BAC Information

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BAC

Clone NameB6Ng01-113L06
Chromosome3 (Build37)
Map Location 119,443,179 - 119,444,273
singlet/doubletsinglet
Overlap genePtbp2
Upstream geneDpyd, LOC100043275, LOC100043278
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113L06.bB6Ng01-113L06.g
ACCDH919428DH919429
length3461,075
definitionDH919428|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L06, 5' end.DH919429|Mus musculus domesticus DNA, BAC clone: B6Ng01-113L06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcaggatacaatgcacagaactcaagaagactaacaagccatagggccca
agtgaggaccacttgggagggagaagaaagcgatcacaggagcagggagg
gaaggacctgggtgggaaaggtgggtgataggaaggggtacaggggaaca
tgatcaggtattgagggaggggaacaggactgaagccctgagggccagca
gaaagaatgaaaccaggcaaccttgggggtaggaggtatggtgggaccct
ctagaatgtaccttagacctgtgaggtgaaaggctcatacaactcaaatg
tagggagcttagatgaaatgccctatggggtgtaagagaacttgta
gaattccaatcttaatatacttaagcaaatatagatgtttacttttccat
taataagacctttttattcttctgatgaaaagtaatattatgttcccatt
tatattttttcctatatgctttgttggactagaaataattgatatacaga
gcaaaaacctataatcatagtcaataattcatgataaacttccacatgta
tggtcttttatttagttcccatagcaacctttaaggaaatttgttgaccc
ttattcctactttctatatttctacaataatactcaaaattagtagtggt
ctaacagtgatgtcattaagtctagacttttaactgtagatagcactctt
ttctattccagaatttcctggaatgataattggcttttctaatttcatca
agatattctgattcaggcccaacagttcatcttaaggaagtacttgttct
tacttcatttcatggcaattgttacacattttggggctgcatttctttgt
ataaggcaacttcctacagtgtggtatccaggaggagttgaatcagctca
ttttagtgttaccattagggctgactgtgtgtgtgactgttatcagtttg
tttgcttgttgtttttattttaggctgttttacagctttttattttattt
aaaagtgttatattgatgatgaaatggttatattttagagttaaatagca
ttgcctacttaaggaaggcagtgagtggtagaaactaacacatttagaac
agtaccatggcttgatatgtgaaattttaatccttttcctgttttgctaa
ttttcaatttatgtggctgatatattttattcacttttacaggccctaga
tggtcaaaatatttataatgcttgctgtaccctaaggattgatttttcca
aacttgtgaatttgaatgtaaaatacacaatgataaaagtagggatatac
tcgacctgatctgcatctggagacgcagcctgcgttagacccagcatgct
gcagcatttgccagagacatccctactagtagacttactgtctgtagcac
ctttctcattgctctctgcaagtgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_119443179_119444273
seq2: B6Ng01-113L06.g_67_1141 (reverse)

seq1  GCACTTTCCCAGAGAGCAATGGAGGAAAGGTGCTACAGACAGTAAAAGTC  50
      ||||||   ||||||||||||   |||||||||||||||||||  |||| 
seq2  GCACTT--GCAGAGAGCAATG--AGAAAGGTGCTACAGACAGT--AAGT-  43

seq1  CTACCTAGTAGGGATGTCTCCTTGGCAAATGCTGCAGCAATGGCTGGGTC  100
      ||| ||||||||||||||||  |||||||||||||||||   ||||||||
seq2  CTA-CTAGTAGGGATGTCTC--TGGCAAATGCTGCAGCA--TGCTGGGTC  88

seq1  TAACGCAGGCTGGCCGTCTCCAGATGGCAGATCAGGTCGAGTATAATCCC  150
      ||||||||||||  ||||||||||| |||||||||||||||||| |||||
seq2  TAACGCAGGCTG--CGTCTCCAGAT-GCAGATCAGGTCGAGTAT-ATCCC  134

seq1  TACTTTTATCATTGTTGTATTTTACATTCAAATTCACAAGTTTGGAAAAA  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TACTTTTATCATTG-TGTATTTTACATTCAAATTCACAAGTTTGGAAAAA  183

seq1  TCAATCCTTAGGGTACAGCAAGCATTATAAATATTTTGACCATCTAGGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCCTTAGGGTACAGCAAGCATTATAAATATTTTGACCATCTAGGGC  233

seq1  CTGTAAAAGTGAATAAAATATATCAGCCATCATAAATTTGAAAATTAGCA  300
      ||||||||||||||||||||||||||||| |||||| |||||||||||| 
seq2  CTGTAAAAGTGAATAAAATATATCAGCCA-CATAAA-TTGAAAATTAGC-  280

seq1  AAAACAGGAAAAGGATTAAAATTTCACATATCAAGCCATGGTACTGTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGAAAAGGATTAAAATTTCACATATCAAGCCATGGTACTGTTCT  330

seq1  AAATGTGTTAGTTTCTACCACTCACTGCCTTCCTTAAGTAGGCAATGCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGTTAGTTTCTACCACTCACTGCCTTCCTTAAGTAGGCAATGCTA  380

seq1  TTTAACTCTAAAATATAACCATTTCATCATCAATATAACACTTTTAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTCTAAAATATAACCATTTCATCATCAATATAACACTTTTAAATA  430

seq1  AAATAAAAAGCTGTAAAACAGCCTAAAATAAAAACAACAAGCAAACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAAGCTGTAAAACAGCCTAAAATAAAAACAACAAGCAAACAAAC  480

seq1  TGATAACAGTCACACACACAGTCAGCCCTAATGGTAACACTAAAATGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACAGTCACACACACAGTCAGCCCTAATGGTAACACTAAAATGAGC  530

seq1  TGATTCAACTCCTCCTGGATACCACACTGTAGGAAGTTGCCTTATACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCAACTCCTCCTGGATACCACACTGTAGGAAGTTGCCTTATACAAA  580

seq1  GAAATGCAGCCCCAAAATGTGTAACAATTGCCATGAAATGAAGTAAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCAGCCCCAAAATGTGTAACAATTGCCATGAAATGAAGTAAGAAC  630

seq1  AAGTACTTCCTTAAGATGAACTGTTGGGCCTGAATCAGAATATCTTGATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTCCTTAAGATGAACTGTTGGGCCTGAATCAGAATATCTTGATG  680

seq1  AAATTAGAAAAGCCAATTATCATTCCAGGAAATTCTGGAATAGAAAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGAAAAGCCAATTATCATTCCAGGAAATTCTGGAATAGAAAAGAG  730

seq1  TGCTATCTACAGTTAAAAGTCTAGACTTAATGACATCACTGTTAGACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCTACAGTTAAAAGTCTAGACTTAATGACATCACTGTTAGACCAC  780

seq1  TACTAATTTTGAGTATTATTGTAGAAATATAGAAAGTAGGAATAAGGGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAATTTTGAGTATTATTGTAGAAATATAGAAAGTAGGAATAAGGGTC  830

seq1  AACAAATTTCCTTAAAGGTTGCTATGGGAACTAAATAAAAGACCATACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTTCCTTAAAGGTTGCTATGGGAACTAAATAAAAGACCATACAT  880

seq1  GTGGAAGTTTATCATGAATTATTGACTATGATTATAGGTTTTTGCTCTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAGTTTATCATGAATTATTGACTATGATTATAGGTTTTTGCTCTGT  930

seq1  ATATCAATTATTTCTAGTCCAACAAAGCATATAGGAAAAAATATAAATGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAATTATTTCTAGTCCAACAAAGCATATAGGAAAAAATATAAATGG  980

seq1  GAACATAATATTACTTTTCATCAGAAGAATAAAAAGGTCTTATTAATGGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATAATATTACTTTTCATCAGAAGAATAAAAAGGTCTTATTAATGGA  1030

seq1  AAAGTAAACATCTATATTTGCTTAAGTATATTAAGATTGGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAAACATCTATATTTGCTTAAGTATATTAAGATTGGAATTC  1075