BAC Information

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BAC

Clone NameB6Ng01-114E01
Chromosome3 (Build37)
Map Location 90,287,899 - 90,491,797
singlet/doubletdoublet
Overlap geneIlf2, Snapap, 2500003M10Rik, S100a1, S100a13, S100a14, S100a16, EG628324, S100a3, S100a4, S100a5, S100a6, S100a7a, S100a8
Upstream geneKcnn3, LOC668078, Adar, Chrnb2, Ube2q1, LOC668087, She, Il6ra, Atp8b2, LOC668102, Hax1, Ubap2l, 4933434E20Rik, 1700094D03Rik, Tpm3, Nup210l, Rps27, Rab13, Jtb, Creb3l4, LOC100042397, Slc39a1, Crtc2, Dennd4b, Gatad2b, Slc27a3, Ints3, Npr1, LOC668141
Downstream geneS100a9, LOC668165, LOC383949, Pglyrp4, LOC329706, EG545541, LOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114E01.bB6Ng01-114E01.g
ACCDH919818DH919819
length1,1621,020
definitionDH919818|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E01, 5' end.DH919819|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,490,616 - 90,491,797)(90,287,899 - 90,288,911)
sequence
gaattcacttttcacttgggagagcaaagggcagagtagaaaaggatgca
ggaaattctatcatcatatttgtgctttgtacaaatcaaccagaggttta
tggaataggctaggggtttaaagaggccacaggtacataaccagttagga
ggtgatggcaatggtaccatagtccaggtgagaacttaatagacctgttg
tggtgtcaacagtgcctgttaggtcagaatataaaatgtgcctcaattag
atgaggcaacctgaagctcctattgtaatgagcctgacaggaatgaagat
attgggaaaagagacttgtgtctcacagactactgaatcagtgcaccaga
caaaaatgggaattttcccacactgggagaaggaaaagctcccagccaca
gcggtactttagaagagatttcccacaattctaacactttgtcaaactac
cttacaggacgagattgaagcaggaccacatttcaacctgtgcttctgag
atgtagacatacatgacccttcacatttcaatctcacttcagggccccag
aagatggacttgggtgttcactagagccccttattcctctttgcactgtg
accatatcaaacaaatcccctctgtctgctttccaacatcaagtttacct
ttttgattggcttaaagagcatgggttgcaggacccagcttcggctcaga
ttgtaaccactaagtttgattcacaggcataaataaatttctgtaattgt
gtactgtttgccaagaccttgctaggaagaggcccctgttttaagcagtt
cagtgaggcaatcttacacaacctcaggacccaacctcagagttctcctc
accccacctccccgagttccctaaaatttgtattttagaaagtactgcat
tatgaattttgacattccaattaccaagagataagcatgaatgatgcatg
ttgcttcagcttcttgggctcatgctttgctcaagaccaggtaatttccc
agcttttattagaagcaggtctcaggagacagaatgggacccagggagag
aacacagcctcttgcagtttctccctttctattgtgagttctccatactt
gcctctaactggaatgccagtgtgcgactttaagtggctccgaaacagag
agacgggaagga
gaattcaaagtcatccttggcttcataatgtgttgggaggcagcctgagc
gacttgagatcttgtctcaaaagcttgatggctcagtgggttagaagtgc
ttgccagctaggcggtggtggcgcacgcctttaatcccagcacttgggag
gcagaggcaggcggatttctgagttcgaggccagcctggtctacagagtg
agttccaggacagccagggctacacagagaaaccctgtctcgaaaaacca
aaaaaaaaaaaaaaaaaaaaaaagtgcttgccaccaagcttgatgacttg
aattcattccatcagacctgcatggtagaaggagagaactgattcctaaa
ggctgtccattgctctctataggagtgtgagtgttcccagtctcatatgc
tctaaataaaacataatttttaaaaaattcaaaacagaacaattatgttt
tacatcttgattattttgttcttttagttttgaccatgctgactaatgaa
actggctttgaaattagctcttctgatgctacggtgaaaattctcattac
aacagtgccccccaatctccgaaaactggatccagaactccattgtaagt
ctcccccctccccattgctgagaaatatgggggtgggggctaggaggtac
agacagccaaagcgttggcactttctggaaatgttagtatcttgtcaact
gtaaaggagttttaccttccctgtcattttctagttagttttaccagctt
cctagtgacttggctgttgtggggagtttttgctataccacttttggctc
ctggcagatggagctatcttttggatctgaaaatgaaagatacatttagc
ttatttttaaatgccttggctgcctcaaaggctgggtacttcctaacctt
ccccctgctactttatgcccagtcaggaaagtggccagtggccacttcac
ccgaaatctcacaatgctgggttggtattctttcattcctcttctgcatc
ctactgggagcaactctaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_90490616_90491797
seq2: B6Ng01-114E01.b_47_1208 (reverse)

seq1  TCCTTCCCGTGCTCTTCTGTTTTCTGAGCTCCACTCTAAGGTCTGCAC-C  49
      |||||||||| ||| |||| |||| |||  ||||| ||| ||| |||| |
seq2  TCCTTCCCGT-CTC-TCTG-TTTCGGAG--CCACT-TAAAGTC-GCACAC  43

seq1  TGCTATTTCAAGTTATGAAGGCAAGTTATGGAGAACTCACAATAGAAAGT  99
      ||  | ||| |||||   ||||||| ||||||||||||||||||||||| 
seq2  TGGCA-TTCCAGTTA--GAGGCAAG-TATGGAGAACTCACAATAGAAAGG  89

seq1  GAGAAAACTTGCAAGAGGCTTGTGGTTTCTCTCCTGGGGTCCATTTCTTG  149
      ||||||   |||||||||| ||||  ||||||||  ||||||  ||||  
seq2  GAGAAA--CTGCAAGAGGC-TGTG--TTCTCTCCCTGGGTCCCATTCT--  132

seq1  GTCTCTTGAAGACCTGCCTCTAAT-ACAGCTGGGAAATTTACCTGGTCTT  198
      ||||| || |||||||| |||||| | |||||||||| ||||||||||||
seq2  GTCTCCTG-AGACCTGCTTCTAATAAAAGCTGGGAAA-TTACCTGGTCTT  180

seq1  GAGCAAAGCATGAGCCCAAGAAGCTTGAGCAACAATTGCATCATTCATGC  248
      |||||||||||||||||||||||||  |||||||  ||||||||||||||
seq2  GAGCAAAGCATGAGCCCAAGAAGCTGAAGCAACA--TGCATCATTCATGC  228

seq1  TATTCTCTTGGTAATTGGAATGTCAAAATTCATAATGCAGTACTTTCTAA  298
      |  |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTTGGTAATTGGAATGTCAAAATTCATAATGCAGTACTTTCTAA  278

seq1  AATACAAATTTTAGGGAACTCGGGGAGGTGGGGTGAGGAGAACTCTGAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAAATTTTAGGGAACTCGGGGAGGTGGGGTGAGGAGAACTCTGAGG  328

seq1  TTGGGTCCTGAGGTTGTGTAAGATTGCCTCACTGAACTGCTTAAAACAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTCCTGAGGTTGTGTAAGATTGCCTCACTGAACTGCTTAAAACAGG  378

seq1  GGCCTCTTCCTAGCAAGGTCTTGGCAAACAGTACACAATTACAGAAATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCTTCCTAGCAAGGTCTTGGCAAACAGTACACAATTACAGAAATTT  428

seq1  ATTTATGCCTGTGAATCAAACTTAGTGGTTACAATCTGAGCCGAAGCTGG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCCTGTGAATCAAACTTAGTGGTTACAATCTGAGCCGAAGCTGG  478

seq1  GTCCTGCAACCCATGCTCTTTAAGCCAATCAAAAAGGTAAACTTGATGTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCAACCCATGCTCTTTAAGCCAATCAAAAAGGTAAACTTGATGTT  528

seq1  GGAAAGCAGACAGAGGGGATTTGTTTGATATGGTCACAGTGCAAAGAGGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCAGACAGAGGGGATTTGTTTGATATGGTCACAGTGCAAAGAGGA  578

seq1  ATAAGGGGCTCTAGTGAACACCCAAGTCCATCTTCTGGGGCCCTGAAGTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGGGCTCTAGTGAACACCCAAGTCCATCTTCTGGGGCCCTGAAGTG  628

seq1  AGATTGAAATGTGAAGGGTCATGTATGTCTACATCTCAGAAGCACAGGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGAAATGTGAAGGGTCATGTATGTCTACATCTCAGAAGCACAGGTT  678

seq1  GAAATGTGGTCCTGCTTCAATCTCGTCCTGTAAGGTAGTTTGACAAAGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGTGGTCCTGCTTCAATCTCGTCCTGTAAGGTAGTTTGACAAAGTG  728

seq1  TTAGAATTGTGGGAAATCTCTTCTAAAGTACCGCTGTGGCTGGGAGCTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTGTGGGAAATCTCTTCTAAAGTACCGCTGTGGCTGGGAGCTTT  778

seq1  TCCTTCTCCCAGTGTGGGAAAATTCCCATTTTTGTCTGGTGCACTGATTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCCAGTGTGGGAAAATTCCCATTTTTGTCTGGTGCACTGATTC  828

seq1  AGTAGTCTGTGAGACACAAGTCTCTTTTCCCAATATCTTCATTCCTGTCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTCTGTGAGACACAAGTCTCTTTTCCCAATATCTTCATTCCTGTCA  878

seq1  GGCTCATTACAATAGGAGCTTCAGGTTGCCTCATCTAATTGAGGCACATT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTACAATAGGAGCTTCAGGTTGCCTCATCTAATTGAGGCACATT  928

seq1  TTATATTCTGACCTAACAGGCACTGTTGACACCACAACAGGTCTATTAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTCTGACCTAACAGGCACTGTTGACACCACAACAGGTCTATTAAG  978

seq1  TTCTCACCTGGACTATGGTACCATTGCCATCACCTCCTAACTGGTTATGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACCTGGACTATGGTACCATTGCCATCACCTCCTAACTGGTTATGT  1028

seq1  ACCTGTGGCCTCTTTAAACCCCTAGCCTATTCCATAAACCTCTGGTTGAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGGCCTCTTTAAACCCCTAGCCTATTCCATAAACCTCTGGTTGAT  1078

seq1  TTGTACAAAGCACAAATATGATGATAGAATTTCCTGCATCCTTTTCTACT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAAAGCACAAATATGATGATAGAATTTCCTGCATCCTTTTCTACT  1128

seq1  CTGCCCTTTGCTCTCCCAAGTGAAAAGTGAATTC  1182
      ||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTTGCTCTCCCAAGTGAAAAGTGAATTC  1162

seq1: chr3_90287899_90288911
seq2: B6Ng01-114E01.g_69_1088

seq1  GAATTCAAAGTCATCCTTGGCTTCATAATGTGTTGGGAGGCAGCCTGAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTCATCCTTGGCTTCATAATGTGTTGGGAGGCAGCCTGAGC  50

seq1  GACTTGAGATCTTGTCTCAAAAGCTTGATGGCTCAGTGGGTTAGAAGTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAGATCTTGTCTCAAAAGCTTGATGGCTCAGTGGGTTAGAAGTGC  100

seq1  TTGCCAGCTAGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCTAGGCGGTGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAG  150

seq1  GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTG  200

seq1  AGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCA  250

seq1  AAAAAAAAAAAAAAAAAAAAAAAGTGCTTGCCACCAAGCTTGATGACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAGTGCTTGCCACCAAGCTTGATGACTTG  300

seq1  AATTCATTCCATCAGACCTGCATGGTAGAAGGAGAGAACTGATTCCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTCCATCAGACCTGCATGGTAGAAGGAGAGAACTGATTCCTAAA  350

seq1  GGCTGTCCATTGCTCTCTATAGGAGTGTGAGTGTTCCCAGTCTCATATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCCATTGCTCTCTATAGGAGTGTGAGTGTTCCCAGTCTCATATGC  400

seq1  TCTAAATAAAACATAATTTTTAAAAAATTCAAAACAGAACAATTATGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATAAAACATAATTTTTAAAAAATTCAAAACAGAACAATTATGTTT  450

seq1  TACATCTTGATTATTTTGTTCTTTTAGTTTTGACCATGCTGACTAATGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTTGATTATTTTGTTCTTTTAGTTTTGACCATGCTGACTAATGAA  500

seq1  ACTGGCTTTGAAATTAGCTCTTCTGATGCTACGGTGAAAATTCTCATTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGCTTTGAAATTAGCTCTTCTGATGCTACGGTGAAAATTCTCATTAC  550

seq1  AACAGTGCCCCCCAATCTCCGAAAACTGGATCCAGAACTCCATTGTAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGCCCCCCAATCTCCGAAAACTGGATCCAGAACTCCATTGTAAGT  600

seq1  CTCCCCCCTCCCCATTGCTGAGAAATATGGGGGTGGGGGCTAGGAGGTAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCCCTCCCCATTGCTGAGAAATATGGGGGTGGGGGCTAGGAGGTAC  650

seq1  AGACAGCCAAAGCGTTGGCACTTTCTGGAAATGTTAGTATCTTGTCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGCCAAAGCGTTGGCACTTTCTGGAAATGTTAGTATCTTGTCAACT  700

seq1  GTAAAGGAGTTTTACCTTCCCTGTCA-TTTCTAGTTAGTTTTACCAGCTT  749
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTAAAGGAGTTTTACCTTCCCTGTCATTTTCTAGTTAGTTTTACCAGCTT  750

seq1  CCTAGTGACTTGGCTGTTGT-GGGAGTTTTTGCTATACCAC-TTTGGCTC  797
      |||||||||||||||||||| |||||||||||||||||||| ||||||||
seq2  CCTAGTGACTTGGCTGTTGTGGGGAGTTTTTGCTATACCACTTTTGGCTC  800

seq1  CTGGCAGATGGAGCTATCTTTTGGATCTGAAAATGAAAGATACA-TTAGC  846
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTGGCAGATGGAGCTATCTTTTGGATCTGAAAATGAAAGATACATTTAGC  850

seq1  TTATTTTTAAATGCCTTGGCTGCCTCAAAGGCTGGGTAC-TCCTAAACCT  895
      ||||||||||||||||||||||||||||||||||||||| |||||| | |
seq2  TTATTTTTAAATGCCTTGGCTGCCTCAAAGGCTGGGTACTTCCTAACCTT  900

seq1  CCCCCTGCTACCTTATGCCCAGTCAGGAAAGTGGCCAGTGGCCAC-TCAC  944
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  CCCCCTGCTACTTTATGCCCAGTCAGGAAAGTGGCCAGTGGCCACTTCAC  950

seq1  CCGAAATCTCACAATGCT-GGTTGGTATTCTCTTCCATTCCTC-TCTGCA  992
      |||||||||||||||||| |||||||||  |||| |||||||| ||||||
seq2  CCGAAATCTCACAATGCTGGGTTGGTAT--TCTTTCATTCCTCTTCTGCA  998

seq1  TCCTACT-GGAGCAACTCTAAT  1013
      ||||||| ||||||||||||||
seq2  TCCTACTGGGAGCAACTCTAAT  1020