BAC Information

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BAC

Clone NameB6Ng01-115A24
Chromosome3 (Build37)
Map Location 29,995,731 - 30,111,220
singlet/doubletdoublet
Overlap genenone
Upstream gene6130401L20Rik, LOC100040676, Evi1
Downstream geneMds1, LOC100040727, LOC100040734, LOC100040749, Arpm1, Mynn, Lrrc34, 4930558O21Rik, E230002P03Rik, Samd7, Tloc1, Gpr160, Phc3, LOC100040809, Prkci, Skil, Cldn11, Slc7a14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115A24.bB6Ng01-115A24.g
ACCDH920424DH920425
length1,1311,023
definitionDH920424|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A24, 5' end.DH920425|Mus musculus domesticus DNA, BAC clone: B6Ng01-115A24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,995,731 - 29,996,839)(30,110,198 - 30,111,220)
sequence
gaattcacacacggttgggaaagaatatgcacaggagtatattggcttta
aggggtagcatcacttttaatgtttgtggtgtggtttggaaattagcgtt
ctttgaaagtaaaatttctgaaaggaccattgacatatatatacatgtac
gcacacacacacacacacacacacacacacacacacacacacacacacac
acacacatgtcaaaacttctatgagtagttgattcagatcccaaactgcc
tgccagtttttctcacttcaaactgtagtatgccccactgccaagctgat
ttgaacaacccccaggtttctaagcagccttttcatggagatgatattct
taaaaggggcatcaggggctcttgtcacctcatattctcctctagatgta
aacccaggttagtttcctggcaggtcctcaataagcagttgtgggttctt
cctacgctgagcttgggttaattatgctctgtaattgtgaagtcagggcc
tgtctcccaggcaagatccaaaatggcaagtcatttcctgttctcaaatc
caaaggagatactgacttctgattctcgtttcctcactctcagtgatggc
gtggcttccaggagctgcactgaacggattctctggagaagaccagggtt
ctaaacacctcactgtggggggcctgccctggagaatatagaaaatgatt
ctggttatctcagttgataacactacaggacattgtttctaaactcctac
catgctgtgagtcgtaaggtggagggaagctttgtctgcttggtgctttg
ggcaagtaggagggtgtctgcacagggtctagggaaaggaatctgggcac
atgtgtgagggcaaaggcacctactttttaattgaacagatcctcggatt
ttatagcatattaaaaaggaaaggtagcaacattggagcatctgtgggtt
tcccatataaatccaaccgctaaataatagtaagcagcaatttcctcaga
actcattttttgagattaggttaagcaacttcttatgtgtgtagtaaaac
tggcaaggtgtttccaagcccacactcagctgtctttggtttatttctct
ggtcagtgaaaatcagcgcttttagcaactg
gaattctctgtgggacatttccgttcatttagaaggctgatgagttcctt
gatggactctttttgcttgtttctacctcttccttgtgtttcctttttga
ttgtcgctaatcggactatgtaagcaacacagggcgatggtaaaattaaa
ataccacataagcaggtctcctttgtctttgtagagaggccatgttgttc
tgtggcttctttgcatgtaattccaaaaggtttatgtgaaattgtataca
cacataaacacattataggcttatagacagaagtctgtttcttgcaaatg
tctacctatgttttcataaacctgctttagttttgcaataatatgtcaaa
gattattttactctgtttaatttgttcatttaaatatttatctaattata
taaacacacatatcccaattatttaatctgtctggctcagaggcacacac
aatcagtatttttattatgtatctttctaggtacatgtgtttttattaat
ttacacaaatctgcttttctcttctttatgctaacagtatatagtgagca
cacattttttgagcttgcttttttgaccacttaataaatgttcttgtggt
catccaactgcagtgtgtaaaggacttcttcctttttgttgattgcacag
cagcctaatgaatagatgtatcattctttagctattcctgcatggttgag
cattggggttgtttttattattatactttctcactactgcaaacaatgct
cagtgagtaactaggttacatttctaattatttcactgtttgctcattta
ccttgccaatactaatcaattgtctacagagcagcaatatgggttttttt
ttttctttcttaagcatagcatgatgcataaataaaatgatcctttctgc
cagtcataggtaaaaagtagtacttcagtgaataacattcctcctactta
tggcactaggtttttttttttttctagatagttgagtatctcgcatgttt
cttccctggctcacatatctttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_29995731_29996839
seq2: B6Ng01-115A24.b_50_1180

seq1  GAATTCACACACGGTTGGGAAAGAATATGCACAGGAGTATATTGGCTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACGGTTGGGAAAGAATATGCACAGGAGTATATTGGCTTTA  50

seq1  AGGGGTAGCATCACTTTTAATGTTTGTGGTGTGGTTTGGAAATTAGCGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTAGCATCACTTTTAATGTTTGTGGTGTGGTTTGGAAATTAGCGTT  100

seq1  CTTTGAAAGTAAAATTTCTGAAAGGACCATTGACATATATATACATGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAGTAAAATTTCTGAAAGGACCATTGACATATATATACATGTAC  150

seq1  GCACACACACACACACACACACACACACACACACACACACACACACACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACACACACACACACACACACACACACACACACACACACACACACAC  200

seq1  ACACACATGTCAAAACTTCTATGAGTAGTTGATTCAGATCCCAAACTGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATGTCAAAACTTCTATGAGTAGTTGATTCAGATCCCAAACTGCC  250

seq1  TGCCAGTTTTTCTCACTTCAAACTGTAGTATGCCCCACTGCCAAGCTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTTTTTCTCACTTCAAACTGTAGTATGCCCCACTGCCAAGCTGAT  300

seq1  TTGAACAACCCCCAGGTTTCTAAGCAGCCTTTTCATGGAGATGATATTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAACCCCCAGGTTTCTAAGCAGCCTTTTCATGGAGATGATATTCT  350

seq1  TAAAAGGGGCATCAGGGGCTCTTGTCACCTCATATTCTCCTCTAGATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGGCATCAGGGGCTCTTGTCACCTCATATTCTCCTCTAGATGTA  400

seq1  AACCCAGGTTAGTTTCCTGGCAGGTCCTCAATAAGCAGTTGTGGGTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGGTTAGTTTCCTGGCAGGTCCTCAATAAGCAGTTGTGGGTTCTT  450

seq1  CCTACGCTGAGCTTGGGTTAATTATGCTCTGTAATTGTGAAGTCAGGGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACGCTGAGCTTGGGTTAATTATGCTCTGTAATTGTGAAGTCAGGGCC  500

seq1  TGTCTCCCAGGCAAGATCCAAAATGGCAAGTCATTTCCTGTTCTCAAATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCCAGGCAAGATCCAAAATGGCAAGTCATTTCCTGTTCTCAAATC  550

seq1  CAAAGGAGATACTGACTTCTGATTCTCGTTTCCTCACTCTCAGTGATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGATACTGACTTCTGATTCTCGTTTCCTCACTCTCAGTGATGGC  600

seq1  GTGGCTTCCAGGAGCTGCACTGAACGGATTCTCTGGAGAAGACCAGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCCAGGAGCTGCACTGAACGGATTCTCTGGAGAAGACCAGGGTT  650

seq1  CTAAACACCTCACTGTGGGGGGCCTGCCCTGGAGAATATAGAAAATGATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACACCTCACTGTGGGGGGCCTGCCCTGGAGAATATAGAAAATGATT  700

seq1  CTGGTTATCTCAGTTGATAACACTACAGGACATTGTTTCTAAACTCCTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTATCTCAGTTGATAACACTACAGGACATTGTTTCTAAACTCCTAC  750

seq1  CATGCTGTGAGTCGTAAGGTGGAGGGAAGC-TTGTCTGCTTGGTGCTTTG  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATGCTGTGAGTCGTAAGGTGGAGGGAAGCTTTGTCTGCTTGGTGCTTTG  800

seq1  GGCAAGTAGGAGGGTGTCTGCACAGGGCCTAGGG-AAGGAATCT-GGCAC  847
      ||||||||||||||||||||||||||| |||||| ||||||||| |||||
seq2  GGCAAGTAGGAGGGTGTCTGCACAGGGTCTAGGGAAAGGAATCTGGGCAC  850

seq1  ATGTGTGAGGGCAAAGGCACCTACTTTTTAATTGTACAGATCCTCGGATT  897
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ATGTGTGAGGGCAAAGGCACCTACTTTTTAATTGAACAGATCCTCGGATT  900

seq1  TTATAGCATATTAAAAAGG-AAGGTAGCAACA-TGGAGCATCTGTGGTTT  945
      ||||||||||||||||||| |||||||||||| |||||||||||||| ||
seq2  TTATAGCATATTAAAAAGGAAAGGTAGCAACATTGGAGCATCTGTGGGTT  950

seq1  TCCCATATAAATCCAACCGCTAATAAATAGTAAGCAGC-ATTTCCTCAG-  993
      |||||||||||||||||||||||  ||||||||||||| |||||||||| 
seq2  TCCCATATAAATCCAACCGCTAAATAATAGTAAGCAGCAATTTCCTCAGA  1000

seq1  ACTCATTTTT---GAGTAGGTTAAGCAACT--CTATGTGTGTAGT-AAAC  1037
      ||||||||||   || ||||||||||||||   |||||||||||| ||||
seq2  ACTCATTTTTTGAGATTAGGTTAAGCAACTTCTTATGTGTGTAGTAAAAC  1050

seq1  T-GCAAAGTG-TTCCAAG-CCACACTCAGCTGTCTT--GTTTATTTCTCT  1082
      | |||| ||| ||||||| |||||||||||||||||  ||||||||||||
seq2  TGGCAAGGTGTTTCCAAGCCCACACTCAGCTGTCTTTGGTTTATTTCTCT  1100

seq1  -GTCAGTG-AAATCA--GCTTTTAGCAACTG  1109
       ||||||| ||||||  ||||||||||||||
seq2  GGTCAGTGAAAATCAGCGCTTTTAGCAACTG  1131

seq1: chr3_30110198_30111220
seq2: B6Ng01-115A24.g_68_1090 (reverse)

seq1  CAAAGATATGTGAGCAAGGAAAGAAACATGCGAGATACTCAACTATCTGA  50
      ||||||||||||||| ||| |||||||||||||||||||||||||||| |
seq2  CAAAGATATGTGAGCCAGGGAAGAAACATGCGAGATACTCAACTATCT-A  49

seq1  GAAAAAAAAAAAAACCCTAGTGCCATAAGTAGGAGGAATGTTATTCACTG  100
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAAAAAAA-CCTAGTGCCATAAGTAGGAGGAATGTTATTCACTG  98

seq1  AAGTACTACTTTTTACCTATGACTGGCAGAAAGGATCA-TTTATTTATGC  149
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AAGTACTACTTTTTACCTATGACTGGCAGAAAGGATCATTTTATTTATGC  148

seq1  ATCATGCTATGCTTAAGAA--GAAAAAAAAAACCCATATTTGCTGCTCTG  197
      |||||||||||||||||||   |||||||||||||||| |||||||||||
seq2  ATCATGCTATGCTTAAGAAAGAAAAAAAAAAACCCATA-TTGCTGCTCTG  197

seq1  TAGACAATTGATTAGTATTGGCAAGGTAAATGAGCAAACAGTGAAATAAT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATTGATTAGTATTGGCAAGGTAAATGAGCAAACAGTGAAATAAT  247

seq1  TAGAAATGTAACCTAGTTACTCACTGAGCATTGTTTGCAGTAGTGAGAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGTAACCTAGTTACTCACTGAGCATTGTTTGCAGTAGTGAGAAA  297

seq1  GTATAATAATAAAAACAACCCCAATGCTCAACCATGCAGGAATAGCTAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAATAATAAAAACAACCCCAATGCTCAACCATGCAGGAATAGCTAAA  347

seq1  GAATGATACATCTATTCATTAGGCTGCTGTGCAATCAACAAAAAGGAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGATACATCTATTCATTAGGCTGCTGTGCAATCAACAAAAAGGAAGA  397

seq1  AGTCCTTTACACACTGCAGTTGGATGACCACAAGAACATTTATTAAGTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTTTACACACTGCAGTTGGATGACCACAAGAACATTTATTAAGTGG  447

seq1  TCAAAAAAGCAAGCTCAAAAAATGTGTGCTCACTATATACTGTTAGCATA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAGCAAGCTCAAAAAATGTGTGCTCACTATATACTGTTAGCATA  497

seq1  AAGAAGAGAAAAGCAGATTTGTGTAAATTAATAAAAACACATGTACCTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGAGAAAAGCAGATTTGTGTAAATTAATAAAAACACATGTACCTAG  547

seq1  AAAGATACATAATAAAAATACTGATTGTGTGTGCCTCTGAGCCAGACAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATACATAATAAAAATACTGATTGTGTGTGCCTCTGAGCCAGACAGA  597

seq1  TTAAATAATTGGGATATGTGTGTTTATATAATTAGATAAATATTTAAATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAATTGGGATATGTGTGTTTATATAATTAGATAAATATTTAAATG  647

seq1  AACAAATTAAACAGAGTAAAATAATCTTTGACATATTATTGCAAAACTAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAATTAAACAGAGTAAAATAATCTTTGACATATTATTGCAAAACTAA  697

seq1  AGCAGGTTTATGAAAACATAGGTAGACATTTGCAAGAAACAGACTTCTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGTTTATGAAAACATAGGTAGACATTTGCAAGAAACAGACTTCTGT  747

seq1  CTATAAGCCTATAATGTGTTTATGTGTGTATACAATTTCACATAAACCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAGCCTATAATGTGTTTATGTGTGTATACAATTTCACATAAACCTT  797

seq1  TTGGAATTACATGCAAAGAAGCCACAGAACAACATGGCCTCTCTACAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATTACATGCAAAGAAGCCACAGAACAACATGGCCTCTCTACAAAG  847

seq1  ACAAAGGAGACCTGCTTATGTGGTATTTTAATTTTACCATCGCCCTGTGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAGACCTGCTTATGTGGTATTTTAATTTTACCATCGCCCTGTGT  897

seq1  TGCTTACATAGTCCGATTAGCGACAATCAAAAAGGAAACACAAGGAAGAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACATAGTCCGATTAGCGACAATCAAAAAGGAAACACAAGGAAGAG  947

seq1  GTAGAAACAAGCAAAAAGAGTCCATCAAGGAACTCATCAGCCTTCTAAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAACAAGCAAAAAGAGTCCATCAAGGAACTCATCAGCCTTCTAAAT  997

seq1  GAACGGAAATGTCCCACAGAGAATTC  1023
      ||||||||||||||||||||||||||
seq2  GAACGGAAATGTCCCACAGAGAATTC  1023