BAC Information

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BAC

Clone NameB6Ng01-116A08
Chromosome3 (Build37)
Map Location 59,687,417 - 59,688,519
singlet/doubletsinglet
Overlap genenone
Upstream geneClrn1, LOC100040416, Gpr171, P2ry14, Gpr87, P2ry13, P2ry12, Igsf10, EG666751, EG666756, EG229330, EG435732, LOC433597, LOC433598, LOC100040407, LOC669780, EG666803
Downstream geneC130079G13Rik, LOC676914, Aadacl2, Aadac, Sucnr1, LOC669823, LOC100040485, Mbnl1, LOC676933, LOC100040501, EG666853
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116A08.bB6Ng01-116A08.g
ACCDH921129DH921130
length1,1761,084
definitionDH921129|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A08, 5' end.DH921130|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccactgtcatctgcaagcttgtaaaacaggaaaattcttgctgaa
gttcattctatattcaaaggctttcataccaaggggcacattttcatttc
caatctccatttgaaggcctgagaaatagataaattatgctaaagagtgc
cccaaagcggttgttctggaaacctgggtcttttatatccaagtcagaag
aaattggatgtgcttgcttaaagagaataccttcagcagccaacacaaga
tccaaccctggctgcttctagaactctgtagtatctgagtcacacatgtg
gttctagttttgaaggcatgaagggatcatgaagagcagctgaggcttgg
cacactgtaagaggccagggatggccattggtgaaggcacagcatcagtg
gcagttgaagccccaggactgaaggggatcatcatatgaagaagttgagg
cttggcattgtgaagagagactatgagagggtattagtgagagcacagcc
taattgtagcagaagatcccagaattttggagatgtcagtaacttggact
taccatcaaaagcaggtgtagtatttgaatagagcccactggggcctaga
aggcaagctgtgtgtgctgcagaggcagaggtaaagaagtgaatcaagat
cgttggatgaggctagaagactcatcccagactgcatcccagataattgg
acactgagttgcatataccattggggtttggctttgctcagttcagattg
ttactgttccttgtttcttccatcttgaagacggtttttaatttaatttt
gacgtttatagtagcccacagatgaaagagtttggattttaaaggagatt
ttgaatgttagagagattgaagagtttggattttaaaggagattttgaat
gttagagagattgaaatttcaaagagacagaaattttaatgtgtttgagt
ttggaaagactgtgggactattttgtgattttttttgtaattttttaata
aggtatttctcatttacattttcaatgctatcccaaaagtccccataccc
atccctcactcccttaccacccactcccattttggcctgaaagttgcagt
gaactgtggactttaggtaagttttacgtgagaatacttgaatagaatac
aacgacaggtgtgcgcgtctatgtga
gaattctgttgagaggttggggtactttaaaacacatcctgggctatata
ttcgggaacgaataaataaacccaactgtagatcctgactcttagcacag
actgtgagaataaggaagacacagtgagctaagttagaaataagagagct
gtaaaggagaaagaagacagaaaactcagagaagaaaatagaaacatgtt
cttcacagatggtggagtaaatgctcagagcctgtcacaaactattactt
tcatgctattttgatttctggggaattgtgatgttctctaatctagtgct
tggtgaaccagatgactcaatgataaagataatcctgtgttcaaccccag
aaactcacataaaggtggaagggaaatcctgactccataaagttgtcctc
ttctcacaggattgttgttttgggggcccatgccatatgcacacacacat
acacacatacacacacacacacacacacacacacacacacacacacacac
acacatgcacgcacacacacacacacacacacacacacacacaagcaaat
ttaaatactttcatttaaatgaaaaagccagaaaagaaataaaaactttc
attccttgttatcatatgagatacttggttttccatagggtttcagggat
aactttaaaacactgttagaacttttatagtttatcttttgagtctcaag
ttggttttttatatgaaataagagaccaatttcatccttttgtatctgta
gctgtagaaatttccttcccactgcatgttaccatctctattggagatta
cttggtcaaaatatgtagatgtaacatgtatatgtctctattctgttgct
atattttactctttctgttttatttttttccttctgctgagaaagattct
tttctcactcaacatatcttgattaaacttccttcctctcagccattcat
ccctacattccctttcttctggtttcactccttttcagtatcttactaaa
aagaacagcttatacagataaaaaaatgttgctatatgaaagaagaaaat
aagattacagagacttatgttagtctggtcgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_59687417_59688519
seq2: B6Ng01-116A08.g_68_1151

seq1  GAATTCTGTTGAGAGGTTGGGGTACTTTAAAACACATCCTGGGCTATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGAGAGGTTGGGGTACTTTAAAACACATCCTGGGCTATATA  50

seq1  TTCGGGAACGAATAAATAAACCCAACTGTAGATCCTGACTCTTAGCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGGAACGAATAAATAAACCCAACTGTAGATCCTGACTCTTAGCACAG  100

seq1  ACTGTGAGAATAAGGAAGACACAGTGAGCTAAGTTAGAAATAAGAGAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAGAATAAGGAAGACACAGTGAGCTAAGTTAGAAATAAGAGAGCT  150

seq1  GTAAAGGAGAAAGAAGACAGAAAACTCAGAGAAGAAAATAGAAACATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGGAGAAAGAAGACAGAAAACTCAGAGAAGAAAATAGAAACATGTT  200

seq1  CTTCACAGATGGTGGAGTAAATGCTCAGAGCCTGTCACAAACTATTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACAGATGGTGGAGTAAATGCTCAGAGCCTGTCACAAACTATTACTT  250

seq1  TCATGCTATTTTGATTTCTGGGGAATTGTGATGTTCTCTAATCTAGTGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCTATTTTGATTTCTGGGGAATTGTGATGTTCTCTAATCTAGTGCT  300

seq1  TGGTGAACCAGATGACTCAATGATAAAGATAATCCTGTGTTCAACCCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAACCAGATGACTCAATGATAAAGATAATCCTGTGTTCAACCCCAG  350

seq1  AAACTCACATAAAGGTGGAAGGGAAATCCTGACTCCATAAAGTTGTCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACATAAAGGTGGAAGGGAAATCCTGACTCCATAAAGTTGTCCTC  400

seq1  TTCTCACAGGATTGTTGTTTTGGGGGCCCATGCCATATGCACACACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACAGGATTGTTGTTTTGGGGGCCCATGCCATATGCACACACACAT  450

seq1  ACACACATACACACACACACACACACACACACACACACACACACACACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACATACACACACACACACACACACACACACACACACACACACACAC  500

seq1  ACACATGCACGCACACACACACACACACACACACACACACACAAGCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGCACGCACACACACACACACACACACACACACACACAAGCAAAT  550

seq1  TTAAATACTTTCATTTAAATGAAAAAGCCAGAAAAGAAATAAAAACTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATACTTTCATTTAAATGAAAAAGCCAGAAAAGAAATAAAAACTTTC  600

seq1  ATTCCTTGTTATCATATGAGATACTTGGTTTTCCATAGGGTTTCAGGGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGTTATCATATGAGATACTTGGTTTTCCATAGGGTTTCAGGGAT  650

seq1  AACTTTAAAACACTGTTAGAACTTTTATAGTTTATCTTTTGAGTCTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAAAACACTGTTAGAACTTTTATAGTTTATCTTTTGAGTCTCAAG  700

seq1  TTGGTTTTTTATATGAAATAAGAGACCAATTTCATCCTTTTGTATCTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTTTATATGAAATAAGAGACCAATTTCATCCTTTTGTATCTGTA  750

seq1  GCTGTAGAAATTTCCTTCCCACTGCATGTTACCATCTCTATTGGAGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGAAATTTCCTTCCCACTGCATGTTACCATCTCTATTGGAGATTA  800

seq1  CTTGGTCAAAATATGTAGATGTAACATGTATATGTCTCTATTCTGTTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCAAAATATGTAGATGTAACATGTATATGTCTCTATTCTGTTGCT  850

seq1  ATATTTTACTCTTTCTGTTTTATTTTTTTCCTTCTGCTGAGAAAAGATTC  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATATTTTACTCTTTCTGTTTTATTTTTTTCCTTCTGCTGAG-AAAGATTC  899

seq1  TTTTCTCACTCAACATATCTTGATTAAAACTTCCTTCCCTCTCCAGCCAG  950
      ||||||||||||||||||||||||| |||||||||| ||||| |||||| 
seq2  TTTTCTCACTCAACATATCTTGATT-AAACTTCCTT-CCTCT-CAGCCA-  945

seq1  TTCATCCCTACATTCCCTTTCTTCTGGTTTCACTCCTTTTCAGTATCTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCCCTACATTCCCTTTCTTCTGGTTTCACTCCTTTTCAGTATCTTA  995

seq1  CTAAAAAGAACAGGGTTATACATGATAAAAACAAAATGTTGCTATATGAA  1050
      |||||||||||| | ||||||| ||||||   ||||||||||||||||||
seq2  CTAAAAAGAACA-GCTTATACA-GATAAA---AAAATGTTGCTATATGAA  1040

seq1  AAGAAAGAAAAATAAAGATTACAAGAGAACATTATGTTAAGTCTGGTCAG  1100
      |   |||||||   |||||||| |||||   ||||||| ||||||||| |
seq2  A--GAAGAAAA--TAAGATTAC-AGAGA--CTTATGTT-AGTCTGGTC-G  1081

seq1  AGG  1103
      |||
seq2  AGG  1084