BAC Information

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BAC

Clone NameB6Ng01-114D12
Chromosome3 (Build37)
Map Location 147,013,241 - 147,117,655
singlet/doubletdoublet
Overlap genenone
Upstream geneSsx2ip, Ctbs, Spata1, Gng5, Bxdc5, LOC100040473, Dnase2b, Uox, 4930503B20Rik, Gm1652, LOC670100, Prkacb, LOC100040540, Ttll7, Ppia-ps3_1528.1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114D12.bB6Ng01-114D12.g
ACCDH919794DH919795
length1,1651,011
definitionDH919794|Mus musculus domesticus DNA, BAC clone: B6Ng01-114D12, 5' end.DH919795|Mus musculus domesticus DNA, BAC clone: B6Ng01-114D12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,013,241 - 147,014,410)(147,116,636 - 147,117,655)
sequence
gaattcccttcactgtaactttccagtctctacactagatatcagatttg
aatatacagctacaaactcaactcctccatttgaccatctttttataatt
gttttgatagactacatgcaaatgcaaggccctacagtccttgggaaaga
gcttctcccactgtgttttctggatcatagttcccaaaatgaacttgtat
ccttatatatcacttatcatatacttctactaaatgaacaaattaaagtc
cttctgctttcaaacacatccgagttggttcttctgttgccatttcaaac
aggaccatcttgggtgaaccactgtgttagtctctatagtactgcagttc
tcttacatgctgtcctagaccaggcacaaatttcctgctaataagtgtat
tgttgccttatgcattagagtctcaactataagccctcataaaatacttc
agttggcttcaaaacaagacatggggctttgcaaaagcaaagcaggaaaa
tcaagtgtagatagagcatcttgtcctcctccctacttcaagtcttcagc
ataactgttcaaacctctggtttcatgacatcgacaattgtgtgagaatt
aaagttgaccataagcaccagaaaccgaagaaaatcaaactgaccgaggg
taacacaaacttctcatgctatgctctcaaatatacagcctggggtgagc
tatgcacttgtagaataccacttagagtcctttcatggtattgttttttt
atgttgtcttagaagttaatatacagccccttaaactaccattagttaaa
ctgaattattctttttaaggataataaaataatgttaagtttgcatcaac
aaatttgatttacaaatatgaggtactcggaaatgtctttgttttttcct
caaaacaaaatttttctctccccttttctgtagtaatgggagagagacgt
gaggcagatggtttgggagcacacaaattgaagcagggctggtgagggca
cagcaccagcgcagaacagactctttgttcgcatcccataggaatgctga
gaatgatgccgatggttcctggtaaatacaggggaacctttcttcatgta
ttctttcttaaataatttggtcaagcattttctattcatctggaacactc
agatctcacattggg
gaattcaattgttccattaagacattaagactaatctaggagatcagcca
acaactagccactctctgggagctgaaggggttctgctgacatcagccta
agtctcccctgcagtccagagttctcagtgtcttacatccctgtgttttg
tcctgtatacctagcagtcttatggcgggaatgagtgactagaatattgg
ttgatagagctttgtaagagaaaacaagatctctcaacatggcttctttg
agacaattaattaccacacttgttacattaagtagtgaaagcaaggaaaa
tatttgccatttgttcccaggtcctgatgttcacagaggaccagatctgt
ttccattctttctgtgacactcaggccccgcttagtcatcctaacatctc
tctgtgtaaaggaaatggtgccactggttgttgtgcagtttgcaagtcat
agccaacttcaatgggtaaatgtcagcactgtcgggggatctgagggctg
tttctgatttttctctactgcttcttctcaagcagcaggaatggagatga
atttgctttgttgtgtgacactgagtaattagagagtctgcctactacca
agtgtcttttagcattctttcccttaattgaatataccttctagtcaagt
cttattgtttttaacctacatcacatcctgtcacaaatttaggtcacttg
cttttggttttaatttcccccagtccactatttgagctcggtgaatgttg
taactatgaagggaataccctttcctttctcataccttacacacaaaact
cacatcagctttctgctcttataggagatagatctgtactcatgattaac
gaagctgcccttcattcttattctttcaagagagaagaatcaagtggagt
gtagttataaagcagccaaagttgtttcttgttgctttggtttttttttt
atttggtttctgagggtttttgtttgttgttaatttcaggggtggttttt
attccaagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_147013241_147014410
seq2: B6Ng01-114D12.b_48_1212

seq1  GAATTCCCTTCACTGTAACTTTCCAGTCTCTACACTAGATATCAGATTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTCACTGTAACTTTCCAGTCTCTACACTAGATATCAGATTTG  50

seq1  AATATACAGCTACAAACTCAACTCCTCCATTTGACCATCTTTTTATAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACAGCTACAAACTCAACTCCTCCATTTGACCATCTTTTTATAATT  100

seq1  GTTTTGATAGACTACATGCAAATGCAAGGCCCTACAGTCCTTGGGAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGATAGACTACATGCAAATGCAAGGCCCTACAGTCCTTGGGAAAGA  150

seq1  GCTTCTCCCACTGTGTTTTCTGGATCATAGTTCCCAAAATGAACTTGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCCACTGTGTTTTCTGGATCATAGTTCCCAAAATGAACTTGTAT  200

seq1  CCTTATATATCACTTATCATATACTTCTACTAAATGAACAAATTAAAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATATATCACTTATCATATACTTCTACTAAATGAACAAATTAAAGTC  250

seq1  CTTCTGCTTTCAAACACATCCGAGTTGGTTCTTCTGTTGCCATTTCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTTTCAAACACATCCGAGTTGGTTCTTCTGTTGCCATTTCAAAC  300

seq1  AGGACCATCTTGGGTGAACCACTGTGTTAGTCTCTATAGTACTGCAGTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCATCTTGGGTGAACCACTGTGTTAGTCTCTATAGTACTGCAGTTC  350

seq1  TCTTACATGCTGTCCTAGACCAGGCACAAATTTCCTGCTAATAAGTGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACATGCTGTCCTAGACCAGGCACAAATTTCCTGCTAATAAGTGTAT  400

seq1  TGTTGCCTTATGCATTAGAGTCTCAACTATAAGCCCTCATAAAATACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTTATGCATTAGAGTCTCAACTATAAGCCCTCATAAAATACTTC  450

seq1  AGTTGGCTTCAAAACAAGACATGGGGCTTTGCAAAAGCAAAGCAGGAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGCTTCAAAACAAGACATGGGGCTTTGCAAAAGCAAAGCAGGAAAA  500

seq1  TCAAGTGTAGATAGAGCATCTTGTCCTCCTCCCTACTTCAAGTCTTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTGTAGATAGAGCATCTTGTCCTCCTCCCTACTTCAAGTCTTCAGC  550

seq1  ATAACTGTTCAAACCTCTGGTTTCATGACATCGACAATTGTGTGAGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGTTCAAACCTCTGGTTTCATGACATCGACAATTGTGTGAGAATT  600

seq1  AAAGTTGACCATAAGCACCAGAAACCGAAGAAAATCAAACTGACCGAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGACCATAAGCACCAGAAACCGAAGAAAATCAAACTGACCGAGGG  650

seq1  TAACACAAACTTCTCATGCTATGCTCTCAAATATACAGCCTGGGGTGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACAAACTTCTCATGCTATGCTCTCAAATATACAGCCTGGGGTGAGC  700

seq1  TATGCACTTGTAGAATACCACTTAGAGTCCTTTCATGGTATTGTTTTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACTTGTAGAATACCACTTAGAGTCCTTTCATGGTATTGTTTTTTT  750

seq1  ATGTTGTCTTAGAAGTTAATATACAGCCCCTTAAACTACCATTAGTTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTCTTAGAAGTTAATATACAGCCCCTTAAACTACCATTAGTTAAA  800

seq1  CTGAATTATTCTTTTTAAGGATAATAAAATAATGTTAAGTTTGCATCAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTATTCTTTTTAAGGATAATAAAATAATGTTAAGTTTGCATCAAC  850

seq1  AAATTTGATTTACAAATATGAGGTACTCGGAAATGTCTTTGTTTTTTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGATTTACAAATATGAGGTACTCGGAAATGTCTTTGTTTTTTCCT  900

seq1  CAAAACAAAATTTTTCTCTCCCC-TTTCTGTAGTAATGGGAGAGAGACGT  949
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAAAACAAAATTTTTCTCTCCCCTTTTCTGTAGTAATGGGAGAGAGACGT  950

seq1  GAGGCAGATGG-TTGGGAGCACACAAATTGAAGCAGGGCTGGTGAGGGCA  998
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGATGGTTTGGGAGCACACAAATTGAAGCAGGGCTGGTGAGGGCA  1000

seq1  CAGCAGCAAGCGCAGAAACAGACTCTTTGTTCGCATCCCATAAGGATGCT  1048
      ||||| | ||||||| |||||||||||||||||||||||||| | |||||
seq2  CAGCA-CCAGCGCAG-AACAGACTCTTTGTTCGCATCCCATAGGAATGCT  1048

seq1  GAGAAATGATGGCGATTGTTTCCTGTAAATACAGGGGACCCTTCCTTCCA  1098
      ||| ||||||| |||| ||| |  |||||||||||||| |||| ||| ||
seq2  GAG-AATGATGCCGATGGTTCCTGGTAAATACAGGGGAACCTTTCTT-CA  1096

seq1  TGTA-TCTTCTTAAAATAATTTTGTACAAGCCATTTTCTATTTCAATCTG  1147
      |||| ||||  | ||||||||| || |||| |||||||||||   |||||
seq2  TGTATTCTTTCTTAAATAATTTGGT-CAAG-CATTTTCTATT--CATCTG  1142

seq1  GCACACTCAGATCTCACATTGGG  1170
      | |||||||||||||||||||||
seq2  GAACACTCAGATCTCACATTGGG  1165

seq1: chr3_147116636_147117655
seq2: B6Ng01-114D12.g_70_1080 (reverse)

seq1  GTGCTTGGAATAAAAAAACAACCACTGAAAATAAACAAACAAACAAAAAA  50
      |||||||||||  |||||| ||| |||||| |||   ||||||| |||||
seq2  GTGCTTGGAAT--AAAAACCACCCCTGAAATTAA--CAACAAAC-AAAAA  45

seq1  CCCTCAGAAAACAAAATAAAAAAAAAAAACCAAAGCAAACAAGAAACAAC  100
      |||||||||| |||   | ||||||||||||||||| |||||||||||||
seq2  CCCTCAGAAACCAA---ATAAAAAAAAAACCAAAGC-AACAAGAAACAAC  91

seq1  TTTGGCTGCTTTATAACTACACTCCACTTTGATTCTTCTCTCTTGAAAGA  150
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTGGCTGCTTTATAACTACACTCCAC-TTGATTCTTCTCTCTTGAAAGA  140

seq1  ATAAGAATGAA-GGCAGCTTCGTTAATCATGAGTACAGATCTATCTCCTT  199
      ||||||||||| |||||||||||||||||||||||||||||||||||| |
seq2  ATAAGAATGAAGGGCAGCTTCGTTAATCATGAGTACAGATCTATCTCC-T  189

seq1  ATAAGAGCAGAAAGCTGATGTGAGTTTTGTGTGTAAGGTATGAG-AAGGA  248
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATAAGAGCAGAAAGCTGATGTGAGTTTTGTGTGTAAGGTATGAGAAAGGA  239

seq1  AAGGGTATTCCCTTCATAGTTACAACATTCACCGAGCTCAAATAGTGGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTATTCCCTTCATAGTTACAACATTCACCGAGCTCAAATAGTGGAC  289

seq1  TGGGGGAAATTAAAACCAAAAGCAAGTGACCTAAATTTGTGACAGGATGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAAATTAAAACCAAAAGCAAGTGACCTAAATTTGTGACAGGATGT  339

seq1  GATGTAGGTTAAAAACAATAAGACTTGACTAGAAGGTATATTCAATTAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAGGTTAAAAACAATAAGACTTGACTAGAAGGTATATTCAATTAAG  389

seq1  GGAAAGAATGCTAAAAGACACTTGGTAGTAGGCAGACTCTCTAATTACTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGAATGCTAAAAGACACTTGGTAGTAGGCAGACTCTCTAATTACTC  439

seq1  AGTGTCACACAACAAAGCAAATTCATCTCCATTCCTGCTGCTTGAGAAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCACACAACAAAGCAAATTCATCTCCATTCCTGCTGCTTGAGAAGA  489

seq1  AGCAGTAGAGAAAAATCAGAAACAGCCCTCAGATCCCCCGACAGTGCTGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAGAGAAAAATCAGAAACAGCCCTCAGATCCCCCGACAGTGCTGA  539

seq1  CATTTACCCATTGAAGTTGGCTATGACTTGCAAACTGCACAACAACCAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACCCATTGAAGTTGGCTATGACTTGCAAACTGCACAACAACCAGT  589

seq1  GGCACCATTTCCTTTACACAGAGAGATGTTAGGATGACTAAGCGGGGCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACCATTTCCTTTACACAGAGAGATGTTAGGATGACTAAGCGGGGCCT  639

seq1  GAGTGTCACAGAAAGAATGGAAACAGATCTGGTCCTCTGTGAACATCAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCACAGAAAGAATGGAAACAGATCTGGTCCTCTGTGAACATCAGG  689

seq1  ACCTGGGAACAAATGGCAAATATTTTCCTTGCTTTCACTACTTAATGTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGAACAAATGGCAAATATTTTCCTTGCTTTCACTACTTAATGTAA  739

seq1  CAAGTGTGGTAATTAATTGTCTCAAAGAAGCCATGTTGAGAGATCTTGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTGGTAATTAATTGTCTCAAAGAAGCCATGTTGAGAGATCTTGTT  789

seq1  TTCTCTTACAAAGCTCTATCAACCAATATTCTAGTCACTCATTCCCGCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTACAAAGCTCTATCAACCAATATTCTAGTCACTCATTCCCGCCA  839

seq1  TAAGACTGCTAGGTATACAGGACAAAACACAGGGATGTAAGACACTGAGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACTGCTAGGTATACAGGACAAAACACAGGGATGTAAGACACTGAGA  889

seq1  ACTCTGGACTGCAGGGGAGACTTAGGCTGATGTCAGCAGAACCCCTTCAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGGACTGCAGGGGAGACTTAGGCTGATGTCAGCAGAACCCCTTCAG  939

seq1  CTCCCAGAGAGTGGCTAGTTGTTGGCTGATCTCCTAGATTAGTCTTAATG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAGAGAGTGGCTAGTTGTTGGCTGATCTCCTAGATTAGTCTTAATG  989

seq1  TCTTAATGGAACAATTGAATTC  1020
      ||||||||||||||||||||||
seq2  TCTTAATGGAACAATTGAATTC  1011