BAC Information

Click to search

BAC

Clone NameB6Ng01-113K16
Chromosome3 (Build37)
Map Location 79,442,400 - 79,442,936
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik
Downstream geneRxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113K16.bB6Ng01-113K16.g
ACCDH919402DH919403
length1,0311,099
definitionDH919402|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K16, 5' end.DH919403|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tctggagtccaccctcttgagttctttatatatattggatattagtcccc
tatctgatttaagataggtaaagatcctttccaaatctgttggtggcctt
tttgtcttattgacggtgtcttttgccttgcagaagctttgccgtttcat
gaggtcccatttgtcaatcctcgatcttacagcacaagccattgctgttc
tattcaggaatttttcccctgtgcccatattttcgaggcttttccccact
ttctcctctataagtttcagtgtctctggttttatgtgaagttccttgat
ccacttaaatttgaccttagtacaaggagataggaatggattgattcgag
ttcttctacatgataacaaacagttgtgctagcaccatttgttgaaaatg
ctgtctttcttccactggatggtttagctcccttgtcgaagatcaagtga
ccataggtgtgtgggttcatttctgggtcttcaattctattccattgttc
tacttgtctgtccctataccagtaccatgcagtttttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagttttttgctatcctaggttttttgttattccagat
gaatttgctgattgctctttctaattcattgaagaattgagttggaattt
tgatggggattgcattgaatctgtagattgcttttggcaagatagccatt
tttacatgttgatcctgccaatccatgagcatgggagatctttcaatctt
ctgatatatttaatttctttcttcagagacttgaagtttttatcatacag
atctttcacttccttggtttagagtcacgccaagatattttatattattt
gtgactatgagatttcctttctcagcctgttattctttgtttaagagaaa
ggccatgactggttgaggtaattttatatca
gaattcttcactccagttcagcaggaagcaattataagaagactgttgtt
ccagccccttaagttggcgtggatggttttggttgttttatgaattatag
ctatgttgtcatcttagggaatgctttacaaataattttggtcttgtaca
ggaaggaaatgaaatggagagcttaatctcaggatttctatctttccttt
tttctctatcctttctcaggtaaagagaagggggtgaataaaaggggaat
atagtactattataagaaattagacaaatagggatggattattaaacatt
atctttgcattttgatgcaaaattaaagttacatattcttacattgatac
aatttatatattgatacagatttaaaattaatttgttatatttgtatgtt
ttaacttctgtataggtattatacctatacaactcattttaaaataccag
gtttagtctcagtccttttaatgactgcttttacaaactgtttaaaataa
taaaggttaatagacagtcaaactcatggtcatatcagattattagtctt
ggatcaacacttaaatatacatcctgggttgtacagatagcagctgggag
gcagacaacattcacttgttcagatatgctatgaatagatagatggtctt
taaaaaatcttggagacccaaagaatatggcatttaaagatactttttat
taatgtaaggcttttttgagattgagacatgtcagctactggcagcaccc
cattcaacttggaaaagatgataagcatcaaaagacccccatatggagtt
gcttcaattgtagcaagctagccaatggtcaaagaaaacgtactatattt
tatcttcacagagaatgctgttcagaaaggacgaacagatgcagggaagt
caattgccaagctccgcaagatagggtagcaagtccttcataatttctga
ttgcaaaaggctgttagatatttgggacagactctgagaataaatacttc
aatgtataaagaaaattggggtacatctatgttgtcagctggtcactatt
tctaaattttatgggagctgtgtacatggtgcttttctaataacgtaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79442400_79442936
seq2: B6Ng01-113K16.b_561_1077 (reverse)

seq1  GATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTC-TACACAAAGAA  49
      |||||||||||| ||| ||| |||| |||||||||||| || ||||||||
seq2  GATATAAAATTACCTC-AACCAGTC-ATGGCCTTTCTCTTAAACAAAGAA  48

seq1  TAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGCCA  99
      | ||||||||||||||        |||||         |||| |||| ||
seq2  T-AACAGGCTGAGAAA--------GGAAA---------TCTC-ATAGTCA  79

seq1  CAAATAATATAAAATATCTCGGCGTGACTCT-AACGAAGGAAGTGAAAGA  148
      ||||||||||||||||||| ||||||||||| ||| ||||||||||||||
seq2  CAAATAATATAAAATATCTTGGCGTGACTCTAAACCAAGGAAGTGAAAGA  129

seq1  TCTGTATGATAAAAACTTCAAGTCCCTGAAGAAAGAAATTAAAGAAGATC  198
      |||||||||||||||||||||||| ||||||||||||||||   || || 
seq2  TCTGTATGATAAAAACTTCAAGTCTCTGAAGAAAGAAATTA---AATATA  176

seq1  TCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGACCAACATT  248
      ||||||||| |||||||||||||||||||||||||||||||| ||||| |
seq2  TCAGAAGATTGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACA-T  225

seq1  GTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCC  275

seq1  CATTAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGCAATTTGCA  348
      ||| ||||||||||||||||||||||| ||||||||| |||||||  |||
seq2  CATCAAAATTCCAACTCAATTCTTCAATGAATTAGAAAGAGCAATCAGCA  325

seq1  AATTCATCTGGAATAACAAAAAACCGAGGATAGC-AAAAACTCTTCTCAA  397
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  AATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAAACTCTTCTCAA  375

seq1  GGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACT  425

seq1  ACAGAGCAATTGTGAT--AAAAACTGCATGGTACTGGTATAGAGACAGAC  495
      ||||||||||||||||  |||||||||||||||||||||||| |||||||
seq2  ACAGAGCAATTGTGATAAAAAAACTGCATGGTACTGGTATAGGGACAGAC  475

seq1  AAGTGGACCAATGGAATAGAATTGAAGACCCAGAAATGAACC  537
      |||| || ||||||||||||||||||||||||||||||||||
seq2  AAGTAGAACAATGGAATAGAATTGAAGACCCAGAAATGAACC  517