BAC Information

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BAC

Clone NameB6Ng01-114F06
Chromosome14 (Build37)3 (Build37)
Map Location 84,347,646 - 84,348,16841,059,641 - 41,059,737
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043773, LOC100043279, LOC100043775, LOC100043776
Downstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114F06.bB6Ng01-114F06.g
ACCDH919874DH919875
length524895
definitionDH919874|Mus musculus domesticus DNA, BAC clone: B6Ng01-114F06, 5' end.DH919875|Mus musculus domesticus DNA, BAC clone: B6Ng01-114F06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,347,646 - 84,348,168)(41,059,641 - 41,059,737)
sequence
gaattcttcttctgttataaagaggaagaaatccagctatttttcaccta
catggtctagcgtgatattacgctatctccagtaagcaacacataaagag
ttttgtgattatatatatttaatcatatataggcagaacaatgaagaatg
aatgggctttccaaatttagagtgatactgtttcaatcaaaaaaagttaa
tcaatcaaagaagattgattgatgttccttaattcaaattatcaaatata
taggaaatagaggtcaaatattataatattatccagtattgagtagtgat
gccaaattatttactcatgatttctcttactgtagtgggatagtatggcc
ttgagtaagatattgtagggaatgacttctacgtgttatatctatttaca
ttcataaaatattatggaccttatatatcattacaaaatttgtttgaaat
aagaaggtctgatttgaatacatagtatttgatggttttactttattata
aattttataaaatttctatttctc
gaattctttgtttagatctgtaccccattttttaatggggttatttaatt
ttctggagtccagcttcttgagttctttatatatattggatattagtctc
tagtttctagtgctctctctagtttctttttggtggcactcagaactatg
agttttcctcttagatctgctttcattgtgtcccataaatttgggtatgt
tgtgtctttgttttcattaaactctaaaaagtctttaatctctttcttta
tttcttccttgactaagttatcactgagtagtgtgttgttcagcttccac
atgaatgttggttttctattatttctgttgttattgtagagcagccttag
tccattaggatgcatgggataatttcaatatttttgtatctgttgaaggc
tgttttgtgaccagttatatggtcaggtttggagaaggaaccttgaggta
ctgagaagaaagtatatccttttgttttaggataaaatgttctgtagcta
tctgttagatccatttgtttcataacttctgttagtttcaatgtgtctct
gcttaatttctgtttccaggatctgttcattgatgagagttgggtgttga
agtctcccactattattgtttgaggtgcaatatgtgctttgagcttgagt
atagattccttaatgaatgtggattcccttgcatctgtagcatagatatt
cagaattgagagttcatcttggcagattttacctttgatgagtttgaagt
gcccctccttgtcttttttgataactttgttggaagtcgattttattcga
tattagaatggctactcagcttgtttctttggattgcttgctcattgctt
ctgaggcccacgtgttctcctgagaggactgatctctgtggacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84347646_84348168
seq2: B6Ng01-114F06.b_36_559

seq1  GAATTCTTCTTCTGTTATAAAGAGGAAGAAATCCAGCTATTTTTCACCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTCTGTTATAAAGAGGAAGAAATCCAGCTATTTTTCACCTA  50

seq1  CATGGTCTAGCGTGATATTACGCTATCTCCAGTAAGCAACACATAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTCTAGCGTGATATTACGCTATCTCCAGTAAGCAACACATAAAGAG  100

seq1  TTTTGTGATTATATATATTTAATCATATATAGGCAGAACAATGAAGAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGATTATATATATTTAATCATATATAGGCAGAACAATGAAGAATG  150

seq1  AATGGGCTTTCCAAATTTAGAGTGATACTGTTTCAATCAAAAAAAGTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCTTTCCAAATTTAGAGTGATACTGTTTCAATCAAAAAAAGTTAA  200

seq1  TCAATCAAAGAAGATTGATAGATGTTCCTTAATTCAAATTATCAAATATA  250
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCAATCAAAGAAGATTGATTGATGTTCCTTAATTCAAATTATCAAATATA  250

seq1  TAGGAAATAGAGGTCAAATATTATAATATTATCCAGTATTGAGTAGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAATAGAGGTCAAATATTATAATATTATCCAGTATTGAGTAGTGAT  300

seq1  GCCAAATTATTTACTCATGATTTCTCTTACTGTAGTGGGATAGTATGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAATTATTTACTCATGATTTCTCTTACTGTAGTGGGATAGTATGGCC  350

seq1  TTGAGTAAGATATTGTAGGGAATGACTTCTACGTGTTATATCTATTTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTAAGATATTGTAGGGAATGACTTCTACGTGTTATATCTATTTACA  400

seq1  TTCATAAAATATTATGGACCTTAGATATCACTACAAAATTTGTTTGAAAT  450
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  TTCATAAAATATTATGGACCTTATATATCATTACAAAATTTGTTTGAAAT  450

seq1  AAGAAGGTCTGATTTGAATACATAGTATTTGATGGTTTTACTTTATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTCTGATTTGAATACATAGTATTTGATGGTTTTACTTTATTATA  500

seq1  AA-ATTATAAAATTTCTATTTCTC  523
      ||  ||||||||||||||||||||
seq2  AATTTTATAAAATTTCTATTTCTC  524

seq1: chr3_41059641_41059737
seq2: B6Ng01-114F06.g_68_164 (reverse)

seq1  GACTAATATCCAATATATATCAAGAACTCAAGAAGGTGGATTCCAGAAAA  50
      |||||||||||||||||||| |||||||||||||| |||| |||||||||
seq2  GACTAATATCCAATATATATAAAGAACTCAAGAAGCTGGACTCCAGAAAA  50

seq1  TCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAACAAAGAATT  97
      | ||||||||||||||||||||||||  |||| ||||||||||||||
seq2  TTAAATAACCCCATTAAAAAATGGGGTACAGATCTAAACAAAGAATT  97