BAC Information

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BAC

Clone NameB6Ng01-113O11
Chromosome9 (Build37)3 (Build37)
Map Location 7,131,626 - 7,132,645122,718,019 - 122,718,986
singlet/doubletsingletsinglet
Overlap geneDync2h1
Upstream genePdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034, LOC100039658
Downstream geneDcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113O11.bB6Ng01-113O11.g
ACCDH919572DH919573
length1,013698
definitionDH919572|Mus musculus domesticus DNA, BAC clone: B6Ng01-113O11, 5' end.DH919573|Mus musculus domesticus DNA, BAC clone: B6Ng01-113O11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,131,626 - 7,132,645)(122,718,019 - 122,718,986)
sequence
gaattcagtgatgtcaacattattgtaagtagaataatggttcttttcct
tattaaaaaaaaaaaaaaaaaaaaaaaaccttccaaattctgacacaaaa
gacagaagaaaaaaaaaagaaactaaaacagaaaaaaattgttttccaat
agcaaatttcctttagatagtttctatccagaaaaatcaaacccttctac
caaaagtcctacctggtactcgtatgtatactgcagttcaaagtccacca
tttgaacatagcatgtatggtcactcttcatgtagaatctcacttgtttc
ttccaagcccagtcatcagttgtatgaacttgaacttggtttagttgctt
cacaatatcaatattatgaataatatcaagaattagtgctttcagcttaa
gctccagaattcctgattctacacataaaaaacaagatacaatattaata
tgtgagttgtaccttgtattcacacatgctatgttaaagactttaaatgg
caacttcaagatacactgcgataaaacaagtcatgcaaaacagaaaaccg
acaagaaattagaaaaattacagcatcagagatacttcatccagcgacag
acaggagcagatgcggagaaccacagccaaacattagacaaagcttaggg
aaccccaaggaagaggtagggggcagggattgcaggacccagagaggcta
aagataccacataatccactcaacagacatcataggagctcaaagagact
cagggagcctatatggatctgagatatgcctctgcatatgttataactat
ttagcttagtggttttgggggactcctaacagcggcaatgggcaagggga
tctctgactcttttgccttttgttggggctctttccctcctctggttgct
tcctccagccttgatctgtgagttgctatcctaggagatctgctactttc
tgaagaaaaatggtggcggagtggggaaagtagagttttgggagacatag
tgaactgggaaag
gaattccacataaaaccagagactctgaaacttatagaggagaaagtggg
gaaaagtttcgaagatatggacacaggagaaaaattcctgaacagaacag
caatggcttatgtgtaaaatcgagaatcaacaaatgggacctcataaaat
tgcaaagcttctgtaaggcaaaaaacactgtcaataagacaaaaaggcca
ccaactatcctgtcccgtgggattcagttattcgtgggtgcgagggggac
tgcaaacctggaaggaaatgggaggaagggaaggagaggcagtagaccaa
gtagattgtacctatcaaggtctcatttattaggctgaagtgtcttgttt
taaagcatacatcgcagggaataggggaggggtcaagggggaattttaca
aagaacaaagaagcgggcagctgctgacatgggggttgaagtcaagcgcc
aggtagagggcactctgcatcttatctccagaacatagatcctccatgac
agccttgggtgtcacgctgggctcaggcgtaactgatgtccttggatggc
atgggagttcaggaagagatagggaagaggggactataattcagcttttt
acagcctcaggtgccaggacgggaatagggaggagagagtgataaccagc
tcctaacaggagggccattttggcctgtcagggagattgtgaaagggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_7131626_7132645
seq2: B6Ng01-113O11.b_49_1060

seq1  GAATTCAGTGATGTCAACATTATTGTAAGTAGAATAATGGTTCTTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGATGTCAACATTATTGTAAGTAGAATAATGGTTCTTTTCCT  50

seq1  TATTAAAAAAAAAAAAAAAAAAAAAAAACCTTCCAAATTCTGACACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAAAAAAAAAAAAAAAAAAAAAAACCTTCCAAATTCTGACACAAAA  100

seq1  GACAGAAGAAAAAAAAAAGAAACTAAAACAGAAAAAAATTGTTTTCCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGAAAAAAAAAAGAAACTAAAACAGAAAAAAATTGTTTTCCAAT  150

seq1  AGCAAATTTCCTTTAGATAGTTTCTATCCAGAAAAATCAAACCCTTCTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTTCCTTTAGATAGTTTCTATCCAGAAAAATCAAACCCTTCTAC  200

seq1  CAAAAGTCCTACCTGGTACTCGTATGTATACTGCAGTTCAGAGTCCACCA  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAAAAGTCCTACCTGGTACTCGTATGTATACTGCAGTTCAAAGTCCACCA  250

seq1  TTTGAACATAGCATGTATGGTCACTCTTCATGTAGAATCTCACTTGTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACATAGCATGTATGGTCACTCTTCATGTAGAATCTCACTTGTTTC  300

seq1  TTCCAAGCCCAGTCATCAGTTGTATGAACTTGAACTTGGTTTAGTTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGCCCAGTCATCAGTTGTATGAACTTGAACTTGGTTTAGTTGCTT  350

seq1  CACAATATCAATATTATGAATAATATCAAGAATTAGTGCTTTCAGCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATATCAATATTATGAATAATATCAAGAATTAGTGCTTTCAGCTTAA  400

seq1  GCTCCAGAATTCCTGATTCTACACATAAAAAACAAGATACAATATTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAGAATTCCTGATTCTACACATAAAAAACAAGATACAATATTAATA  450

seq1  TGTGAGTTGTACCTTGTATTCACACATGCTATGTTAAAGACTTTAAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGTTGTACCTTGTATTCACACATGCTATGTTAAAGACTTTAAATGG  500

seq1  CAACTTCAAGATACACTGCGATAAAACAAGTCATGCAAAACAGAAAACCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCAAGATACACTGCGATAAAACAAGTCATGCAAAACAGAAAACCG  550

seq1  ACAAGAAATTAGAAAAATTACAGCATCAGAGATACTTCATCCAGCGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAATTAGAAAAATTACAGCATCAGAGATACTTCATCCAGCGACAG  600

seq1  ACAGGAGCAGATGCGGAGAACCACAGCCAAACATTAGACAAAGCTTAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGCAGATGCGGAGAACCACAGCCAAACATTAGACAAAGCTTAGGG  650

seq1  AACCCCAAGGAAGAGGTAGGGGGCAGGGATTGCAGGACCCAGAGAGGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAGGAAGAGGTAGGGGGCAGGGATTGCAGGACCCAGAGAGGCTA  700

seq1  AAGATACCACATAATCCACTCAACAGACATCATAGGAGCTCAAAGAGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACCACATAATCCACTCAACAGACATCATAGGAGCTCAAAGAGACT  750

seq1  CAGGGAGCCTATATGGATCTGAGATATGCCTCTGCATATGTTATAACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGCCTATATGGATCTGAGATATGCCTCTGCATATGTTATAACTAT  800

seq1  TTAGCTTAGTGGTTTTGGGGGACTCCTAACAGCGGCAATGGGCAGGGGGA  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTAGCTTAGTGGTTTTGGGGGACTCCTAACAGCGGCAATGGGCAAGGGGA  850

seq1  TCTCTGACTCTTTTGCCTTTTGTTGGGGCTCTTTCCCTCCTCCTGGGTTG  900
      ||||||||||||||||||||||||||||||||||||||||||   |||||
seq2  TCTCTGACTCTTTTGCCTTTTGTTGGGGCTCTTTCCCTCCTC--TGGTTG  898

seq1  CTTCCTCCAGCCTTGATCTTGTTGAGTTGCTATCCCTAGGAGATCTGCTA  950
      |||||||||||||||||||   ||||||||||| ||||||||||||||||
seq2  CTTCCTCCAGCCTTGATCT--GTGAGTTGCTAT-CCTAGGAGATCTGCTA  945

seq1  CTTTCTGAAGAAAAATGGTGGCGGAGGTGGGGAAAAGAAGAGGTTTTGGG  1000
      ||||||||||||||||||||||||| |||||| |||| ||| ||||||||
seq2  CTTTCTGAAGAAAAATGGTGGCGGA-GTGGGG-AAAGTAGA-GTTTTGGG  992

seq1  AGACAGAGTGAACTGGGAAA  1020
      ||||| ||||||||||||||
seq2  AGACATAGTGAACTGGGAAA  1012

seq1: chr3_122718019_122718986
seq2: B6Ng01-113O11.g_209_767 (reverse)

seq1  GCCC-TTCACAATCTCCCTGGCAGGCC-AAATGG-CCTTGTACTGAGAGC  47
      |||| ||||||||||||||| |||||| |||||| |||  |  |  ||||
seq2  GCCCTTTCACAATCTCCCTGACAGGCCAAAATGGCCCTCCTGTTAGGAGC  50

seq1  TGGTTGTCACCCCCCTTTCCTCCCTATTCCTTTCCTGGCACCTGAGGCTG  97
      ||||| |||   | || |||||||||||||  ||||||||||||||||||
seq2  TGGTTATCA---CTCTCTCCTCCCTATTCCCGTCCTGGCACCTGAGGCTG  97

seq1  TAAAA----------------GCTCTTCCCTATTTCTTCCTGAGTTCCCA  131
      |||||                 ||||||||||| |||||||||  |||||
seq2  TAAAAAGCTGAATTATAGTCCCCTCTTCCCTATCTCTTCCTGAACTCCCA  147

seq1  TGACATCCAAGGACATGAGTTACGCCTGAGCCCAGCCTGACCCCCAAGGC  181
      || ||||||||||||| ||||||||||||||||||| |||| ||||||||
seq2  TGCCATCCAAGGACATCAGTTACGCCTGAGCCCAGCGTGACACCCAAGGC  197

seq1  TGTCAAGGAGGATCGATGTTCCAGAGATAAGATCCAGAGTGCCCGCTGCC  231
      ||||| |||||||| ||||||  |||||||||| |||||||||| || ||
seq2  TGTCATGGAGGATCTATGTTCTGGAGATAAGATGCAGAGTGCCCTCTACC  247

seq1  TGGCGCCTGACTTCGGCCCCCATGTCAGCAGATGCCCACTTCTTTGTTCT  281
      |||||| |||||||  ||||||||||||||| ||||| ||||||||||||
seq2  TGGCGCTTGACTTCAACCCCCATGTCAGCAGCTGCCCGCTTCTTTGTTCT  297

seq1  TTGTATAATTCTCCCTAGACCCCTCCCATATTCCCCGCGATGTATGCTTT  331
      ||||| ||||| |||| |||||||||| ||||||| ||||||||||||||
seq2  TTGTAAAATTCCCCCTTGACCCCTCCCCTATTCCCTGCGATGTATGCTTT  347

seq1  AAAAAGAAGGCACCTCAGCCTAATAAACGAGACCTTGATAGGTTCAATCT  381
       |||| ||| ||| ||||||||||||| ||||||||||||||| ||||||
seq2  -AAAACAAGACACTTCAGCCTAATAAATGAGACCTTGATAGGTACAATCT  396

seq1  ACTTGGTCCTCCGACTCTCTT----TTATTCCCATTTCCTTCCAGGTTTG  427
      ||||||||  | | ||||| |    ||  |||||||||||||||||||||
seq2  ACTTGGTCTACTGCCTCTCCTTCCCTTCCTCCCATTTCCTTCCAGGTTTG  446

seq1  CGGTCCCCCTCGCACCCACGAATAACTGAATCCCACGGGACGGGATACAG  477
      | ||||||||||||||||||||||||||||||||||||||| |||||   
seq2  CAGTCCCCCTCGCACCCACGAATAACTGAATCCCACGGGACAGGATA---  493

seq1  GAGATATATTGTGGGATCCTCTGGTAGTACTATGTCCAATTTTCTGAGGA  527
              |||  ||  ||| |  | ||  |||   || | || |  |  
seq2  -------GTTGGTGG--CCTTT--TTGTCTTATTGACAGTGTTTTTTG--  530

seq1  ACCGCCAGACTGATTTCCAGAGTGGTTGTACAAGCTTGCAATCCCACCAA  577
       |   ||||  | ||| ||      || ||  ||                
seq2  CCTTACAGA-AGCTTTGCA-----ATTTTATGAGG---------------  559

seq1  CAATGGAGGAGTGTTCCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTT  627
                                                        
seq2  --------------------------------------------------  559

seq1  ACCTGAATTTTTGATCTTAGCCATTCTAACTGGTGTGAGGTGGAATATCA  677
                                                        
seq2  --------------------------------------------------  559

seq1  GGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGATGCTGAACATATT  727
                                                        
seq2  --------------------------------------------------  559

seq1  TTCAGGTGCTTCTCAGCCATTCTGTATTCCTCAGGTGAGAATTCTTTGTT  777
                                                        
seq2  --------------------------------------------------  559

seq1  TAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTTCTGGAGTCCAC  827
                                                        
seq2  --------------------------------------------------  559

seq1  CTTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTATCTGATTTAG  877
                                                        
seq2  --------------------------------------------------  559

seq1  GATAGGTAAAGAGCTTTCCCAATCTGTTGGTGGCCTTTTTGTCTTATTGA  927
                                                        
seq2  --------------------------------------------------  559

seq1  CAGTGTCTTTTGCCTTGCAGAAGCTTTGCAATTTTATGAGG  968
                                               
seq2  -----------------------------------------  559