BAC Information

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BAC

Clone NameB6Ng01-114K07
Chromosome3 (Build37)
Map Location 21,858,126 - 22,030,247
singlet/doubletdoublet
Overlap geneLOC100040353, Tbl1xr1, LOC545506
Upstream geneEG665094, LOC100040325, 7530428D23Rik, LOC100039465
Downstream geneLOC675593, LOC100040378, LOC623751
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114K07.bB6Ng01-114K07.g
ACCDH920115DH920116
length1,1861,116
definitionDH920115|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K07, 5' end.DH920116|Mus musculus domesticus DNA, BAC clone: B6Ng01-114K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,029,057 - 22,030,247)(21,858,126 - 21,859,252)
sequence
gaattctttggcctctagactgcatctgtatttaggtctaaggtcaattt
tcttcaaggtcatttactggagctgtcattatcattatgttttccttcca
caagccctgggatttattatatcaagtatcacaaataagagaacaaggat
atagcatctcaaacagaaaaccccttggaactccctaagccaacagtcta
caagacatctcccaatacagagcaacagacatctcatcaacctttaagaa
atacctatgaggggcatgttcctatctcaccacagctaagtgtcatgcca
aattctggtgcaactcacaatatagaaaacctctgtgtgttaccactttt
caatcaccttcaacctgacttgtttcaatgttcctgttttgatggcattt
ccccttctgtttcctatttggccctgcatatcttgaaggtcattttatac
tcagctaattactacagactatgtcctgttggtaatattcttccccttaa
acaaatgctgtagcaccaagcactgaccagagctggggaagaaggcccaa
aagcatgcaaacaccttcatgattcattctaactgctctcctaccctcct
ctaagactgtctctcatactaacctgatcctacctctccacatcaagttt
atccaaattgaactcataaatcagaccacacgctagctcctccatccaaa
ctcttccatacttctaactcgtgctagaatttctatttacttaactaatg
tcatgtaacacagtactgttatctcaaaaggcagaaaccaagccatattt
tataaacactctacaacattacatactctgttctatgtctatacaattat
tcacagcagtcagcaactccaagagtgaagatattcggtccatgttctta
gctaccactaaattgtctgctgagaacaagatttcaaggctttcggtccg
gtttctttgcattgtgacttctgtcttcagccttgggctcccatttctat
gtgattaaatccactaggttgaaactaacttctaactctaagtcaatcat
caaagtctctcacaagaaacagttctcacatcaccagtggtgacaatcgc
actgctgaaagcctgttgctgcgaaggcagcctggagctcagacccgcac
aaggagagagaaatgatctggacttgaagggaactg
gaattccttatttctctgatacccaacactttatttatttattattatta
ttattttagaatgctttaaggaatactgtctgaagattcccccaaatcat
cgttcttcagttattttagacagtgcaccctgtaccaaaatgtgtcactc
ttctctctcaagctgcctcgggaacaccactccaatatctactcatgtgg
cattagttttgaggcacttaaaaaaaaattctatgaatctatcactccac
ccaatgtctactgagaggaggtagcactgacttttcttgttgctatgaca
aaatattcagcgaaagcagcttaacgaagggcagttttttctggctcctg
atccaagggctccaagtgcactgaggcagggaaggcctggggggagcatg
aggcagtccttcacatttaggcctctgtcaggaagtgtggatgccagagt
ttagctggcttcctcctttttattcagtcaggtccttctacctgtgggaa
tccaaattcacggggtgggtctttccatctcaggcaatctaatctagaaa
tcctctcagattaggcccagaggtttgccttctaggtgatcctagagcca
gtcaagtagacaggcaatactaacagcaacagagaagaaacttctctcag
gtcttagcctaagaaccaagcttcttttgagttaaattttctttttaaaa
atcattctatatactggattattgacccatgtcctatttccaattttgct
tatgccattaggagtctcagagcccctgttctctagacatagagcacggt
ctgtccaatgttttgtaattttcctatcagaagcaatgttcctctcactc
taactgttcctcttatttcttttgtagttttcacattttaggaagggaac
ttcagaccattgtgatttaagatgagaaaccataatcaccccaggtacct
ggaaggccactggtaatttatatatgtgggacttgagtagaactgaactg
gactttagtacagggctattcagaagaaacgatgtgacagatgtctgcag
cagcctcatggtccctgccagaaggctgtgtgaaagccaacccctctcca
ggtcctagtatttctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_22029057_22030247
seq2: B6Ng01-114K07.b_49_1234 (reverse)

seq1  CAGTATCCCTTC--------------TCTCTCTCCTTGGTGCTGGGGTCC  36
      |||| |||||||              ||||||||||| ||||  |||| |
seq2  CAGT-TCCCTTCAAGTCCAGATCATTTCTCTCTCCTT-GTGC--GGGT-C  45

seq1  TGAGCTCCAGCGCCTTGGCCTCTGCAGCCACAGCTTCTCAGCAGGTGCCG  86
      |||||||||| ||    ||||  ||||| ||||  | |||||| ||| ||
seq2  TGAGCTCCAG-GC---TGCCTTCGCAGCAACAGGCTTTCAGCA-GTG-CG  89

seq1  ATTGTCACCACTGGTGATTGTGAAGACTGTTTCTTGTGGAGAAGAACTTT  136
      ||||||||||||||||| |||||  |||||||||||||    |||   ||
seq2  ATTGTCACCACTGGTGA-TGTGAGAACTGTTTCTTGTG----AGAGACTT  134

seq1  TGATTGATTGACTTTAGAGTTAG-AGTTAGTTTCAACCTAGTGGATTTAA  185
      ||| |||||||| |||||||||| ||||||||||||||||||||||||||
seq2  TGA-TGATTGAC-TTAGAGTTAGAAGTTAGTTTCAACCTAGTGGATTTAA  182

seq1  TTCACATAGAAATTGGGAGCCCAAGGCTGAAGACAGAAGTCACAATGCAA  235
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  -TCACATAGAAA-TGGGAGCCCAAGGCTGAAGACAGAAGTCACAATGCAA  230

seq1  AGAAACCGGACCGAAAGCCTTGAAATCTTGTTCTCAGCAGACAATTTAGT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCGGACCGAAAGCCTTGAAATCTTGTTCTCAGCAGACAATTTAGT  280

seq1  GGTAGCTAAGAACATGGACCGAATATCTTCACTCTTGGAGTTGCTGACTG  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCTAAGAACATGGACCGAATATCTTCACTCTTGGAGTTGCTGACTG  330

seq1  CTGTGAATAATTGTATAGACATAGAACAGAGTATGTAATGTTGTAGAGTG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAATAATTGTATAGACATAGAACAGAGTATGTAATGTTGTAGAGTG  380

seq1  TTTATAAAATATGGCTTGGTTTCTGCCTTTTGAGATAACAGTACTGTGTT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAAAATATGGCTTGGTTTCTGCCTTTTGAGATAACAGTACTGTGTT  430

seq1  ACATGACATTAGTTAAGTAAATAGAAATTCTAGCACGAGTTAGAAGTATG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGACATTAGTTAAGTAAATAGAAATTCTAGCACGAGTTAGAAGTATG  480

seq1  GAAGAGTTTGGATGGAGGAGCTAGCGTGTGGTCTGATTTATGAGTTCAAT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTTTGGATGGAGGAGCTAGCGTGTGGTCTGATTTATGAGTTCAAT  530

seq1  TTGGATAAACTTGATGTGGAGAGGTAGGATCAGGTTAGTATGAGAGACAG  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATAAACTTGATGTGGAGAGGTAGGATCAGGTTAGTATGAGAGACAG  580

seq1  TCTTAGAGGAGGGTAGGAGAGCAGTTAGAATGAATCATGAAGGTGTTTGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGGAGGGTAGGAGAGCAGTTAGAATGAATCATGAAGGTGTTTGC  630

seq1  ATGCTTTTGGGCCTTCTTCCCCAGCTCTGGTCAGTGCTTGGTGCTACAGC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTGGGCCTTCTTCCCCAGCTCTGGTCAGTGCTTGGTGCTACAGC  680

seq1  ATTTGTTTAAGGGGAAGAATATTACCAACAGGACATAGTCTGTAGTAATT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTAAGGGGAAGAATATTACCAACAGGACATAGTCTGTAGTAATT  730

seq1  AGCTGAGTATAAAATGACCTTCAAGATATGCAGGGCCAAATAGGAAACAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGTATAAAATGACCTTCAAGATATGCAGGGCCAAATAGGAAACAG  780

seq1  AAGGGGAAATGCCATCAAAACAGGAACATTGAAACAAGTCAGGTTGAAGG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAATGCCATCAAAACAGGAACATTGAAACAAGTCAGGTTGAAGG  830

seq1  TGATTGAAAAGTGGTAACACACAGAGGTTTTCTATATTGTGAGTTGCACC  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAAAAGTGGTAACACACAGAGGTTTTCTATATTGTGAGTTGCACC  880

seq1  AGAATTTGGCATGACACTTAGCTGTGGTGAGATAGGAACATGCCCCTCAT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGGCATGACACTTAGCTGTGGTGAGATAGGAACATGCCCCTCAT  930

seq1  AGGTATTTCTTAAAGGTTGATGAGATGTCTGTTGCTCTGTATTGGGAGAT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATTTCTTAAAGGTTGATGAGATGTCTGTTGCTCTGTATTGGGAGAT  980

seq1  GTCTTGTAGACTGTTGGCTTAGGGAGTTCCAAGGGGTTTTCTGTTTGAGA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTAGACTGTTGGCTTAGGGAGTTCCAAGGGGTTTTCTGTTTGAGA  1030

seq1  TGCTATATCCTTGTTCTCTTATTTGTGATACTTGATATAATAAATCCCAG  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATATCCTTGTTCTCTTATTTGTGATACTTGATATAATAAATCCCAG  1080

seq1  GGCTTGTGGAAGGAAAACATAATGATAATGACAGCTCCAGTAAATGACCT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTGGAAGGAAAACATAATGATAATGACAGCTCCAGTAAATGACCT  1130

seq1  TGAAGAAAATTGACCTTAGACCTAAATACAGATGCAGTCTAGAGGCCAAA  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAAATTGACCTTAGACCTAAATACAGATGCAGTCTAGAGGCCAAA  1180

seq1  GAATTC  1191
      ||||||
seq2  GAATTC  1186

seq1: chr3_21858126_21859252
seq2: B6Ng01-114K07.g_66_1181

seq1  GAATTCCTTATTTCTCTGATACCCAACACTTTATTTATTTATTATTATTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTTCTCTGATACCCAACACTTTATTTATTTATTATTATTA  50

seq1  TTATTTTAGAATGCTTTAAGGAATACTGTCTGAAGATTCCCCCAAATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGAATGCTTTAAGGAATACTGTCTGAAGATTCCCCCAAATCAT  100

seq1  CGTTCTTCAGTTATTTTAGACAGTGCACCCTGTACCAAAATGTGTCACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCTTCAGTTATTTTAGACAGTGCACCCTGTACCAAAATGTGTCACTC  150

seq1  TTCTCTCTCAAGCTGCCTCGGGAACACCACTCCAATATCTACTCATGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTCAAGCTGCCTCGGGAACACCACTCCAATATCTACTCATGTGG  200

seq1  CATTAGTTTTGAGGCACTTAAAAAAAAATTCTATGAATCTATCACTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGTTTTGAGGCACTTAAAAAAAAATTCTATGAATCTATCACTCCAC  250

seq1  CCAATGTCTACTGAGAGGAGGTAGCACTGACTTTTCTTGTTGCTATGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTCTACTGAGAGGAGGTAGCACTGACTTTTCTTGTTGCTATGACA  300

seq1  AAATATTCAGCGAAAGCAGCTTAACGAAGGGCAGTTTTTTCTGGCTCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCAGCGAAAGCAGCTTAACGAAGGGCAGTTTTTTCTGGCTCCTG  350

seq1  ATCCAAGGGCTCCAAGTGCACTGAGGCAGGGAAGGCCTGGGGGGAGCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGGGCTCCAAGTGCACTGAGGCAGGGAAGGCCTGGGGGGAGCATG  400

seq1  AGGCAGTCCTTCACATTTAGGCCTCTGTCAGGAAGTGTGGATGCCAGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTCCTTCACATTTAGGCCTCTGTCAGGAAGTGTGGATGCCAGAGT  450

seq1  TTAGCTGGCTTCCTCCTTTTTATTCAGTCAGGTCCTTCTACCTGTGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGGCTTCCTCCTTTTTATTCAGTCAGGTCCTTCTACCTGTGGGAA  500

seq1  TCCAAATTCACGGGGTGGGTCTTTCCATCTCAGGCAATCTAATCTAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTCACGGGGTGGGTCTTTCCATCTCAGGCAATCTAATCTAGAAA  550

seq1  TCCTCTCAGATTAGGCCCAGAGGTTTGCCTTCTAGGTGATCCTAGAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCAGATTAGGCCCAGAGGTTTGCCTTCTAGGTGATCCTAGAGCCA  600

seq1  GTCAAGTAGACAGGCAATACTAACAGCAACAGAGAAGAAACTTCTCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTAGACAGGCAATACTAACAGCAACAGAGAAGAAACTTCTCTCAG  650

seq1  GTCTTAGCCTAAGAACCAAGCTTCTTTTGAGTTAAATTTTCTTTTTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGCCTAAGAACCAAGCTTCTTTTGAGTTAAATTTTCTTTTTAAAA  700

seq1  ATCATTCTATATACTGGATTATTGACCCATGTCCTATTTCCAATTTTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTATATACTGGATTATTGACCCATGTCCTATTTCCAATTTTGCT  750

seq1  TATGCCATTAGGAGTCTCAGAGCCCCTGTTCTCTAGACATAGAGCACGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCCATTAGGAGTCTCAGAGCCCCTGTTCTCTAGACATAGAGCACGGT  800

seq1  CTGTCCAATGTTTTGTAATTTTCCTATCAGAAGCAATGTTCCTCTCACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAATGTTTTGTAATTTTCCTATCAGAAGCAATGTTCCTCTCACTC  850

seq1  TAACTGTTCCTCTTATTTCTTTTGTAGTTTTCACATTTTAGGAAGGGAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTCCTCTTATTTCTTTTGTAGTTTTCACATTTTAGGAAGGGAAC  900

seq1  TTCAAGACCATTGTGATTTAAGATGAGAAACCATAATCACCCCAGGTACC  950
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTC-AGACCATTGTGATTTAAGATGAGAAACCATAATCACCCCAGGTACC  949

seq1  TGGAAGGCCAACTGGTAATTTAATAATATGTGGGACTTGAAGTAGAAACT  1000
      ||||||||| ||||||||||||   |||||||||||||| ||||| ||||
seq2  TGGAAGGCC-ACTGGTAATTTA--TATATGTGGGACTTG-AGTAG-AACT  994

seq1  GAACTGGACTTTAGTTACAGGGGCTATTCAG-AGAGACGAATGTGACAGA  1049
      |||||||||||||| |||| ||||||||||| ||| ||| ||||||||||
seq2  GAACTGGACTTTAG-TACA-GGGCTATTCAGAAGAAACG-ATGTGACAGA  1041

seq1  TGTTCTGCAGCAGGCTCAGTGTCCCCTGCCCAGGAAGCTGTGTGAATAGC  1099
      || |||||||||| |||| ||  ||||| |||| | ||||||||||   |
seq2  TG-TCTGCAGCAGCCTCA-TGGTCCCTG-CCAGAAGGCTGTGTGAAAGCC  1088

seq1  TACCCCTCT-CAGGTCCATAGTATTTCTG  1127
       |||||||| ||||||| |||||||||||
seq2  AACCCCTCTCCAGGTCC-TAGTATTTCTG  1116