BAC Information

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BAC

Clone NameB6Ng01-115M01
Chromosome3 (Build37)
Map Location 20,788,287 - 20,789,534
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
Downstream geneEG665094, LOC100040325, 7530428D23Rik, LOC100039465
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115M01.bB6Ng01-115M01.g
ACCDH920934DH920935
length1,2351,157
definitionDH920934|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M01, 5' end.DH920935|Mus musculus domesticus DNA, BAC clone: B6Ng01-115M01, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaaaagaatgaccttctgtatgtacagccttcatacagttcaga
agtgatctcttggtgacaaactccccttctaccatctgttagcagcttac
ctagcactgtaactcccatgacacaagaagcacagctttctctctcggtg
gacagtggtgtcggaaacagttgcctaataaatatgctggacttctgggg
atcactcccctttctgttctaatattctcttataactctcatctacttaa
gtcttatgagcattttccagagtcctccccctgccctagacagttctaaa
tatgtagcactttctctataatttcacaaagctgagtcatataaatactg
ctgatttgaaaatcttttgtattgcagtattttaaaatgttgtcagtaaa
ctggggtcagtctaatctacttccccaaaggagagggaatttgaagggca
agcctggatttctactaggaacataagacctcaggctatcaagaactggc
tgtttagtcatagcatgatggggtcagtggtcttttacatattcttgaca
tattctattttggaaagtgacattaaagggtaagaccctggcacagagca
ataatctaggctcaggaagacattttgtttttaagttcccaaaggaagga
gaaacaaaaataaggtaaaataagcaatatttgaagaaatatttgccaag
tgtttctaattaaacaacagaattaaattgtagattcaatcatctctatg
caacaagtaaatataaatgtaaaaagatgtcatagtcaaactgctaagaa
aaatacaaaatgttactaactcttctttagagtggtaataattaacaata
gcaatactgagaactaacttttcaatagagtataatagcctgaacagagt
atagaaacagcttttaatgcaaaataaacaaagaaatacaaaagccaaaa
atatatgtcccccttgttattcacagctcaaatcatgttaaaaattaaga
gaaaacactccttcagatggaacatgaaactgcagaagcaatggcaaata
agagaaagtgttgtgattcttgtacttacagactgatgtcttgagtaaga
ataggccctcatagactcatacattgcatactaggtcacagtgttgacta
ctgcaaaattagaaggattgtgaacattgctcagtacatagcctcagcga
aattcttggtagctccgccacctggctctggcttt
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ctcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactatggaaatcagtctggcggttcctca
gaaaactggatatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaggaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcacttataagtggatattagcccaaaacc
caagatacccaagatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtgaacactatgcccctccttagaagtgggaa
caaaacacccttggaaggagttacagagacaaagtttggagctgagatta
aaggatggaccatgtagacactagcatatccggggatccatcccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttgcctgaa
aggaccctgatatagctgtctcttgtcagagtatgcctgggcctagcaaa
catagaagtggatgctcacagtcgctattggatggatcacatgctcccaa
tgaaggagctagaagaagtaccaaagaagctaaagggatctgcaccctat
aggtggaacacattatgactaacagtaccggagctctgactctagctgca
tatgcatcaaagatgctagtcggcaatccttgtagagaggcccattgcac
cgcaaccttaatggcctagacgggaagccagtcataagtattgtgcgtat
gggagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_20788287_20789534
seq2: B6Ng01-115M01.b_44_1278 (reverse)

seq1  AAAGCCAGAGCCAGGTGGCTGAAGCTACCAAGATTTTCTGCTTGAAAGCT  50
      ||||||||||||||||||| | ||||||||||| |||| |||   | |||
seq2  AAAGCCAGAGCCAGGTGGC-GGAGCTACCAAGAATTTC-GCT--GAGGCT  46

seq1  ATGTACTGACCCATAGTCACATACCTTCTAATATTTGCCAGTAGTCCAAC  100
      ||||||||| | ||  |||||  ||||||||| |||| ||||||| ||||
seq2  ATGTACTGAGCAATGTTCACAATCCTTCTAAT-TTTG-CAGTAGT-CAAC  93

seq1  AACTGTGAACTAAGTATTGCAATGTATGAGTCTATGAGGGCCTA-TCTTA  149
       ||||||| || |||| ||||||||||||||||||||||||||| |||||
seq2  -ACTGTGACCT-AGTA-TGCAATGTATGAGTCTATGAGGGCCTATTCTTA  140

seq1  CTCAGACCATCAGTCTGTAAGTAC-AGAATCAACACACTTTCTCTTATTT  198
      ||||   ||||||||||||||||| |||||||  ||||||||||||| ||
seq2  CTCAAGACATCAGTCTGTAAGTACAAGAATCACAACACTTTCTCTTA-TT  189

seq1  TGCCATTGCTTCTTGCAGTTTCATGTTCCATCTGAAGGAGTTGTTTTCTC  248
      |||||||||||| ||||||||||||||||||||||||||| |||||||| 
seq2  TGCCATTGCTTC-TGCAGTTTCATGTTCCATCTGAAGGAG-TGTTTTCT-  236

seq1  CTTAATTTTTAACATGATTTGAGCTGTGAATAACAAGGGGGACATATATT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTTTTAACATGATTTGAGCTGTGAATAACAAGGGGGACATATATT  286

seq1  TTTGGCTTTTGTATTTCTTTGTTTATTTTGCATTTAAAAGCTGTTTCTAT  348
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTGGCTTTTGTATTTCTTTGTTTATTTTGCA-TTAAAAGCTGTTTCTAT  335

seq1  ACTCTGTTCAGGCTATTATACTCTATTGAAAAGTTAGTTCTCAGTATTGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTTCAGGCTATTATACTCTATTGAAAAGTTAGTTCTCAGTATTGC  385

seq1  TATTGTTAATTATTACCACTCTAAAGAAGAGTTAGTAACATTTTGTATTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAATTATTACCACTCTAAAGAAGAGTTAGTAACATTTTGTATTT  435

seq1  TTCTTAGCAGTTTGACTATGACATCTTTTTACATTTATATTTACTTGTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGCAGTTTGACTATGACATCTTTTTACATTTATATTTACTTGTTG  485

seq1  CATAGAGATGATTGAATCTACAATTTAATTCTGTTGTTTAATTAGAAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGATGATTGAATCTACAATTTAATTCTGTTGTTTAATTAGAAACA  535

seq1  CTTGGCAAATATTTCTTCAAATATTGCTTATTTTACCTTATTTTTGTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAAATATTTCTTCAAATATTGCTTATTTTACCTTATTTTTGTTTC  585

seq1  TCCTTCCTTTGGGAACTTAAAAACAAAATGTCTTCCTGAGCCTAGATTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCTTTGGGAACTTAAAAACAAAATGTCTTCCTGAGCCTAGATTAT  635

seq1  TGCTCTGTGCCAGGGTCTTACCCTTTAATGTCACTTTCCAAAATAGAATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTGCCAGGGTCTTACCCTTTAATGTCACTTTCCAAAATAGAATA  685

seq1  TGTCAAGAATATGTAAAAGACCACTGACCCCATCATGCTATGACTAAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGAATATGTAAAAGACCACTGACCCCATCATGCTATGACTAAACA  735

seq1  GCCAGTTCTTGATAGCCTGAGGTCTTATGTTCCTAGTAGAAATCCAGGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTCTTGATAGCCTGAGGTCTTATGTTCCTAGTAGAAATCCAGGCT  785

seq1  TGCCCTTCAAATTCCCTCTCCTTTGGGGAAGTAGATTAGACTGACCCCAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTCAAATTCCCTCTCCTTTGGGGAAGTAGATTAGACTGACCCCAG  835

seq1  TTTACTGACAACATTTTAAAATACTGCAATACAAAAGATTTTCAAATCAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGACAACATTTTAAAATACTGCAATACAAAAGATTTTCAAATCAG  885

seq1  CAGTATTTATATGACTCAGCTTTGTGAAATTATAGAGAAAGTGCTACATA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTATATGACTCAGCTTTGTGAAATTATAGAGAAAGTGCTACATA  935

seq1  TTTAGAACTGTCTAGGGCAGGGGGAGGACTCTGGAAAATGCTCATAAGAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAACTGTCTAGGGCAGGGGGAGGACTCTGGAAAATGCTCATAAGAC  985

seq1  TTAAGTAGATGAGAGTTATAAGAGAATATTAGAACAGAAAGGGGAGTGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTAGATGAGAGTTATAAGAGAATATTAGAACAGAAAGGGGAGTGAT  1035

seq1  CCCCAGAAGTCCAGCATATTTATTAGGCAACTGTTTCCGACACCACTGTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGAAGTCCAGCATATTTATTAGGCAACTGTTTCCGACACCACTGTC  1085

seq1  CACCGAGAGAGAAAGCTGTGCTTCTTGTGTCATGGGAGTTACAGTGCTAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGAGAGAGAAAGCTGTGCTTCTTGTGTCATGGGAGTTACAGTGCTAG  1135

seq1  GTAAGCTGCTAACAGATGGTAGAAGGGGAGTTTGTCACCAAGAGATCACT  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTGCTAACAGATGGTAGAAGGGGAGTTTGTCACCAAGAGATCACT  1185

seq1  TCTGAACTGTATGAAGGCTGTACATACAGAAGGTCATTCTTTTAGAATTC  1248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACTGTATGAAGGCTGTACATACAGAAGGTCATTCTTTTAGAATTC  1235