BAC Information

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BAC

Clone NameB6Ng01-115A11
Chromosome3 (Build37)
Map Location 83,251,196 - 83,445,432
singlet/doubletdoublet
Overlap gene1700028M03Rik, LOC100042007
Upstream geneNpy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1, EG627094, Dchs2
Downstream geneLOC100042091, Sfrp2, LOC633522, Tlr2, D930015E06Rik, Mnd1, Trim2, EG624713, 6330505N24Rik, Arfip1, EG667788, EG627369, Tigd4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115A11.bB6Ng01-115A11.g
ACCDH920398DH920399
length1,1191,118
definitionDH920398|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A11, 5' end.DH920399|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,444,292 - 83,445,432)(83,251,196 - 83,252,351)
sequence
gaattcttatgttttccttgtgatcttagcccccttccctgtatctgaga
cactgttgagacagttgcatacagcttacatctgtcgtccttgcttctca
cttggaaataccctgttcttgcttctttctcagtatattctttttaaaat
ttaattaattttaattaattattttttacattccatattttatcccccca
tccaccctctgactgttccacatcccacacctcctccccagtccaccttg
tctccacatggatgtccccacctcccactctacctgacctctaaactccc
tggggcctccagtctcttattttttcatatttacagatatattcagtacc
tctctatctttggtgtagaatagtattttgtgtgttaatttagtctttga
tgttgatggtaagttttccagtattgaatatgaaatatcttcattctgtt
tctgaagatttcattattctaacctttcagttacacttacaagatatatg
tgtatacacacacatcacacatatgttttatgatttctaccctgagggaa
aactatgtgtataatgtattggctaattaagaaataacttatttaatcac
tattgtggttaaatatatattaattcagaaacgacttgagcatagaaagt
gatgggaatatatttaagctcacaatttacaagaaggctcttggaaaggt
tgaaaagcacaatttgcagagtgcccgagggttcaatgttacatttgctc
ttttgagcaatgaaactttggcaaaggatatgctttaatgaggccttccc
ccacccccttcctagagagcgaggacttgctatactaaaaccacccataa
tctcttacaggtgttctagaataaagaaaactactgttctgttcatcatg
tcacatggctaagacccaatcacgagggcagaggagggactgagctctta
atcgcttcagtgtaaaacagagggcaaaggccatctggacctggaagcaa
tggctttggaagatttttaataggtctgatgatgttagacttttccaatg
ggtctatgctggtcctgggtctgggactatgtctcgaggaagagcacaca
tcccatttgatttactcaa
gaattcctaggtataggtccatgtcattgcacttgcttagttctcatgtt
caagatcactaacatcattctcaacaatagcgcttttatcttagttacct
cccaacctatctcctaaattaacccttgtaatacagtttcagcatacatt
ttattctatgtgatggacctctggtttgtctgcttctaaactctaagtgt
catttgctcaaccaatttgagccacatggtcatttcaggcttgttcctgg
tagcaccttggagtccctcctgctaggatctctgagtaccatggccaaac
cattctaccccttctcactgatcccaatgctttgctcagctgaagaaaac
actgcgttgtcacactttgttgctgtcacatgggtcctaagtacagctca
tcattctttaatgctcaaatcaccccctaattcttacatgtcatcaaatc
aggagtttgaaattgcctcctacattagactcatgactttcagaaatgag
cccaactcctagggtatgctataaatgaaggacagatttgtaggcacaag
tctcacatcctatagtcagataagcatgtcttagtccattctttccttct
ttaacctatggagaggtttagaagtgtgcctaaatctttcttcccatcct
tcttccacatcagatgattggagacattaaaatgaatcagttccaaaata
aaagttattgcataaagagataggccttgtcttttccctttttctaaatt
gatctgctaactgaatgcccagaactcactctttggatttcacaatactc
atatacatccagacacacacacacgcacacacacacacactcacacactc
actatgttttttctattcaaaaactcttatctcacacaaaattgagcaca
ctactacctttttgtattttaaagaccagaatacgtaacacccgtccgtc
attttgccaataaatgacactctgatatctacctcactaagagactataa
tcgaatataggtcggaggtttacttgatacattgaaaactaccttctcag
attgtctctcaggttaaaagtcgggtatctgaaacgtagttgtcttcagc
ctttcggatcgaagagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_83444292_83445432
seq2: B6Ng01-115A11.b_44_1162 (reverse)

seq1  TTGAGTAATATCAAATGGGATGTTGTGCTCTTCCCTCTGAGACCATAAGT  50
      |||||||| ||||||||||||| ||||||||| |||| |||| ||| |||
seq2  TTGAGTAA-ATCAAATGGGATG-TGTGCTCTT-CCTC-GAGA-CAT-AGT  44

seq1  CCCAGGACCAAGGACACAGATAAGACACAATTGGAAAAAGTCTAACATCA  100
      |||| |||| ||||| |||   |||| | ||||| |||||||||||||||
seq2  CCCA-GACCCAGGAC-CAGCATAGAC-CCATTGG-AAAAGTCTAACATCA  90

seq1  TACAGACACAATAAAAATCCTTTCCAAAGCCATTTGCTTCCAGGTCCAGA  150
      | |||||  | ||||||||  ||||||||||| |||||||||||||||||
seq2  T-CAGACCTATTAAAAATC--TTCCAAAGCCA-TTGCTTCCAGGTCCAGA  136

seq1  TGGGCCTTTGCCTTCTTGTTTTACACTGAAGCCGATTTAAGAGCTCAGTC  200
      | |||||||||| || ||||||||||||||| ||| ||||||||||||| 
seq2  T-GGCCTTTGCCCTC-TGTTTTACACTGAAG-CGA-TTAAGAGCTCAGT-  181

seq1  CCCTCCTCTGCCCTCGTGCTTGGGTCTTAACCATGTGACATGAATGAACA  250
      |||||||||||||||||| |||||||||| |||||||||||| |||||||
seq2  CCCTCCTCTGCCCTCGTGATTGGGTCTTAGCCATGTGACATG-ATGAACA  230

seq1  GAACAGTAGTTTTCTTTATTCTTGGAACACCTGTTAAGAGGTTATGGGTG  300
      ||||||||||||||||||||| | ||||||||| |||||| |||||||||
seq2  GAACAGTAGTTTTCTTTATTC-TAGAACACCTG-TAAGAGATTATGGGTG  278

seq1  GTTTTATGTATAGCAAGTCCTCGCTCTCTAGGAAGGGGGTGGGGGAAGGC  350
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTA-GTATAGCAAGTCCTCGCTCTCTAGGAAGGGGGTGGGGGAAGGC  327

seq1  CTCATTAAAGCATATCCTTTGCCAAAGTTTCATTGCTCAAAAGAGCAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAAGCATATCCTTTGCCAAAGTTTCATTGCTCAAAAGAGCAAAT  377

seq1  GTAACATTGAACCCTCGGGCACTCTGCAAATTGTGC-TTTCAACCTTTCC  449
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTAACATTGAACCCTCGGGCACTCTGCAAATTGTGCTTTTCAACCTTTCC  427

seq1  AAGAGCCTTCTTGTAAATTGTGAGCTTAAATATATTCCCATCACTTTCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCTTCTTGTAAATTGTGAGCTTAAATATATTCCCATCACTTTCTA  477

seq1  TGCTCAAGTCGTTTCTGAATTAATATATATTTAACCACAATAGTGATTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAGTCGTTTCTGAATTAATATATATTTAACCACAATAGTGATTAA  527

seq1  ATAAGTTATTTCTTAATTAGCCAATACATTATACACATAGTTTTCCCTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTATTTCTTAATTAGCCAATACATTATACACATAGTTTTCCCTCA  577

seq1  CTGTAGAAATCATAAAACATATGTGTGATGTGTGTGTATACACATATATC  649
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGAAATCATAAAACATATGTGTGATGTGTGTGTATACACATATATC  627

seq1  TTGTAAGTGTAACTGAAAGGTTAGAATAATGAAATCTTCAGAAACAGAAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGTGTAACTGAAAGGTTAGAATAATGAAATCTTCAGAAACAGAAT  677

seq1  GAAGATATTTCATATTCAATACTGGAAAACTTACCATCAACATCAAAGAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATATTTCATATTCAATACTGGAAAACTTACCATCAACATCAAAGAC  727

seq1  TAAATTAACACACAAAATACTATTCTACACCAAAGATAGAGAGGTACTGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACACACAAAATACTATTCTACACCAAAGATAGAGAGGTACTGA  777

seq1  ATATATCTGTAAATATGAAAAAATAAGAGACTGGAGGCCCCAGGGAGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATCTGTAAATATGAAAAAATAAGAGACTGGAGGCCCCAGGGAGTTT  827

seq1  AGAGGTCAGGTAGAGTGGGAGGTGGGGACATCCATGTGGAGACAAGGTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCAGGTAGAGTGGGAGGTGGGGACATCCATGTGGAGACAAGGTGG  877

seq1  ACTGGGGAGGAGGTGTGGGATGTGGAACAGTCAGAGGGTGGATGGGGGGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAGGAGGTGTGGGATGTGGAACAGTCAGAGGGTGGATGGGGGGA  927

seq1  TAAAATATGGAATGTAAAAAATAATTAATTAAAATTAATTAAATTTTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATGGAATGTAAAAAATAATTAATTAAAATTAATTAAATTTTAAA  977

seq1  AAGAATATACTGAGAAAGAAGCAAGAACAGGGTATTTCCAAGTGAGAAGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATATACTGAGAAAGAAGCAAGAACAGGGTATTTCCAAGTGAGAAGC  1027

seq1  AAGGACGACAGATGTAAGCTGTATGCAACTGTCTCAACAGTGTCTCAGAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACGACAGATGTAAGCTGTATGCAACTGTCTCAACAGTGTCTCAGAT  1077

seq1  ACAGGGAAGGGGGCTAAGATTACAAGGAAAACATAAGAATTC  1141
      |||||||||||||||||||| |||||||||||||||||||||
seq2  ACAGGGAAGGGGGCTAAGATCACAAGGAAAACATAAGAATTC  1119

seq1: chr3_83251196_83252351
seq2: B6Ng01-115A11.g_67_1184

seq1  GAATTCCTAGGTATAGGTCCATGTCATTGCACTTGCTTAGTTCTCATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGGTATAGGTCCATGTCATTGCACTTGCTTAGTTCTCATGTT  50

seq1  CAAGATCACTAACATCATTCTCAACAATAGCGCTTTTATCTTAATTACCT  100
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CAAGATCACTAACATCATTCTCAACAATAGCGCTTTTATCTTAGTTACCT  100

seq1  CCCAACCTATCTCCTAAATTAACCCTTGTAATACAGTTTCAGCATAGATT  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CCCAACCTATCTCCTAAATTAACCCTTGTAATACAGTTTCAGCATACATT  150

seq1  TTATTCTATGTGATGGACCTCTGGTTTGTCTGCTTCTAAACTCTAAGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTATGTGATGGACCTCTGGTTTGTCTGCTTCTAAACTCTAAGTGT  200

seq1  CATTTGCTCAACCAATTTGAGCCACATGGTCATTTCAGGCTTGTTCCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGCTCAACCAATTTGAGCCACATGGTCATTTCAGGCTTGTTCCTGG  250

seq1  TAGCACCTTGGAGTCCCTCCTGCTAGGATCTCTGAGTACCATGGCCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACCTTGGAGTCCCTCCTGCTAGGATCTCTGAGTACCATGGCCAAAC  300

seq1  CATTCTACCCCTTCTCACTGATCCCAATGCTTTGCTCAGCTGAAGAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTACCCCTTCTCACTGATCCCAATGCTTTGCTCAGCTGAAGAAAAC  350

seq1  ACTGCGTTGTCACACTTTGTTGCTGTCACATGGGTCCTAGGTACAGCTCA  400
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  ACTGCGTTGTCACACTTTGTTGCTGTCACATGGGTCCTAAGTACAGCTCA  400

seq1  TCATTCTTTAATGCTCAAATCACCCCCTAATTCTTACATGTCATCAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTTAATGCTCAAATCACCCCCTAATTCTTACATGTCATCAAATC  450

seq1  AGGAGTTTGAAATTGCCTCCTACATTAGACTCATGACTTTCAGAAATGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTTGAAATTGCCTCCTACATTAGACTCATGACTTTCAGAAATGAG  500

seq1  CCCAACTCCTAGGGTATGCTATAAATGAAGGACAGATTTGTAGGCACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACTCCTAGGGTATGCTATAAATGAAGGACAGATTTGTAGGCACAAG  550

seq1  TCTCACATCCTATAGTCAGATAAGCATGTCTTAGTCCATTCTTTCCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATCCTATAGTCAGATAAGCATGTCTTAGTCCATTCTTTCCTTCT  600

seq1  TTAACCTATGGAGAGGTTTAGAAGTGTGCCTAAATCTTTCTTCCCATCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCTATGGAGAGGTTTAGAAGTGTGCCTAAATCTTTCTTCCCATCCT  650

seq1  TCTTCCACATCAGATGATTGGAAACATTAAAATGAATCAGTTCCAAAATA  700
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TCTTCCACATCAGATGATTGGAGACATTAAAATGAATCAGTTCCAAAATA  700

seq1  AAAGTTATTGCATAAAGAGATAGGCCTTGTCTTTTCCCTTTTTCTAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATTGCATAAAGAGATAGGCCTTGTCTTTTCCCTTTTTCTAAATT  750

seq1  GATCTGCTAACTGAATGCCCAGAACTCACTCTTTGGATTTCACACATACT  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GATCTGCTAACTGAATGCCCAGAACTCACTCTTTGGATTTCACA-ATACT  799

seq1  CATATACATCCAGACACACACACACACACACACACACACACACACACACA  850
      ||||||||||||||||||||||||| ||||||||||||||| ||||||| 
seq2  CATATACATCCAGACACACACACACGCACACACACACACACTCACACACT  849

seq1  CACTAATGTTTTTTCCAATTAAAAAACTCTTATCTCAGACAAAAATTGAG  900
      |||| ||||||||| | ||| |||||||||||||||| || |||||||||
seq2  CACT-ATGTTTTTT-CTATTCAAAAACTCTTATCTCACAC-AAAATTGAG  896

seq1  CACAACTATTACCATTTTGTAATTTATAAAGTACAAGATATACATAACAC  950
      ||| |||| |||| |||||||  || ||||| || ||| |||| ||||||
seq2  CAC-ACTACTACCTTTTTGTA--TTTTAAAG-ACCAGA-ATACGTAACAC  941

seq1  CCAGTCCATCATTTTTGCCAATTAAATAGAACACTCTGTTATCTACCCTA  1000
      || |||| ||| ||||||||| |||||   |||||||| |||||| ||| 
seq2  CC-GTCCGTCA-TTTTGCCAA-TAAAT--GACACTCTGATATCTA-CCTC  985

seq1  ACTTAAAAGACTTATAAATCTAAATATTATGTCCTGGGTTTAATTTGTAT  1050
      || ||| |||| ||| ||||  |||| || |||   |||||| ||  || 
seq2  AC-TAAGAGAC-TAT-AATC-GAATA-TAGGTCGGAGGTTTACTTGATAC  1030

seq1  ACTATTTGAAAACTACCTTCTCAGATATGTCCTCTCAATGTTAAATAGTC  1100
      |    ||||||||||||||||||||| ||| ||||| | |||||| ||||
seq2  A----TTGAAAACTACCTTCTCAGAT-TGT-CTCTC-AGGTTAAA-AGTC  1072

seq1  TGGGTTATCTATGAGACTATAAGTAGTCTTTCAACCCTATCAGAAATCGA  1150
        || ||||  ||| ||    ||| |||||   | ||| || |  |||||
seq2  --GGGTATC--TGAAAC--GTAGTTGTCTT--CAGCCTTTCGG--ATCGA  1112

seq1  AGAGAG  1156
      ||||||
seq2  AGAGAG  1118