaccctgagtgccaagtgggaa
aggctggcatttttgtcattattcattgtggaaggaagggctccgtttgc
tcggcaggaggtgaaagttttggtttccatcttctaagaggatagagggg
aaaggtcgtgggcagacgagccagtgggatggctgcgcatgttcttgatg
ttgaggatacacagcagagtggaatgacattggctgtgaactagtgaaga
ggtgttgtctgggagcaccagaaaggtgccgctgcctccggcaagcaatg
acgatgtgagcactggattccagagcccttgccttgcttccagcctaagt
ggggaccacttgaatgcctcaagaattagaattattgtcattacgtcgca
caaatgcttctactttctgtttgcttgattctggctttggtcaggaatat
tgggacgcctctctttaaccagcttactggttctcttgcagcttgttaat
taaaaaggtcatgataaggtgttgacctcctgcctccctgcagaggaaag
aagggagctg
gaattcccttctcagtgccacagtgaagtaagtgtctgctcccaggatag
gggaaatgcatacacctttaaatatcaaataatcttcttaaaaatacaat
atttttaagactgagatacttgcctttgaagaactatagtcttcaatact
ttacctgccttagtaccccaaagaattaaccttagccatacttactcctt
gcctatatttcccttcaatctctctcattaatatataatcttactttgct
aatgattttaaattgctctgactataattgaagtcaaatagacatgacac
caaatccctatatattgtaagcaagtcaaggcagtgttgataattttgac
catgtcctacatattttgcagtgtagatgactgtcttatggtctactttg
catctgtttttctgtagatttaaagctattaaatattgtacatgtctcct
taatttagagtggggatacagtgtggtaaactcatctgaagttaaaattc
agttaatggatagtttggaacatagcacacatggatccatactagcatgg
tgacagggcacagcttgcagctgcctggtgtaagagagtacagcagtaag
aagacaaggaggttggagcttcagcagtgaggtggcagggaggcggggct
ccagcagggaggagacagggaggcggggctccagcagggaggagacaggg
aggcggggctccagcagggaggagacagggaggcggggctccagcaggga
ggagacagggaggcggggcttcagcagtgaggaggcagggaggcggggct
ccagcaggaggagacagggaggcggggctccagcagggagtccctctgtg
tgcacagtgctctactggaacttgtttgtcccaagttttatctttcaaca
gagagtttgattggacatttggtcttgaaggaactactaagcagtatact
atacgggaccagaagtctaagacataggagagaatagaaaatgaatggtt
taagatgtttcctttccctttggataataaacgatgttactctctttgcc
gccagacgcagtgattaccttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_52645854_52646958
seq2: B6Ng01-113I14.b_48_1157

seq1  GAATTCACTCTGGAGGCCAAGCTGGCCTTGAACTTAGAGATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGGAGGCCAAGCTGGCCTTGAACTTAGAGATCCACCTGCC  50

seq1  TCCTCAACGCTGGAGTGCACCACTACAGTCCCACTGCAAGAAGACTCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAACGCTGGAGTGCACCACTACAGTCCCACTGCAAGAAGACTCTTA  100

seq1  TATAAAATAGCTTAATGTTTGTGCATAGCCTAGGTCCACCCCCCTGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAGCTTAATGTTTGTGCATAGCCTAGGTCCACCCCCCTGAACA  150

seq1  CTTCAGATTAATCTAGAACAGTACAATATCCAACCCATTGCAAGCATGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGATTAATCTAGAACAGTACAATATCCAACCCATTGCAAGCATGGT  200

seq1  GAATAGTTGTACGAAATGTTTAGAGAATTGTGACAAGATAAAAGGTTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTTGTACGAAATGTTTAGAGAATTGTGACAAGATAAAAGGTTTGA  250

seq1  ATGTAACTCTGGTGGTGTGACATCTTCCCAGTGAGTCTGGAATTTAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAACTCTGGTGGTGTGACATCTTCCCAGTGAGTCTGGAATTTAGTCT  300

seq1  GAAAGCCATTCAGTGAGGGATGGAAAGAACGATACAGAGTTCAGGCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCCATTCAGTGAGGGATGGAAAGAACGATACAGAGTTCAGGCAAAC  350

seq1  GTGGATGCCGTTTGAGTAGAATTGCTTGTGCATCCTCGTTGGGGGCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGCCGTTTGAGTAGAATTGCTTGTGCATCCTCGTTGGGGGCTGGC  400

seq1  CTCTGCCCTAAGTCAATTCTATTGATGATACTTGTGCACTTATCAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCCTAAGTCAATTCTATTGATGATACTTGTGCACTTATCAGAAAT  450

seq1  ACTCCCTTCTCCCTCAAGAGACTTTATATCTGAAACACAGATGTATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTTCTCCCTCAAGAGACTTTATATCTGAAACACAGATGTATTTTT  500

seq1  TTAAAATCCACCACTTGAAGTATTGTCAACAGACCCACAGAATTCTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCCACCACTTGAAGTATTGTCAACAGACCCACAGAATTCTACCA  550

seq1  TGTATTTTCCAGTTCATTGTCCAATACCAACCCTGAGTGCCAAGTGGGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTCCAGTTCATTGTCCAATACCAACCCTGAGTGCCAAGTGGGAA  600

seq1  AGGCTGGCATTTTTGTCATTATTCATTGTGGAAGGAAGGGCTCCGTTTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGCATTTTTGTCATTATTCATTGTGGAAGGAAGGGCTCCGTTTGC  650

seq1  TCGGCAGGAGGTGAAAG-TTTGGTTTCCATCTTCTAAGAGGATAGAGGGG  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCGGCAGGAGGTGAAAGTTTTGGTTTCCATCTTCTAAGAGGATAGAGGGG  700

seq1  AAAGGTCGTGGGCAGACGAGCCAGTGGGATGGCTGCGCATGTTCTTGATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCGTGGGCAGACGAGCCAGTGGGATGGCTGCGCATGTTCTTGATG  750

seq1  TTGAGGATACACAGCAGAGTGGAAGGACATTGGCTGTGAACTAGTGAAGA  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TTGAGGATACACAGCAGAGTGGAATGACATTGGCTGTGAACTAGTGAAGA  800

seq1  GGTGTTGTCTGGAAGCACCAGAAGGTTGCCGCTGCCTCCGGCAAGCAATG  849
      |||||||||||| |||||||||| | ||||||||||||||||||||||||
seq2  GGTGTTGTCTGGGAGCACCAGAAAGGTGCCGCTGCCTCCGGCAAGCAATG  850

seq1  ACGATGTGAGCACTGGAATCCAGAGCCC-TGCCTTGCTTCCAGCCTAAAG  898
      ||||||||||||||||| |||||||||| ||||||||||||||||| |||
seq2  ACGATGTGAGCACTGGATTCCAGAGCCCTTGCCTTGCTTCCAGCCT-AAG  899

seq1  TGGGGA-CACATTGATGCCTCAAGAATTAGAATTATTGTCATTACGTCGC  947
      |||||| ||| |  ||||||||||||||||||||||||||||||||||||
seq2  TGGGGACCACTTGAATGCCTCAAGAATTAGAATTATTGTCATTACGTCGC  949

seq1  ACAAATGCTTCTAC-TTCTGTTTGCTTTGATTCTTGGCTTTGGTCAGGAT  996
      |||||||||||||| |||||||||| ||||||| ||||||||||||||| 
seq2  ACAAATGCTTCTACTTTCTGTTTGC-TTGATTC-TGGCTTTGGTCAGGAA  997

seq1  ATTTGGGACGCCTCTCTTTAAACAGCTTACATGATCTCTGTCAGCTTGTT  1046
        ||||||||||||||||||| ||||||||  | |||||  |||||||||
seq2  TATTGGGACGCCTCTCTTTAACCAGCTTACTGGTTCTCTTGCAGCTTGTT  1047

seq1  ACATAAAAAGG-CATGA-AAGGTTGTGAACTCCTGCCT-CCTGCAAGAGG  1093
      |  |||||||| ||||| |||||  ||| ||||||||| ||||| |||||
seq2  AATTAAAAAGGTCATGATAAGGTGTTGACCTCCTGCCTCCCTGC-AGAGG  1096

seq1  -AAGAA-GGAGCTG  1105
       ||||| |||||||
seq2  AAAGAAGGGAGCTG  1110

seq1: chr3_52789263_52790349
seq2: B6Ng01-113I14.g_68_1140 (reverse)

seq1  TCAAGGTGATCACTGCGTCTGGCAGCAAAGAGAGTAACATCGTTCTAATT  50
      ||||||| ||||||||||||||| |||||||||||||||||||| ||  |
seq2  TCAAGGTAATCACTGCGTCTGGCGGCAAAGAGAGTAACATCGTT-TA--T  47

seq1  TATCCAAAGGGAAAAGAAAACATCTTTAAAACCATTCATTTTTCTATTTC  100
      ||||||||||| |||| |||||||||  |||||||||| ||||||| |||
seq2  TATCCAAAGGG-AAAGGAAACATCTT--AAACCATTCA-TTTTCTA-TTC  92

seq1  TCTCCCTATGTTCTAGACTTCTTGGTCCCGTATAAGTATATCTGCTTAGT  150
      ||| |||||||  |||||||| ||||||||||| |||||| |||||||||
seq2  TCT-CCTATGTCTTAGACTTC-TGGTCCCGTAT-AGTATA-CTGCTTAGT  138

seq1  AGTTTCCTTCAAGACCAAATGTCCAATCAAACTCTCTGTTGAAAGATAAA  200
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-TTCCTTCAAGACCAAATGTCCAATCAAACTCTCTGTTGAAAGATAAA  187

seq1  ACTTGGGACAAACAAGTTCCAGTAGAGCACTGTGCACACAGAGGGACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGACAAACAAGTTCCAGTAGAGCACTGTGCACACAGAGGGACTCC  237

seq1  CTGCTGGAGCCCCGCCTCCCTGTCTCCTCCCTGCTGGAGCCCCGCCTCCC  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CTGCTGGAGCCCCGCCTCCCTGTCTCCT-CCTGCTGGAGCCCCGCCTCCC  286

seq1  TGCCTCCTCACTGCTGAAGCCCCGCCTCCCTGTCTCCTCCCTGCTGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCTCACTGCTGAAGCCCCGCCTCCCTGTCTCCTCCCTGCTGGAGC  336

seq1  CCCGCCTCCCTGTCTCCTCCCTGCTGGAGCCCCGCCTCCCTGTCTCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTCCCTGTCTCCTCCCTGCTGGAGCCCCGCCTCCCTGTCTCCTCC  386

seq1  CTGCTGGAGCCCCGCCTCCCTGTCTCCTCCCTGCTGGAGCCCCGCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGAGCCCCGCCTCCCTGTCTCCTCCCTGCTGGAGCCCCGCCTCCC  436

seq1  TGCCACCTCACTGCTGAAGCTCCAACCTCCTTGTCTTCTTACTGCTGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTCACTGCTGAAGCTCCAACCTCCTTGTCTTCTTACTGCTGTAC  486

seq1  TCTCTTACACCAGGCAGCTGCAAGCTGTGCCCTGTCACCATGCTAGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTACACCAGGCAGCTGCAAGCTGTGCCCTGTCACCATGCTAGTATG  536

seq1  GATCCATGTGTGCTATGTTCCAAACTATCCATTAACTGAATTTTAACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCATGTGTGCTATGTTCCAAACTATCCATTAACTGAATTTTAACTTC  586

seq1  AGATGAGTTTACCACACTGTATCCCCACTCTAAATTAAGGAGACATGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTTTACCACACTGTATCCCCACTCTAAATTAAGGAGACATGTAC  636

seq1  AATATTTAATAGCTTTAAATCTACAGAAAAACAGATGCAAAGTAGACCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTAATAGCTTTAAATCTACAGAAAAACAGATGCAAAGTAGACCAT  686

seq1  AAGACAGTCATCTACACTGCAAAATATGTAGGACATGGTCAAAATTATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAGTCATCTACACTGCAAAATATGTAGGACATGGTCAAAATTATCA  736

seq1  ACACTGCCTTGACTTGCTTACAATATATAGGGATTTGGTGTCATGTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCCTTGACTTGCTTACAATATATAGGGATTTGGTGTCATGTCTAT  786

seq1  TTGACTTCAATTATAGTCAGAGCAATTTAAAATCATTAGCAAAGTAAGAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTTCAATTATAGTCAGAGCAATTTAAAATCATTAGCAAAGTAAGAT  836

seq1  TATATATTAATGAGAGAGATTGAAGGGAAATATAGGCAAGGAGTAAGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTAATGAGAGAGATTGAAGGGAAATATAGGCAAGGAGTAAGTAT  886

seq1  GGCTAAGGTTAATTCTTTGGGGTACTAAGGCAGGTAAAGTATTGAAGACT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAAGGTTAATTCTTTGGGGTACTAAGGCAGGTAAAGTATTGAAGACT  936

seq1  ATAGTTCTTCAAAGGCAAGTATCTCAGTCTTAAAAATATTGTATTTTTAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCTTCAAAGGCAAGTATCTCAGTCTTAAAAATATTGTATTTTTAA  986

seq1  GAAGATTATTTGATATTTAAAGGTGTATGCATTTCCCCTATCCTGGGAGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTATTTGATATTTAAAGGTGTATGCATTTCCCCTATCCTGGGAGC  1036

seq1  AGACACTTACTTCACTGTGGCACTGAGAAGGGAATTC  1087
      |||||||||||||||||||||||||||||||||||||
seq2  AGACACTTACTTCACTGTGGCACTGAGAAGGGAATTC  1073