BAC Information

Click to search

BAC

Clone NameB6Ng01-114G13
Chromosome3 (Build37)
Map Location 92,649,321 - 92,650,316
singlet/doubletsinglet
Overlap genenone
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp
Downstream geneLce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114G13.bB6Ng01-114G13.g
ACCDH919935DH919936
length1,2001,028
definitionDH919935|Mus musculus domesticus DNA, BAC clone: B6Ng01-114G13, 5' end.DH919936|Mus musculus domesticus DNA, BAC clone: B6Ng01-114G13, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaatgcctcttctgacctcttagacacaaaatacatatgtggcac
gtaggtataaatgcagaaactcccaccaaaaaaacaaaattaaaaaatgt
gcaaaatagaccatgatcaaaatttatttatttatctttatgagatgttt
tatttatttacatttctaatgttatcccctttcctgatttccccccaccc
agaaaccctctattccatcccctctcctcctgctactatgaaggtgtgcc
cccacccatccacccacccctgcctccacactctcgcactcacactgggg
catcaagccttcatgggaacaagggcctcttctcccattgatgactgaca
aggccatcctctgctacctatatgactggagccatgggtccctccatgtg
tactccttgggtggtggtttagaccctgggaactctggttggttgatatt
gttgttcttcccatggggttgcaaaccccttcagctccttcagtcatttc
tctaactcctccattggggatccccacactcagtgcaatagttggctgcg
agcatccacctctgtatatgtcaggctctggatgagtctctcaggagaca
gctatatcaggctcctgtcagcatgcagttgttggcatccacaatagtgt
ctgtgtttgctgactgtatatgggatggatccccaggtggggcagtcact
gaatggcctttccttcagtctctgctccacacttggtctctttattttct
ccttttgtttccccttctaagaaggaccaaagcacctacacttggtcttc
cttcttctttagctgcatgtagtatgtgaattgtgtcttgggtattcaga
gcttttgggctaatatccacttatcagtgagtgcataccatgtgtgttct
tttgtgattaggttatctcaatcagaagttatttctaggttcacccattt
gcctaagaatttcatgaattcgtcattttaatacataaacagtacttttg
ttgtataaatgtaccccattttctgtatccattcctttgttggaaggaca
tctgggttcttcagcttcttgctattattaaataaccctgcctatgaaca
tattggagcatgggtccctgtttaatattttggagaaatcttttggtaat
gccctggagtgatagcctcggtatccagggagaccattagtcccatctct

gaattccaaaattgttgtacaactttgctttcccaccatcagtggaggag
tgttccccttgctccacagcttcaccagcatgtgctgtcacttgagtttt
ttatcttagtcattctgatggatataagatggaatcttagggttgtcttt
atttgcattttcctgatgactaagggattttgatacttcattaaatgttt
cctctgttggaaattctttattcatctttgtaccccaatttttaatttga
ttatttagatttttggtgcctaatttcttgagttcttcataaattttgga
tattagccctctgtcagatgtatggttggtgaagatccttcctcagtctt
caggctggcattttgcccttagattcctaacagaggggaatatagatact
gatagccagacaggatatccagaggaaggtggatacatcaatctgcccac
aaaacctttaacccaaaattttacttgcctacaagatgtataaggataaa
aatggagcagtcaaccaatgactgccccaactgcagacatgcacaggcag
ccaagtatataacaattatagaaacaaaaacttcattggaatgtaacgta
gaacccaactgagtgtcagctcagaggaatgtattgcaaagatttcacat
gtttagaaaggaaagagacaataaggactgaggtagttaaggatggtttg
ttcaaggaatgaaggccattgctggaattgatcatggttatagtgatatt
gttctcaataataatgaatatagtttaacattgatggtgttggcaaaaga
accatactctaacgaaggagctagagaaagtacccaaagagctaacgggg
tctgcaaccctataggaggaacaacaacatgaattaaacagtacctctca
gagctgtgtctctagttgtatatgtaacagaggatgggctagtcgccttc
aatgggaagagaggcccttgtcttgggaaaacatatgccccaataccggg
aaagcagggccaggagtgggtggtttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92649321_92650316
seq2: B6Ng01-114G13.g_107_1096

seq1  TCAGTGGAGGAGTGTTCCCCTTGCTCCACAGCTTCACCAGCATGTGCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGGAGGAGTGTTCCCCTTGCTCCACAGCTTCACCAGCATGTGCTGT  50

seq1  CACTTGAGTTTTTTATCTTAGTCATTCTGATGGATATAAGATGGAATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGAGTTTTTTATCTTAGTCATTCTGATGGATATAAGATGGAATCTT  100

seq1  AGGGTTGTCTTTATTTGCATTTTCCTGATGACTAAGGGATTTTGATACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGTCTTTATTTGCATTTTCCTGATGACTAAGGGATTTTGATACTT  150

seq1  CATTAAATGTTTCCTCTGTTGGAAATTCTTTATTCATCTTTGTACCCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATGTTTCCTCTGTTGGAAATTCTTTATTCATCTTTGTACCCCAA  200

seq1  TTTTTAATTTGATTATTTAGATTTTTGGTGCCTAATTTCTTGAGTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTGATTATTTAGATTTTTGGTGCCTAATTTCTTGAGTTCTTC  250

seq1  ATAAATTTTGGATATTAGCCCTCTGTCAGATGTATGGTTGGTGAAGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTTGGATATTAGCCCTCTGTCAGATGTATGGTTGGTGAAGATCC  300

seq1  TTCCTCAGTCTTCAGGCTGGCATTTTGCCCTTAGATTCCTAACAGAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAGTCTTCAGGCTGGCATTTTGCCCTTAGATTCCTAACAGAGGGG  350

seq1  AATATAGATACTGATAGCCAGACAGGATATCCAGAGGAAGGTGGATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGATACTGATAGCCAGACAGGATATCCAGAGGAAGGTGGATACAT  400

seq1  CAATCTGCCCACAAAACCTTTAACCCAAAATTTTACTTGCCTACAAGATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGCCCACAAAACCTTTAACCCAAAATTTTACTTGCCTACAAGATG  450

seq1  TATAAGGATAAAAATGGAGCAGTCAACCAATGACTGCCCCAACTGCAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGGATAAAAATGGAGCAGTCAACCAATGACTGCCCCAACTGCAGAC  500

seq1  ATGCACAGGCAGCCAAGTATATAACAATTATAGAAACAAAAACTTCATTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAGGCAGCCAAGTATATAACAATTATAGAAACAAAAACTTCATTG  550

seq1  GAATGTAACGTAGAACCCAACTGAGTGTCAGCTCAGAGGAATGTATTGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAACGTAGAACCCAACTGAGTGTCAGCTCAGAGGAATGTATTGCA  600

seq1  AAGATTTCACATGTTTAGAAAGGAAAGAGACAATAAGGACTGAGGTAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCACATGTTTAGAAAGGAAAGAGACAATAAGGACTGAGGTAGTT  650

seq1  AAGGATGGTTTGTTCAAGGAATGAAGGCCATTGCTGGAATTGATCATGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGTTTGTTCAAGGAATGAAGGCCATTGCTGGAATTGATCATGGT  700

seq1  TATAGTGATATTGTTCTCAATAATAATGAATATAGTTTAACATTGATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGATATTGTTCTCAATAATAATGAATATAGTTTAACATTGATGGT  750

seq1  GTTGGCAAAAGAACCATACTCTAACGAAGGAGCTAGAGAAAGTACCCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCAAAAGAACCATACTCTAACGAAGGAGCTAGAGAAAGTACCCAAA  800

seq1  GAGCTAACGGGGTCTGCAACCCTATAGGAGGAACAACAACATGAATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAACGGGGTCTGCAACCCTATAGGAGGAACAACAACATGAATTAAA  850

seq1  CAGTACCTCCCAGAGCTGTGTCTCTAGTTGTATATGTAACAGAGGATGGC  900
      ||||||||| ||||||||||||||||||||||||||||||||||||||| 
seq2  CAGTACCTCTCAGAGCTGTGTCTCTAGTTGTATATGTAACAGAGGATGGG  900

seq1  CTAGTCGGCCATCAATGGGAGGAGAGGCCCTTGGTCTTGGGAAAATCATA  950
      |||||| ||| ||||||||| ||||||||||| |||||||||||| ||||
seq2  CTAGTC-GCCTTCAATGGGAAGAGAGGCCCTT-GTCTTGGGAAAA-CATA  947

seq1  TGCCCCAGTACAGGGGAATGCCAGGGCCAGGGAGTGGGTGGTTTGG  996
      ||||||| ||| ||| ||   |||||||| ||||||||||||||||
seq2  TGCCCCAATACCGGGAAA--GCAGGGCCA-GGAGTGGGTGGTTTGG  990