BAC Information

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BAC

Clone NameB6Ng01-116A20
Chromosome3 (Build37)
Map Location 24,576,651 - 24,577,792
singlet/doubletsinglet
Overlap geneEG635702
Upstream geneEG665189
Downstream geneLOC100039592, Nlgn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116A20.bB6Ng01-116A20.g
ACCDH921151DH921152
length9901,141
definitionDH921151|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A20, 5' end.DH921152|Mus musculus domesticus DNA, BAC clone: B6Ng01-116A20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctagtggctcgggctttaatttcaagaattgataaatggaacctc
atgaaactgaaaagcttctttaaggcaaaaaacatagactataggacaaa
ttggcaacctctgggtcgggaaaaaaatcttcaccaaccccacatatgat
agagggacaatatccaaaaaatattcagaactcaagaagctaatcacaat
aaaactaaactacccaatcaaatattgagtacaaagctaaacaaagaatt
cacaaaagaggaatctcaaatgacagggaagcatttaaagaaatatttat
catcctaagacatcagggaaatgcaaattaaaatgaccctgagattccat
cttataccaatcagaatggctaagatcaaaaactcatgttgacaaggatg
tggggaaagaacaacactcccccattgatggtgggattgcaaattggtac
aaccactcttgaaatcaatctgtagattcccaagaaaattggaaacagat
ctacctgaagacccagttgtgccacttctggcatattcccaaaagatgat
ccacagaaccacaggggcacatcctccactatgttcatagtgaccttatc
tgtgatagccagaagctggaaacaacctagatgtcccactatggaagaat
ggatacagaaacatggttcatttacctaatggaataatagtcacctattt
tgaacaaggaaatcgtgagttttcaggcaaatgaatggaactagaaaata
tcacctagagtaaagtaattcaaacccaaaaggacatgaatgatatatac
tcactaataagtgaataataaggcaaaaaagtatagaatacccaggatgc
aacccacagaactcaagaaaattaacaagccaaaaggcccaagtaaggat
gcttcaatctcacttgggaggggaaagaaagcaatcagggaggcagagag
aggaaggggaggaagggacctagtggaggggagaaggtaa
gaattctctctccataaatacagttactttgattggcctatctttagtct
tcacacacaacggcctagataagatggtatttatcctggccacagttgaa
gggaaacatttaatccaggtgagcatggtaggaagttggagtttggctat
ctgatttgccttgtggctaggacttcagtccatatggaggcctgtaggac
ttcattctatgggatttttcggtgttgattcttctcatacaattattact
gtcaccagtcattggtagacaaatctaatgatagaagtagaaaaaccatt
tcagcttgggggagctatggagtcattcacagaggatggagcacagaagc
ctgtgtggtggtgcgctgtctgcttcctggctctgtgctatgtcaccatc
cctatattaaggaaggacagatggtaacctcacgctaccatcacttctga
aggaaactggcaaatagtttctttttaaagggcaactaattcattaatac
caaactgactgtcaggaaaatgtttctacaattttcaacatcccaaactt
ttaaaagtgaagtctattttaaagctcaaagtatttatattgttttttaa
aaacgaaaaatcctctgaaatctgaataattaggcatctggttgcactag
atacatcccaagaaaaacacacctcaatccctgcctttcttcttccccac
gtcccctctcccgttatgatggtcagtaactcaaggctactcacaatgca
agtggcattatttgtgctttgagatatgtgaagacaaaagaagaaattaa
caggtaaaaaagaaaccaataagagatgaggtttctctataatgatcaaa
cattttcttacaccaatttgttagaaaaaaatattcaactaatgaaaaga
gatatattttaacttaacagatgtcataagaatgaaacaaaattataagc
tttgtatatcaataaggaatatcaactggagtactaatgttatcttaaag
accaagtaacataaaagtgatattaccacatgtcactttacaccttacta
cacctcagaaagtaactcagctcagtagaactgaggaagaatgctgtttc
tggtcaattacctctaaccttaaactttatatttattcaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_24576651_24577792
seq2: B6Ng01-116A20.g_66_1206

seq1  GAATTCTCTCTCCATAAATACAGTTACTTTGATTGGCCTATCTTTAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCTCCATAAATACAGTTACTTTGATTGGCCTATCTTTAGTCT  50

seq1  TCACACACAACGGCCTAGATAAGATGGTATTTATCCTGGCCACAGTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACACAACGGCCTAGATAAGATGGTATTTATCCTGGCCACAGTTGAA  100

seq1  GGGAAACATTTAATCCAGGTGAGCATGGTAGGAAGTTGGAGTTTGGCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACATTTAATCCAGGTGAGCATGGTAGGAAGTTGGAGTTTGGCTAT  150

seq1  CTGATTTGCCTTGTGGCTAGGACTTCAGTCCATATGGAGGCCTGTAGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTGCCTTGTGGCTAGGACTTCAGTCCATATGGAGGCCTGTAGGAC  200

seq1  TTCATTCTATGGGATTTTTCGGTGTTGATTCTTCTCATACAATTATTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTATGGGATTTTTCGGTGTTGATTCTTCTCATACAATTATTACT  250

seq1  GTCACCAGTCATTGGTAGACAAATCTAATGATAGAAGTAGAAAAACCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAGTCATTGGTAGACAAATCTAATGATAGAAGTAGAAAAACCATT  300

seq1  TCAGCTTGGGGGAGCTATGGAGTCATTCACAGAGGATGGAGCACAGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTGGGGGAGCTATGGAGTCATTCACAGAGGATGGAGCACAGAAGC  350

seq1  CTGTGTGGTGGTGCGCTGTCTGCTTCCTGGCTCTGTGCTATGTCACCATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGGTGGTGCGCTGTCTGCTTCCTGGCTCTGTGCTATGTCACCATC  400

seq1  CCTATATTAAGGAAGGACAGATGGTAACCTCACGCTACCATCACTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATATTAAGGAAGGACAGATGGTAACCTCACGCTACCATCACTTCTGA  450

seq1  AGGAAACTGGCAAATAGTTTCTTTTTAAAGGGCAACTAATTCATTAATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACTGGCAAATAGTTTCTTTTTAAAGGGCAACTAATTCATTAATAC  500

seq1  CAAACTGACTGTCAGGAAAATGTTTCTACAATTTTCAACATCCCAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTGACTGTCAGGAAAATGTTTCTACAATTTTCAACATCCCAAACTT  550

seq1  TTAAAAGTGAAGTCTATTTTAAAGCTCAAAGTATTTATATTGTTTTTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGTGAAGTCTATTTTAAAGCTCAAAGTATTTATATTGTTTTTTAA  600

seq1  AAACGAAAAATCCTCTGAAATCTGAATAATTAGGCATCTGGTTGCACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAAAAATCCTCTGAAATCTGAATAATTAGGCATCTGGTTGCACTAG  650

seq1  ATACATCCCAAGAAAAACACACCTCAATCCCTGCCTTTCTTCTTCCCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATCCCAAGAAAAACACACCTCAATCCCTGCCTTTCTTCTTCCCCAC  700

seq1  GTCCCCTCTCCCGTTATGATGGTCAGTAACTCAAGGCTACTCACAATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTCTCCCGTTATGATGGTCAGTAACTCAAGGCTACTCACAATGCA  750

seq1  AGTGGCATTATTTGTGCTTTGAGATATGTGAAGACAAAAGAAGAAATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCATTATTTGTGCTTTGAGATATGTGAAGACAAAAGAAGAAATTAA  800

seq1  CAGGTAAAAAAGAAACCAATAAGAGATGAGGTTTCTCTATAATGATCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAAAAGAAACCAATAAGAGATGAGGTTTCTCTATAATGATCAAA  850

seq1  CATTTTCTTACACCAATTTGTTAGAAAAAAATATTCAACTAATGAAAAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTACACCAATTTGTTAGAAAAAAATATTCAACTAATGAAAAGA  900

seq1  GATATATTTTAACTTAACAGATGTCATAAGAATGAAACAAAATTATAAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTTTAACTTAACAGATGTCATAAGAATGAAACAAAATTATAAGC  950

seq1  TTTGTATATCAATAAGGAATATCAACTGGAGTACTAATGTTAATCTTAAA  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTGTATATCAATAAGGAATATCAACTGGAGTACTAATGTT-ATCTTAAA  999

seq1  GACCAAGTAACATAAAAGTGATATTAACACATGTCAC-TTACA-CTTACT  1048
      |||||||||||||||||||||||||| |||||||||| ||||| ||||||
seq2  GACCAAGTAACATAAAAGTGATATTACCACATGTCACTTTACACCTTACT  1049

seq1  ACA-CTCAGACAGTAAACTCAAGCTCAGTAAGACTGAGGAAAGTATGCTG  1097
      ||| |||||| ||| ||||| |||||||||  ||||||| ||| ||||||
seq2  ACACCTCAGAAAGT-AACTC-AGCTCAGTAGAACTGAGG-AAGAATGCTG  1096

seq1  TTTTCCTGTCAAT--ACTCTAACCTTAACCTTTATTATTTATTCAAA  1142
       ||||  ||||||   |||||||||||| ||||| ||||||||||||
seq2  -TTTCTGGTCAATTACCTCTAACCTTAAACTTTA-TATTTATTCAAA  1141