BAC Information

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BAC

Clone NameB6Ng01-114J17
Chromosome3 (Build37)
Map Location 50,877,630 - 51,064,264
singlet/doubletdoublet
Overlap geneCcrn4l, Elf2
Upstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
Downstream geneA630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1, Rab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114J17.bB6Ng01-114J17.g
ACCDH920087DH920088
length5181,101
definitionDH920087|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J17, 5' end.DH920088|Mus musculus domesticus DNA, BAC clone: B6Ng01-114J17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,877,630 - 50,878,151)(51,063,146 - 51,064,264)
sequence
tttgtgcatgaacacatgtatacatgggtacaaatggaggctagaagtca
acctcaaatgccctctctctctctctctctctctctctctctctctctct
ctctctctctctctctctctctgttaaaaggtctctcactgacctggggg
accccacgtcagctaggccggctgagcagtggatccccaggctctgtcgc
cccggcctccctagcacaagggtcatatgcacgtgcatgcccaacctgcc
ttacttctcaggattctgcaaaaggaacgcaggtcttcctgcttacccgg
caagcacttcaccaaccaagacatttttccaaggcagaattctttttcat
aaaccattttttttccttttgaaaataaaacacaaaacaggcagtgttcc
aactggaaatagagggaaacattcctcacataccttcctgtgaccatcac
acacacacacacacacagagagagagagagagagagagagagatatagag
agtgagagagagagagag
gaattcagagttccatctgcctctgcctcctgagtgctggaatcaaaggc
aaccaccacctggctgatttttaaaattttttggtgtgtttgtttgtttt
ctttcttttcttttaaagatctgacattggaattacaagcagttatgagt
gctaagaattaaacccaggtcctctgctaaaagcagtcaatgtttttaat
cactcaaccatctttccagcccctatgctttctaatttgttgtgtttgat
gatttccagtaatattaggcatatgtgtctgatgatcccataaacaaatt
atcactatttaataggtaaatgttttcaaactgataatcttaaacttttt
attgatatgtttaaatttgtcctatttttaatgtttattgtgtaaatcta
ctgaaaactgtgtaatgattccacagtgaattttggttattagttatatc
tgaaaggaaaaaaggacaaactccaatttcattgttcttttcttatgaat
ttggattggaactggtttcagaccttgatttcctcttctgccctgggtca
tattacatttctactgtgttaggttttgtctttcagtgcagattgagagg
ctaaaggatggaacacagccagcaggagtgcctgttttgtagatacctag
aatctacattgtccagcaccgtgtcaccgccatgaccgatcctgaaacct
gggtccaggactcatgacagcatagaatctagggcttacatcttaagaac
tgggtgtggctcacacttaatccagctctcagaggcagggatcgcttgaa
tttgaggccagcctgatctacatagcaagtttcagacctggaaaggctgc
acagtcagacttgtctcaaaaagaagtagcgaatatatagttgtaaatga
ggatattttatttgcatttatcatgttagtggatttcaagttaatgcctg
tcattgttttgctttgtttttaaaggaaaacaactatctgtgggagttct
ttagattgcttcagataaaaaacttgtcccaggaaaattaaatgactcga
aagaaaggcaattcaattgttgactcaaagctgctctgaagctctcgggg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50877630_50878151
seq2: B6Ng01-114J17.b_47_570

seq1  GAATTCTTTGTGCATGAACACATGTATACATGGGTACAAATGGAGGCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGCATGAACACATGTATACATGGGTACAAATGGAGGCTAG  50

seq1  AAGTCAACCTCAAATGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAACCTCAAATGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  100

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTAAAGGGTCTCTCACTGACC  150
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTGTTAAAAGGTCTCTCACTGACC  150

seq1  TGGGGGACCCCACGTCAGCTAGGCCGGCTGAGCAGTGGATCCCCAGGCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGACCCCACGTCAGCTAGGCCGGCTGAGCAGTGGATCCCCAGGCTC  200

seq1  TGTCGCCCCGGCCTCCCTAGCACAAGGGTCATATGCACGTGCATGCCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGCCCCGGCCTCCCTAGCACAAGGGTCATATGCACGTGCATGCCCAA  250

seq1  CCTGCCTTACTTCTCAGGATTCTGCAAATGGAACGCAGGTCTTCCTGCTT  300
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CCTGCCTTACTTCTCAGGATTCTGCAAAAGGAACGCAGGTCTTCCTGCTT  300

seq1  ACCCGGCAAGCACTTCACCAACCAAGCCATTTCTCCAAGGCAGAATTCTT  350
      |||||||||||||||||||||||||| ||||| |||||||||||||||||
seq2  ACCCGGCAAGCACTTCACCAACCAAGACATTTTTCCAAGGCAGAATTCTT  350

seq1  TTTCATAAACCATTTTTTTTCCTTTTGAAAATAAAACACAAAACAGGCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAACCATTTTTTTTCCTTTTGAAAATAAAACACAAAACAGGCAG  400

seq1  TGTTCCAACAGGAAATAGAGGGAAACATTCCTCACATACCATCCTGTGAC  450
      ||||||||| |||||||||||||||||||||||||||||| |||||||||
seq2  TGTTCCAACTGGAAATAGAGGGAAACATTCCTCACATACCTTCCTGTGAC  450

seq1  CATCACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATCACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAT  500

seq1  AGAGAGAGAGAGAGAGAGAGAG--  522
      | |||||| |||||||||||||  
seq2  ATAGAGAGTGAGAGAGAGAGAGAG  524

seq1: chr3_51063146_51064264
seq2: B6Ng01-114J17.g_68_1168 (reverse)

seq1  TCCCCCAGAGCTTCGAGA-CAGCCTTTGAGTCCACAAGTTTGAATATGCC  49
      ||||| |||||||| ||| ||| ||||||||| ||||  |||||| ||||
seq2  TCCCCGAGAGCTTC-AGAGCAG-CTTTGAGTCAACAA--TTGAAT-TGCC  45

seq1  CTTTTCTCTCTGAGTCCATTTAATATACCTGGGACAAGTATTTTTATCTT  99
        ||||| || |||| |||||||| | |||||||||||| |||||||| |
seq2  --TTTCTTTC-GAGT-CATTTAATTTTCCTGGGACAAGT-TTTTTATC-T  89

seq1  GAAGCAAATCTAAAAGAAACTCCCACAGATAGGTTGTGTTTCCTTTAAAA  149
      ||||| ||||||||   |||||||||||||| ||||| ||||||||||||
seq2  GAAGC-AATCTAAA--GAACTCCCACAGATA-GTTGT-TTTCCTTTAAAA  134

seq1  ACAAAGCAAAAACAATGACAGGCATTAACTTGAAATCCACTAACATGATT  199
      ||||||| |||||||||||||||||||||||||||||||||||||||| |
seq2  ACAAAGC-AAAACAATGACAGGCATTAACTTGAAATCCACTAACATGA-T  182

seq1  AAATGCAAATAAAATATCCTCATTTACAACTATATATTCGCTACTTCTTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAATAAAATATCCTCATTTACAACTATATATTCGCTACTTCTTT  232

seq1  TTGAGACAAGTCTGACTGTGCAGCCTTTCCAGGTCTGAAACTTGCTATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGACAAGTCTGACTGTGCAGCCTTTCCAGGTCTGAAACTTGCTATGT  282

seq1  AGATCAGGCTGGCCTCAAATTCAAGCGATCCCTGCCTCCTGAGAGCTGGA  349
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGATCAGGCTGGCCTCAAATTCAAGCGATCCCTGCCT-CTGAGAGCTGGA  331

seq1  TTAAGTGTGAGCCACACCCAGTTCTTAAGATGTAAGCCCTAGATTCTATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGTGAGCCACACCCAGTTCTTAAGATGTAAGCCCTAGATTCTATG  381

seq1  CTGTCATGAGTCCTGGACCCAGGTTTCAGGATCGGTCATGGCGGTGACAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGAGTCCTGGACCCAGGTTTCAGGATCGGTCATGGCGGTGACAC  431

seq1  GGTGCTGGACAATGTAGATTCTAGGTATCTACAAAACAGGCACTCCTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGACAATGTAGATTCTAGGTATCTACAAAACAGGCACTCCTGCT  481

seq1  GGCTGTGTTCCATCCTTTAGCCTCTCAATCTGCACTGAAAGACAAAACCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTGTTCCATCCTTTAGCCTCTCAATCTGCACTGAAAGACAAAACCT  531

seq1  AACACAGTAGAAATGTAATATGACCCAGGGCAGAAGAGGAAATCAAGGTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTAGAAATGTAATATGACCCAGGGCAGAAGAGGAAATCAAGGTC  581

seq1  TGAAACCAGTTCCAATCCAAATTCATAAGAAAAGAACAATGAAATTGGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCAGTTCCAATCCAAATTCATAAGAAAAGAACAATGAAATTGGAG  631

seq1  TTTGTCCTTTTTTCCTTTCAGATATAACTAATAACCAAAATTCACTGTGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTTTTTTCCTTTCAGATATAACTAATAACCAAAATTCACTGTGG  681

seq1  AATCATTACACAGTTTTCAGTAGATTTACACAATAAACATTAAAAATAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTACACAGTTTTCAGTAGATTTACACAATAAACATTAAAAATAGG  731

seq1  ACAAATTTAAACATATCAATAAAAAGTTTAAGATTATCAGTTTGAAAACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTAAACATATCAATAAAAAGTTTAAGATTATCAGTTTGAAAACA  781

seq1  TTTACCTATTAAATAGTGATAATTTGTTTATGGGATCATCAGACACATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTATTAAATAGTGATAATTTGTTTATGGGATCATCAGACACATAT  831

seq1  GCCTAATATTACTGGAAATCATCAAACACAACAAATTAGAAAGCATAGGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAATATTACTGGAAATCATCAAACACAACAAATTAGAAAGCATAGGG  881

seq1  GCTGGAAAGATGGTTGAGTGATTAAAAACATTGACTGCTTTTAGCAGAGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAAAGATGGTTGAGTGATTAAAAACATTGACTGCTTTTAGCAGAGG  931

seq1  ACCTGGGTTTAATTCTTAGCACTCATAACTGCTTGTAATTCCAATGTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTTTAATTCTTAGCACTCATAACTGCTTGTAATTCCAATGTCAG  981

seq1  ATCTTTAAAAGAAAAGAAAGAAAACAAACAAACACACCAAAAAATTTTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAAAAGAAAAGAAAGAAAACAAACAAACACACCAAAAAATTTTAA  1031

seq1  AAATCAGCCAGGTGGTGGTTGCCTTTGATTCCAGCACTCAGGAGGCAGAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGCCAGGTGGTGGTTGCCTTTGATTCCAGCACTCAGGAGGCAGAG  1081

seq1  GCAGATGGAACTCTGAATTC  1119
      ||||||||||||||||||||
seq2  GCAGATGGAACTCTGAATTC  1101