BAC Information

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BAC

Clone NameB6Ng01-115C18
Chromosome3 (Build37)
Map Location 65,012,001 - 65,158,015
singlet/doubletdoublet
Overlap geneKcnab1
Upstream gene4930518C23Rik, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneSsr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2, Ptx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115C18.bB6Ng01-115C18.g
ACCDH920506DH920507
length1,0821,082
definitionDH920506|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C18, 5' end.DH920507|Mus musculus domesticus DNA, BAC clone: B6Ng01-115C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,012,001 - 65,012,815)(65,156,910 - 65,158,015)
sequence
gaattctatgctaaaatgatccaggcctggcctctctttggtagtgaggc
ttttaatgactctttctatctcctttggggttataggtctacttaaattg
tttttctgatctttatttaactctggtaagtgatatctattgagaaaatt
atccatttcttttagatttttccaattttgtggagtacaagtttttgaag
tatgacccaataattttttggatttcttcagtgtctgttgttatgtcccc
ctttctgtttctgattttgttaatgtgaatatccaatctctgtcttttat
tagtttggatagggtttgtctatcttgttgattttctcaaagacctaact
ctttgtttcattcattttattgattctttctattgttctttttgtttcta
ttttattgatttacatctttatttttattttttcctgtaatctattcctc
ttggatatatttgcttctttttgctctagagcctttagttgtgctgttaa
gttgctagtatggtctaacaagacagatagtgctgtgacctttcctctta
gcactgctttcattgtgtcccctaagttttaggtatgttgtgccttcatt
tcattgaattctaggaagcctttaatgtctttttattgtttctgttcctg
ttgtaatccagctttaatctgtggtggtctgacgggatacaaagggttat
ttcaattttcttgtatctgttgagacttgcctttgctaaatttagataaa
tttctataagatggatcttaaatgtcacctatccaagagttacctcatgc
atgtcagccgggtggtcttaggaagcatatttcttggggtctcaatgtct
taagaaaactgctaggagaatgtatctctgagaagatgcctaagctctga
ttctgttgctctgctgtgacattgtgttgtagaggcagagggctagatgt
gatctgggactggctttgttgcctctccttattcatttgccacactttcc
aggatacttgatacttcatggaacccagacttgagatttttgttttctgg
gggttttggttgggttttggttttggctggtt
gaattccagtgattgaaatgaagttaggtagcagaagcccagcaagaaaa
gacaggattgagataaagttgccagaggacaacaaaccaaactgtatggg
ctaagaggtagatggggttgttgccatttttaggtgagggagacatcctg
tcgtcggagtttgtgtctcagaatgccatccctgtctatgttgtgaagaa
tcagtgaaagaggaagcctctgggagcaatctgccatgatgcaagagtga
cccggaggggggttttggtaattaagactgagtgtggtacagagtgggcg
ggaaggaatcaaggtctcctcccagatccctgactgtccacagcgaggag
ggcaggggtagaaaacctattttggatgtgaggaactggagggtatgtgg
agctggtgtgggtgaatccctgggttaatgaatggccacggtgggaccct
gctgtgtgaagaagtgcagcttactccctgtgctaagtcagagagagcag
tggaagtctgaagagaaaaagagaagggttttcattgccagcatgcagtc
agagagaggaccctgtgcggtcagtcagctgactgaccaggagccagagg
ggagggacaatttagagccaagaacagagggtacttcaagaaggaggccc
acaggatggaacacaaggaacaatcacgtcagaggctgcagaagtgtctg
ccacacacacacacacacacacacacacacacacacacacacacacatcc
tgcagagcatgacgagagccattttagtgtcactgaaagaccaagccaag
gtgtcgtgagggaagaatggagggcggcagtttggagacacttgcacaat
tctttcacaggtttcaaggaaagaagcacagaaataatattccaggaatg
ccagagagtcttttttagatggaagaggtgagagactgtctggtatcatg
aggatgacttagcaggaggttacccagatgagaccacctggaaatggaag
ggagagagaaactctgggctcagagggagaggcagttgtttggggctggg
atcccccacaaaggacaggtctgtgggtttgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65012001_65012815
seq2: B6Ng01-115C18.b_311_1125

seq1  TGTTAATGTGAATATCCAATCTCTGTCTTTTATTAGTTTGGATAGGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATGTGAATATCCAATCTCTGTCTTTTATTAGTTTGGATAGGGTTT  50

seq1  GTCTATCTTGTTGATTTTCTCAAAGACCTAACTCTTTGTTTCATTCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATCTTGTTGATTTTCTCAAAGACCTAACTCTTTGTTTCATTCATTT  100

seq1  TATTGATTCTTTCTATTGTTCTTTTTGTTTCTATTTTATTGATTTACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATTCTTTCTATTGTTCTTTTTGTTTCTATTTTATTGATTTACATC  150

seq1  TTTATTTTTATTTTTTCCTGTAATCTATTCCTCTTGGATATATTTGCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTTATTTTTTCCTGTAATCTATTCCTCTTGGATATATTTGCTTC  200

seq1  TTTTTGCTCTAGAGCCTTTAGTTGTGCTGTTAAGTTGCTAGTATGGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTCTAGAGCCTTTAGTTGTGCTGTTAAGTTGCTAGTATGGTCTA  250

seq1  ACAAGACAGATAGTGCTGTGACCTTTCCTCTTAGCACTGCTTTCATTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGACAGATAGTGCTGTGACCTTTCCTCTTAGCACTGCTTTCATTGTG  300

seq1  TCCCCTAAGTTTTAGGTATGTTGTGCCTTCATTTCATTGAATTCTAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAAGTTTTAGGTATGTTGTGCCTTCATTTCATTGAATTCTAGGAA  350

seq1  GCCTTTAATGTCTTTTTATTGTTTCTGTTCCTGTTGTAATCCAGCTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATGTCTTTTTATTGTTTCTGTTCCTGTTGTAATCCAGCTTTAA  400

seq1  TCTGTGGTGGTCTGACGGGATACAAAGGGTTATTTCAATTTTCTTGTATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGTGGTCTGACGGGATACAAAGGGTTATTTCAATTTTCTTGTATC  450

seq1  TGTTGAGACTTGCCTTTGCTAAATTTAGATAAATTTCTATAAGATGGATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGACTTGCCTTTGCTAAATTTAGATAAATTTCTATAAGATGGATC  500

seq1  TTAAATGTCACCTATCCAAGAGTTACCTCATGCATGTCAGCCGGGTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTCACCTATCCAAGAGTTACCTCATGCATGTCAGCCGGGTGGTC  550

seq1  TTAGGAAGCATATTTCTT-GGGTCTCAATGTCTTAAGAAAAACTGCTAGG  599
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  TTAGGAAGCATATTTCTTGGGGTCTCAATGTCTTAAG-AAAACTGCTAGG  599

seq1  AGAATGTATCTCTGAGAAGATGCCTAAGCTCTGATTCTGTTGCTCTGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTATCTCTGAGAAGATGCCTAAGCTCTGATTCTGTTGCTCTGCTG  649

seq1  TGACATTGTGTTGTAAGAGGCAGAGGGCTAGATGTGATCTGGGACTGGCT  699
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TGACATTGTGTTGT-AGAGGCAGAGGGCTAGATGTGATCTGGGACTGGCT  698

seq1  TTGTTGCCTCTCCTTATTCATTTTGCCACAACTTTCCAAGATACTTGATA  749
      |||||||||||||||||||| |||||||| |||||||| |||||||||||
seq2  TTGTTGCCTCTCCTTATTCA-TTTGCCAC-ACTTTCCAGGATACTTGATA  746

seq1  CTTCATTGGAACCCAGACTTGAGATTTTTGTTTTCTGGGGTGTTTT--TT  797
      ||||| |||||||||||||||||||||||||||||||||| |||||  ||
seq2  CTTCA-TGGAACCCAGACTTGAGATTTTTGTTTTCTGGGG-GTTTTGGTT  794

seq1  GGTTTTTGGTTTT---TGGTT  815
      || ||||||||||   |||||
seq2  GGGTTTTGGTTTTGGCTGGTT  815

seq1: chr3_65156910_65158015
seq2: B6Ng01-115C18.g_66_1147 (reverse)

seq1  ACAAACCCAGCTGGACCCTGTCCTTGGTGGGGGTCCCCAGCCCCAAGCAC  50
      ||||||||| | |   ||||||||| |||||||  ||||||||||| || 
seq2  ACAAACCCA-CAG--ACCTGTCCTTTGTGGGGGATCCCAGCCCCAAACAA  47

seq1  CTGCCTCCTCCCTCTGAGCCCAGTGTTCTCTCTCCTCCCTTCCCAGTCTC  100
      |||||| |||||||||||||||| ||| ||||| |||||||||   ||  
seq2  CTGCCT-CTCCCTCTGAGCCCAGAGTT-TCTCT-CTCCCTTCCATTTC--  92

seq1  ACAGTGGGTCTCATCTGGGATACCCTCCTGCTAGGTCATCCTCAATGGTA  150
       |||  ||||||||||||| || |||||||||| ||||||||| ||| ||
seq2  -CAGGTGGTCTCATCTGGG-TAACCTCCTGCTAAGTCATCCTC-ATGATA  139

seq1  CCCAGACAGTCTCTCACCTC-TCCATCTATAAAAAGAACTCTCCTGGCAT  199
       ||||||||||||||||||| |||||||| |||||| ||||| |||||||
seq2  -CCAGACAGTCTCTCACCTCTTCCATCTA-AAAAAG-ACTCT-CTGGCAT  185

seq1  TCCTTGGATTATTATTTTCTGTGCTTCTTTCCTTTGAAAACCTGCTGAAA  249
      ||| |||| ||||| |||||||||||||||||||   ||||||| |||||
seq2  TCC-TGGAATATTA-TTTCTGTGCTTCTTTCCTT--GAAACCTG-TGAAA  230

seq1  GAATTTGTGCAAGTTGTCTCCAAACCTGCCTGCCCTCCATTCTTCCCTCA  299
      ||| ||||||||| |||||||||| ||||| |||||||||||||||||||
seq2  GAA-TTGTGCAAG-TGTCTCCAAA-CTGCC-GCCCTCCATTCTTCCCTCA  276

seq1  CGACACCTTGGCCTTGGTCTTTCAGTGACACTAAAATGGCTCTCGTCATG  349
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CGACACCTTGG-CTTGGTCTTTCAGTGACACTAAAATGGCTCTCGTCATG  325

seq1  CTCTGCAGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  375

seq1  TGTGTGGCAGACACTTCTGCAGCCTCTGACGTGATTGTTCCTTGTGTTCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGCAGACACTTCTGCAGCCTCTGACGTGATTGTTCCTTGTGTTCC  425

seq1  ATCCTGTGGGCCTCCTTCTTGAAGTACCCTCTGTTCTTGGCTCTAAATTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTGGGCCTCCTTCTTGAAGTACCCTCTGTTCTTGGCTCTAAATTG  475

seq1  TCCCTCCCCTCTGGCTCCTGGTCAGTCAGCTGACTGACCGCACAGGGTCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCCTCTGGCTCCTGGTCAGTCAGCTGACTGACCGCACAGGGTCC  525

seq1  TCTCTCTGACTGCATGCTGGCAATGAAAACCCTTCTCTTTTTCTCTTCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTGACTGCATGCTGGCAATGAAAACCCTTCTCTTTTTCTCTTCAG  575

seq1  ACTTCCACTGCTCTCTCTGACTTAGCACAGGGAGTAAGCTGCACTTCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACTGCTCTCTCTGACTTAGCACAGGGAGTAAGCTGCACTTCTTC  625

seq1  ACACAGCAGGGTCCCACCGTGGCCATTCATTAACCCAGGGATTCACCCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAGGGTCCCACCGTGGCCATTCATTAACCCAGGGATTCACCCAC  675

seq1  ACCAGCTCCACATACCCTCCAGTTCCTCACATCCAAAATAGGTTTTCTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCTCCACATACCCTCCAGTTCCTCACATCCAAAATAGGTTTTCTAC  725

seq1  CCCTGCCCTCCTCGCTGTGGACAGTCAGGGATCTGGGAGGAGACCTTGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCCCTCCTCGCTGTGGACAGTCAGGGATCTGGGAGGAGACCTTGAT  775

seq1  TCCTTCCCGCCCACTCTGTACCACACTCAGTCTTAATTACCAAAACCCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCGCCCACTCTGTACCACACTCAGTCTTAATTACCAAAACCCCC  825

seq1  CTCCGGGTCACTCTTGCATCATGGCAGATTGCTCCCAGAGGCTTCCTCTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGGTCACTCTTGCATCATGGCAGATTGCTCCCAGAGGCTTCCTCTT  875

seq1  TCACTGATTCTTCACAACATAGACAGGGATGGCATTCTGAGACACAAACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATTCTTCACAACATAGACAGGGATGGCATTCTGAGACACAAACT  925

seq1  CCGACGACAGGATGTCTCCCTCACCTAAAAATGGCAACAACCCCATCTAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACGACAGGATGTCTCCCTCACCTAAAAATGGCAACAACCCCATCTAC  975

seq1  CTCTTAGCCCATACAGTTTGGTTTGTTGTCCTCTGGCAACTTTATCTCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAGCCCATACAGTTTGGTTTGTTGTCCTCTGGCAACTTTATCTCAA  1025

seq1  TCCTGTCTTTTCTTGCTGGGCTTCTGCTACCTAACTTCATTTCAATCACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTCTTTTCTTGCTGGGCTTCTGCTACCTAACTTCATTTCAATCACT  1075

seq1  GGAATTC  1106
      |||||||
seq2  GGAATTC  1082