BAC Information

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BAC

Clone NameB6Ng01-113O10
Chromosome3 (Build37)
Map Location 103,887,374 - 104,009,322
singlet/doubletdoublet
Overlap geneMagi3
Upstream geneAmpd1, Dennd2c, Bcas2, Trim33, Syt6, Atg4a-ps, LOC100043538, Olfml3, Hipk1, Dclre1b, Ap4b1, Gm566, Ptpn22, LOC668452, Rsbn1, Phtf1
Downstream geneEG433634, LOC668622, Lrig2, Slc16a1, EG624251, 7530404M11Rik, Ppm1j, Rhoc, Mov10, Capza1, St7l, LOC100043572, Wnt2b, Cttnbp2nl, 4930564D02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113O10.bB6Ng01-113O10.g
ACCDH919570DH919571
length5291,183
definitionDH919570|Mus musculus domesticus DNA, BAC clone: B6Ng01-113O10, 5' end.DH919571|Mus musculus domesticus DNA, BAC clone: B6Ng01-113O10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,008,788 - 104,009,322)(103,887,374 - 103,888,570)
sequence
acctagaaatttgatgaaaacttgagattcttcaaggagtttgtattctt
ttaggattaagtattatgtactagacctgtttgttgagactgtcttcatt
catgaatgtagttagacatagtggtaacccagaagttgaagcactgaaat
aatttaaattattatataccacaacttttcagggcatttttagcatgaca
tattgctatatcttatggttaaaatttaaacaatcataatgtttttagat
gatataacagtttagtatccaagtaaggtttttttttttttcttagttgt
ttaagcattgagaaaatatttctctaactaaagagattgtctacaacact
ttgagtcagattccttccaggtgctgctgtgtgttaggtagactcctaat
gttgtctctggcctgtttggccacacttgtactttttgcttttgcgtaaa
cagggcatatagtaagagaaagtaagttttctggctgggaatttttaggg
agtgtgtgaggtgggatgatcaggggtat
gaattccaagtggctgtgagcttcctgacacagatgcttggaactgaacc
tgcgtcctctggaagcagagtaagcactcttaaccactgagccatctttc
tctagtccctagtttcaattcttactgtttaggtctttaacatatttatc
tatgaagacttttttttaaaataaattctccttatataaactgtccttga
aaatcccttcaattgttcatacaagagtatgtgtggttgtattgttttgt
gtacacctgtccactaatgtttacgagaatgtactatatgtggtaaaagg
cctcgtcctcaaaatctgtcttttaagcactagactctgacttggtagaa
gaaaatgctcattctgaagaagcagactgaggtcctgagcattaattaat
gacaaaagggttgagagacagagacacaaagagatacagagagacagaaa
cagacagacagacagagaaggagaaattctctgactgtagtatccagacc
tgagtatttccagttacttaattattatattatgtaacgttactatataa
ttactctactcctgaacaaatggttttaaagattaggcttcaaggtacat
aggaatataaaaaatctttttctattgaactttgaataaattatttgcat
aacattctctacagcaaacaacattcaattttaggctgatctaattatgt
ggtattcagtatctctatgaatattatattaatactttccataaagagcc
tcctatttataggcttctattgtactaattactttaaagatcagtggtat
ttcctactgtatttcctaaatatattatctcaatacaccaactacaactt
taggactaaaaacactgaggttatataatgataatatgcttctctccatg
ttgatcattttgttggttggtttgagacaggtttcatgatgtaacctgga
atttgccatgtagaacagactagcgttgaactgagagaaatccttctgtc
tctgcctttctggagtactaggataaggtgtgtaccacccaccctagcct
ctttgtataattttgaaggcttgttaaccgtggggaaacttacctaaaag
ttttttccattttttctttcgaggaaacaaaatctttatcctttacatga
cctattcaaacccaagccaggaatgggaacaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_104008788_104009322
seq2: B6Ng01-113O10.b_48_582 (reverse)

seq1  ATACCCCTGATCATCCCACCTCACACACTCCCTAAAAATTCCCAGCCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCCTGATCATCCCACCTCACACACTCCCTAAAAATTCCCAGCCAGA  50

seq1  AAACTTACTTTCTCTTACTATATGCCCTGTTTACGCAAAAGCAAAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTACTTTCTCTTACTATATGCCCTGTTTACGCAAAAGCAAAAAGTA  100

seq1  CAAGTGTGGCCAAACAGGCCAGAGACAACATTAGGAGTCTACCTAACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTGGCCAAACAGGCCAGAGACAACATTAGGAGTCTACCTAACACA  150

seq1  CAGCAGCACCTGGAAGGAATCTGACTCAAAGTGTTGTAGACAATCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCACCTGGAAGGAATCTGACTCAAAGTGTTGTAGACAATCTCTTT  200

seq1  AGTTAGAGAAATATTTTCTCAATGCTTAAACAACTAAGAAAAAAAAAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAGAAATATTTTCTCAATGCTTAAACAACTAAGAAAAAAAAAAAA  250

seq1  ACCTTACTTGGATACTAAACTGTTATATCATCTAAAAACATTATGATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTACTTGGATACTAAACTGTTATATCATCTAAAAACATTATGATTGT  300

seq1  TTAAATTTTAACCATAAGATATAGCAATATGTCATGCTAAAAATGCCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTAACCATAAGATATAGCAATATGTCATGCTAAAAATGCCCTG  350

seq1  AAAAGTTGTGGTATATAATAATTTAAATTATTTCAGTGCTTCAACTTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTGTGGTATATAATAATTTAAATTATTTCAGTGCTTCAACTTCTG  400

seq1  GGTTACCACTATGTCTAACTACATTCATGAATGAAGACAGTCTCAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCACTATGTCTAACTACATTCATGAATGAAGACAGTCTCAACAAA  450

seq1  CAGGTCTAGTACATAATACTTAATCCTAAAAGAATACAAACTCCTTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTAGTACATAATACTTAATCCTAAAAGAATACAAACTCCTTGAAG  500

seq1  AATCTCAAGTTTTCATCAAATTTCTAGGTGAATTC  535
      |||||||||||||||||||||||||||||||||||
seq2  AATCTCAAGTTTTCATCAAATTTCTAGGTGAATTC  535

seq1: chr3_103887374_103888570
seq2: B6Ng01-113O10.g_67_1249

seq1  GAATTCCAAGTGGCTGTGAGCTTCCTGACACAGATGCTTGGAACTGAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGGCTGTGAGCTTCCTGACACAGATGCTTGGAACTGAACC  50

seq1  TGCGTCCTCTGGAAGCAGAGTAAGCACTCTTAACCACTGAGCCATCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGTCCTCTGGAAGCAGAGTAAGCACTCTTAACCACTGAGCCATCTTTC  100

seq1  TCTAGTCCCTAGTTTCAATTCTTACTGTTTAGGTCTTTAACATATTTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCCCTAGTTTCAATTCTTACTGTTTAGGTCTTTAACATATTTATC  150

seq1  TATGAAGACTTTTTTTTAAAATAAATTCTCCTTATATAAACTGTCCTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGACTTTTTTTTAAAATAAATTCTCCTTATATAAACTGTCCTTGA  200

seq1  AAATCCCTTCAATTGTTCATACAAGAGTATGTGTGGTTGTATTGTTTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCCTTCAATTGTTCATACAAGAGTATGTGTGGTTGTATTGTTTTGT  250

seq1  GTACACCTGTCCACTAATGTTTACGAGAATGTACTATATGTGGTAAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACCTGTCCACTAATGTTTACGAGAATGTACTATATGTGGTAAAAGG  300

seq1  CCTCGTCCTCAAAATCTGTCTTTTAAGCACTAGACTCTGACTTGGTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCGTCCTCAAAATCTGTCTTTTAAGCACTAGACTCTGACTTGGTAGAA  350

seq1  GAAAATGCTCATTCTGAAGAAGCAGACTGAGGTCCTGAGCATTAATTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCTCATTCTGAAGAAGCAGACTGAGGTCCTGAGCATTAATTAAT  400

seq1  GACAAAAGGGTTGAGAGACAGAGACACAAAGAGATACAGAGAGACAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAAGGGTTGAGAGACAGAGACACAAAGAGATACAGAGAGACAGAAA  450

seq1  CAGACAGACAGACAGAGAAGGAGAAATTCTCTGACTGTAGTATCCAGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGACAGACAGAGAAGGAGAAATTCTCTGACTGTAGTATCCAGACC  500

seq1  TGAGTATTTCCAGTTACTTAATTATTATATTATGTAACGTTACTATATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTATTTCCAGTTACTTAATTATTATATTATGTAACGTTACTATATAA  550

seq1  TTACTCTACTCCTGAACAAATGGTTTTAAAGATTAGGCTTCAAGGTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCTACTCCTGAACAAATGGTTTTAAAGATTAGGCTTCAAGGTACAT  600

seq1  AGGAATATAAAAAATCTTTTTCTATTGAACTTTGAATAAATTATTTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATAAAAAATCTTTTTCTATTGAACTTTGAATAAATTATTTGCAT  650

seq1  AACATTCTCTACAGCAAACAACATTCAATTTTAGGCTGATCTAATTATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTCTCTACAGCAAACAACATTCAATTTTAGGCTGATCTAATTATGT  700

seq1  GGTATTCAGTATCTCTATGAATATTATATTAATACTTTCCATAAAGAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTCAGTATCTCTATGAATATTATATTAATACTTTCCATAAAGAGCC  750

seq1  TCCTATTTATAGGCTTCTATTGTACTAATTACTTTAAAGATCAGTGGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATTTATAGGCTTCTATTGTACTAATTACTTTAAAGATCAGTGGTAT  800

seq1  TTCCTACTGTATTTCCTAAATATATTATCTCAATACACCAACTACAACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTACTGTATTTCCTAAATATATTATCTCAATACACCAACTACAACTT  850

seq1  TAGGACTAAAAACACTGAGGTTATATAATGATAATATGCTTCTCTCCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTAAAAACACTGAGGTTATATAATGATAATATGCTTCTCTCCATG  900

seq1  TTGATCATTTTGTTGGTTGGTTTGAGACAGGGTTTCATGATGTAACCTGG  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGATCATTTTGTTGGTTGGTTTGAGACA-GGTTTCATGATGTAACCTGG  949

seq1  AATTTGCCATGTAGAACAGACTAGCGTTGAACTGAGAGAAATCCTTCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCCATGTAGAACAGACTAGCGTTGAACTGAGAGAAATCCTTCTGT  999

seq1  CTCTGCC-TTCT-GAGTACTAGGATTAAAGGTGTGTACCACCACACCTAG  1048
      ||||||| |||| ||||||||||||  |||||||||||||||   |||||
seq2  CTCTGCCTTTCTGGAGTACTAGGAT--AAGGTGTGTACCACCCACCCTAG  1047

seq1  -CTCTTGGTATAATTTTTGAAAAGCTTGTTAA-CGTTGGGAAATCTACCT  1096
       ||||| ||||||||||   || ||||||||| ||| ||||||  |||||
seq2  CCTCTTTGTATAATTTT--GAAGGCTTGTTAACCGTGGGGAAACTTACCT  1095

seq1  AAAAGGTTTTTTTCCCTTTTTTTTCTTTCGAGCGAAACAAAAAATTCTTT  1146
      |||||  ||||||||   |||||||||||||| |||||||||   |||||
seq2  AAAAG--TTTTTTCC--ATTTTTTCTTTCGAG-GAAACAAAA---TCTTT  1137

seq1  ATCCTTTTACCATGACCTATTTCCAAACCAGAGGCCAGGAATGGGGACAC  1196
      |||||||   |||||||||||  ||||||  | |||||||||||| ||||
seq2  ATCCTTT--ACATGACCTATT--CAAACC-CAAGCCAGGAATGGGAACAC  1182

seq1  A  1197
      |
seq2  A  1183